TCONS_00005095 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005095
Unique NameTCONS_00005095
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length325

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005095 ID=TCONS_00005095|Name=TCONS_00005095|organism=Clytia hemisphaerica|type=transcript|length=325bp
atattttcaaaaatcatcacattttaggtatttcCATTTTGCATTATTAA
TTTAAAGGActtccgaggtaggtccaaaaaaatttgaattgctgAAGTCA
TCATAAAGGTACTGACGTCCTCACAAAGTAATCATATTTACCGCTGAcca
ttaaaaaattttcaatctaaCAAAATATATCCCAAAAAgattaaattata
aattatcacTTTATAATAAGATTTCAATGTCCCATTCTCATTCTCATCAA
TTCAATTGCTTGAACAGAAACTAAAGTAAAACTTTCGTCAATCTATCCAA
TGGATTCCCGGACAATTGCCCCTGG
Run BLAST on NCBI

transcript from alignment at sc0000050:268862..269186

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005095 ID=TCONS_00005095|Name=TCONS_00005095|organism=Clytia hemisphaerica|type=transcript|length=325bp|location=Sequence derived from alignment at sc0000050:268862..269186 (Clytia hemisphaerica)
CCAGGGGCAATTGTCCGGGAATCCATTGGATAGATTGACGAAAGTTTTAC
TTTAGTTTCTGTTCAAGCAATTGAATTGATGAGAATGAGAATGGGACATT
GAAATCTTATTATAAAgtgataatttataatttaatcTTTTTGGGATATA
TTTTGttagattgaaaattttttaatggTCAGCGGTAAATATGATTACTT
TGTGAGGACGTCAGTACCTTTATGATGACTTcagcaattcaaattttttt
ggacctacctcggaagTCCTTTAAATTAATAATGCAAAATGgaaatacct
aaaatgtgatgatttttgaaaatat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002891XLOC_002891Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005095-exon-sc0000050-1491911889:268862..269186TCONS_00005095-exon-sc0000050-1491911889:268862..269186Clytia hemisphaericaexon
TCONS_00005095-exon-sc0000050-1510915933:268862..269186TCONS_00005095-exon-sc0000050-1510915933:268862..269186Clytia hemisphaericaexon
TCONS_00005095-exon-sc0000050-1575043694:268862..269186TCONS_00005095-exon-sc0000050-1575043694:268862..269186Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:268862..269186 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.47452	0.3259	0	0.736189	0.257712	0	0.929521	0	1.83054	2.74594	0.52097	0	0	0	0	0	0.295688	0.432678	0.701303	1.27517	0	0.586088	0.83869	1.79014	4.41272	4.15003
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005095 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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