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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005091 ID=TCONS_00005091|Name=TCONS_00005091|organism=Clytia hemisphaerica|type=transcript|length=911bp
TGTACATTCAAATATCAAAAGACATTCTACAAATGGTAGGaagaaatatt
aacaaaatatttgaaacaagaAATCCAACACAAACACAACAAAACTTGAA
GATGAAATGTTTTCTATTGGGTAAGTATCTCTTGGTTACAGAAGAAACGT
TAAAGtatctttgaaacaaaaatgttttcaccATATTTAAAAGATTCACC
CATCTGCCATGATGGCTGCTGCCCACCAGTACCTCCAAAAGATTGCATAC
ATCTTTTATACTCTCGTTGCTGGAAAACTTTCACTGAGTTGTGAGTctga
taaaattcaaaacaatcatACAAGTCTTTAACAGAAATTGATTCATCGTA
TGAATTGCTACCCATGGGTCCACTACGaagaatgatgacgtcaccataGA
TTTTTGAAGAACAGCACCCAGATGCGAACACATTTTCATCAGAAAATCTT
TTCACTCTATTTCTAGTATCATCATAATAAATGTAATAATACcattgaaa
atcaatttcatttggtgaataaaatttataaagagTCCCTGATACATCCT
TCCAACCGAATCGTGAACGAATCTCCTTCATCTCTCCAGCCTCGTTCCCA
TAACTTTCCAATTCAAATAAATCAGTCTTTGCATCAAATTCGTCGTAAGA
GTCAAAGGAACCAGCTTTAACATAAATAGTTTTGGCACGCTTCATATTTT
TACTTTCCTTTCGTTTCTCAGTGGACGCCCCTTTGGGTTTATTGCACGGT
TTGCAAGAGGGTTTGTGGGTTTTCCAGTGAGCCATCTGACAATCTCTACT
GCAATAATATACTTGTAAACATTGCCCACATTTCTTTGTACCATGGTTCG
AGCATTTCAtgcatttttttggattttccaTTCCTCGTCTTCCTTTTATA
TTATGTTCTTC Run BLAST on NCBI protein sequence of TCONS_00005091-protein >TCONS_00005091-protein ID=TCONS_00005091-protein|Name=TCONS_00005091-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
EEHNIKGRRGMENPKKCMKCSNHGTKKCGQCLQVYYCSRDCQMAHWKTHK
PSCKPCNKPKGASTEKRKESKNMKRAKTIYVKAGSFDSYDEFDAKTDLFE
LESYGNEAGEMKEIRSRFGWKDVSGTLYKFYSPNEIDFQWYYYIYYDDTR
NRVKRFSDENVFASGCCSSKIYGDVIILRSGPMGSNSYDESISVKDLYDC
FEFYQTHNSVKVFQQREYKRCMQSFGGTGGQQPSWQMGESFKYGENIFVS
KIL Run BLAST on NCBI transcript from alignment at sc0000050:132206..133116 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005091 ID=TCONS_00005091|Name=TCONS_00005091|organism=Clytia hemisphaerica|type=transcript|length=911bp|location=Sequence derived from alignment at sc0000050:132206..133116 (Clytia hemisphaerica)
GAAGAACATAATATAAAAGGAAGACGAGGAAtggaaaatccaaaaaaatg
caTGAAATGCTCGAACCATGGTACAAAGAAATGTGGGCAATGTTTACAAG
TATATTATTGCAGTAGAGATTGTCAGATGGCTCACTGGAAAACCCACAAA
CCCTCTTGCAAACCGTGCAATAAACCCAAAGGGGCGTCCACTGAGAAACG
AAAGGAAAGTAAAAATATGAAGCGTGCCAAAACTATTTATGTTAAAGCTG
GTTCCTTTGACTCTTACGACGAATTTGATGCAAAGACTGATTTATTTGAA
TTGGAAAGTTATGGGAACGAGGCTGGAGAGATGAAGGAGATTCGTTCACG
ATTCGGTTGGAAGGATGTATCAGGGActctttataaattttattcaccaa
atgaaattgattttcaatgGTATTATTACATTTATTATGATGATACTAGA
AATAGAGTGAAAAGATTTTCTGATGAAAATGTGTTCGCATCTGGGTGCTG
TTCTTCAAAAATCtatggtgacgtcatcattcttCGTAGTGGACCCATGG
GTAGCAATTCATACGATGAATCAATTTCTGTTAAAGACTTGTatgattgt
tttgaattttatcagACTCACAACTCAGTGAAAGTTTTCCAGCAACGAGA
GTATAAAAGATGTATGCAATCTTTTGGAGGTACTGGTGGGCAGCAGCCAT
CATGGCAGATGGGTGAATCTTTTAAATATggtgaaaacatttttgtttca
aagataCTTTAACGTTTCTTCTGTAACCAAGAGATACTTACCCAATAGAA
AACATTTCATCTTCAAGTTTTGTTGTGTTTGTGTTGGATTtcttgtttca
aatattttgttaatatttcttCCTACCATTTGTAGAATGTCTTTTGATAT
TTGAATGTACA Coding sequence (CDS) from alignment at sc0000050:132206..133116 >TCONS_00005091 ID=TCONS_00005091|Name=TCONS_00005091|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0000050:132206..133116 (Clytia hemisphaerica)
GAAGAACATAATATAAAAGGAAGACGAGGAAtggaaaatccaaaaaaatg
caTGAAATGCTCGAACCATGGTACAAAGAAATGTGGGCAATGTTTACAAG
TATATTATTGCAGTAGAGATTGTCAGATGGCTCACTGGAAAACCCACAAA
CCCTCTTGCAAACCGTGCAATAAACCCAAAGGGGCGTCCACTGAGAAACG
AAAGGAAAGTAAAAATATGAAGCGTGCCAAAACTATTTATGTTAAAGCTG
GTTCCTTTGACTCTTACGACGAATTTGATGCAAAGACTGATTTATTTGAA
TTGGAAAGTTATGGGAACGAGGCTGGAGAGATGAAGGAGATTCGTTCACG
ATTCGGTTGGAAGGATGTATCAGGGActctttataaattttattcaccaa
atgaaattgattttcaatgGTATTATTACATTTATTATGATGATACTAGA
AATAGAGTGAAAAGATTTTCTGATGAAAATGTGTTCGCATCTGGGTGCTG
TTCTTCAAAAATCtatggtgacgtcatcattcttCGTAGTGGACCCATGG
GTAGCAATTCATACGATGAATCAATTTCTGTTAAAGACTTGTatgattgt
tttgaattttatcagACTCACAACTCAGTGAAAGTTTTCCAGCAACGAGA
GTATAAAAGATGTATGCAATCTTTTGGAGGTACTGGTGGGCAGCAGCCAT
CATGGCAGATGGGTGAATCTTTTAAATATggtgaaaacatttttgtttca
aagataCTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005091-exon-sc0000050-1491911889:132206..133116 | TCONS_00005091-exon-sc0000050-1491911889:132206..133116 | Clytia hemisphaerica | exon |
| TCONS_00005091-exon-sc0000050-1510915933:132206..133116 | TCONS_00005091-exon-sc0000050-1510915933:132206..133116 | Clytia hemisphaerica | exon |
| TCONS_00005091-exon-sc0000050-1575043694:132206..133116 | TCONS_00005091-exon-sc0000050-1575043694:132206..133116 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:132206..133116 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002893 | Znf_MYND |
Blast
The following BLAST results are available for this feature:
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