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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005090 ID=TCONS_00005090|Name=TCONS_00005090|organism=Clytia hemisphaerica|type=transcript|length=2537bp
AATATGACTAATATGTGTGATTTGATTGAATTATAATTAAATAGTTACAA
AATACGAAATGAAAGAGTAATATGGTATCTGtgatatttttgaatttcga
gCATTATAATTTAATGATATAAAATTTAACTTAATGGTTTATATTATTAC
GTATATCCTTTTcttaaagccattgaccttttacacagttataatgtatg
ttgattcagcagattgaaataaatagaatcttttgtaatgaataaggaaa
aatgtggagcaagatttttttcttccttttatttacaaatttgaaaggac
tcttttattaaaattttgctgacatcagtttcagacgagtcgggtgtata
taacaccgtataattcctttaaTATTACCTTGATAATCATTTTTCTATAC
AAACATAGTTTTTAACATCACCAATGATGAATATTATAGTTTTTCAAGAA
GACGGCAAAATAGGGtttattgttttcattcatTCCATGATGAATTGGGT
GGTAAACACGGGCCGCCCCATCTTCTTCTGTTAGAGGAACACGAAATCCT
TTCTCTTTCTCATACTGCGCCTGTTCATAAGGGCGCTCATCTGTACACCA
CCCTGTGTCAACAGCAGTCATATAAATTCTCTCAGGTTCAAATTCTATGC
CAGTTGTTCGGGTCAACATATTCAATGCAGCTTTTGCCATATTGGTGTGG
ACATGATGTGGCCCTTTATTGAAGCGCGAGAATTGTCCTTCCATGGCAGA
AACATTGATGATAAATTTACGCTCAAAGGGGGATGCGAGTAACAATGGTT
TAAGTTgggaaatcaaaacaaaaggtgCAACAGAATTAACAGTTAAAACT
TGTAACAATTCTGAGAATGGAATATCAGTCAGTTTCAACCGCCATGAATT
CATGGGTCGTAAATCCAACTGTTGTCCATCGTCACCTTTAAGACCATGAG
GAAACCAGACACTATTATTGTTAACAGGGTTATGGAAAAGGTCATTACCA
TTAGCTTTATAAGATGATGTGGATGGCTTAGAAACAATATCGATTGTAGG
AGTGTCAGAGCTTGCTTTTTGTTTCTTCAACAAAGGTTCCTCAGTTGCTG
GTGAGATAGCTGCAGAATCATCATCGGAATGTTTTTTCTGGTTTGAGTTG
TGTCTGCGTTTCATTGTAAAGCTATCAAATGAGTTTGTATTTGTTAAGGC
TAATTGATTTTCCTGTTGTTGTAGgtcattgaaatattttgatggGCGCC
AGATAGTCTGAGCAGCATTATTAATAAGGATATCAAGATGTGGTAGGTTA
CTTTTAGTCCATAAGATGAACTCTTGAACAGAATGCATGTTCATGAGATC
TAGCTTTTTGAATTGAATCCTATCTTTCCATTCATCATAATCAGGGAGCT
CTGAGTAAGTATTACGAGCACAATTTGGGAATCGTGTGGTGACAATGACA
TTACAGCCATCACGTAGGAGACGTAACGAAATATATAATCCAATCTTGAT
CCGACCACCTGTTACAATAGCATACCTTTTATGTAAAGGTGTCTTAGCTT
TTAACATCTGatcattcaaatcaaaacatggcttacaaaaagtcatttcA
ATATCAAAGAGACGTGTTTTACAAACATAACATTTCGTATNGgcttacaa
aaagtcatttcAATATCAAAGAGGCGTGTTTTACATACATAACATTTCGT
GAACAGAGTTCTACTTGCATTTCCTGTTTCTTCAATCTCATCAAATGATT
CCGAGGATTCTTCAGTGTCTCTTTTATTTGCTTCAGCTTGAAATTTCTTC
ATTCTATTGAAAATAGATCGTTTTGTTGAGCGTGAGTTGCCTGCTTTTTG
GGTAGAAACACATTGGTTAGATAGTTCGTTCAATTCATTACCatgattat
tttttcttttaatcttTCCTTTAAGTTTCCGTTTTAACAAGGGGTGCATT
CTGAAAATTTTAGGCAAATCAGCTTCAATATTATATGCTGATTTTAATAG
TTTTCCTGATTCAAGTAATTCTTCATTGGATAGTTCTGGACAAGCAATTA
TCAATTTCTGTACGATATTTTGATGTTGTCTGCAGCGACTTTCCAATTCA
TAAAACATAGGTTTATCTTtaacaacaacaataaaaatttgCTGCTTTTC
ATGTAACATATTAAGTTTCAAAGCAAGCCTTTTGTACGTTTCATCCACAT
TAAACCATCGACAATCAAGGATAATTTGATCAACATAGTCATCAAAATTG
AGTGTTTTAAGTGTCTCAACACTTTCAACTCGAATAAACTCGACTCCCTG
CATACTCTTCTTTTATGTTCCCAAAATTTgtgttctttattttcttttca
aaattgtatGATTGCAATCAATTTTGACCATGTTTAAGGTACTGGACATA
CTAGCAAGTTATCTGTGTGGGGTTTATGTCTTCATGTCAGTTTATTTTGA
TCTGAAAGAAAGAGTTATTTAGATTTTATATTAcctctttgaaagaaaaa
atactgATCACTCCAGCagaaattattttaatgtcat Run BLAST on NCBI protein sequence of TCONS_00005090-protein >TCONS_00005090-protein ID=TCONS_00005090-protein|Name=TCONS_00005090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=392bp
MTFCKPCFDLNDQMLKAKTPLHKRYAIVTGGRIKIGLYISLRLLRDGCNV
IVTTRFPNCARNTYSELPDYDEWKDRIQFKKLDLMNMHSVQEFILWTKSN
LPHLDILINNAAQTIWRPSKYFNDLQQQENQLALTNTNSFDSFTMKRRHN
SNQKKHSDDDSAAISPATEEPLLKKQKASSDTPTIDIVSKPSTSSYKANG
NDLFHNPVNNNSVWFPHGLKGDDGQQLDLRPMNSWRLKLTDIPFSELLQV
LTVNSVAPFVLISQLKPLLLASPFERKFIINVSAMEGQFSRFNKGPHHVH
TNMAKAALNMLTRTTGIEFEPERIYMTAVDTGWCTDERPYEQAQYEKEKG
FRVPLTEEDGAARVYHPIHHGMNENNKPYFAVFLKNYNIHHW Run BLAST on NCBI transcript from alignment at sc0000050:123721..126257 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005090 ID=TCONS_00005090|Name=TCONS_00005090|organism=Clytia hemisphaerica|type=transcript|length=2537bp|location=Sequence derived from alignment at sc0000050:123721..126257 (Clytia hemisphaerica)
atgacattaaaataatttctGCTGGAGTGATcagtattttttctttcaaa
gaggTAATATAAAATCTAAATAACTCTTTCTTTCAGATCAAAATAAACTG
ACATGAAGACATAAACCCCACACAGATAACTTGCTAGTATGTCCAGTACC
TTAAACATGGTCAAAATTGATTGCAATCatacaattttgaaaagaaaata
aagaacacAAATTTTGGGAACATAAAAGAAGAGTATGCAGGGAGTCGAGT
TTATTCGAGTTGAAAGTGTTGAGACACTTAAAACACTCAATTTTGATGAC
TATGTTGATCAAATTATCCTTGATTGTCGATGGTTTAATGTGGATGAAAC
GTACAAAAGGCTTGCTTTGAAACTTAATATGTTACATGAAAAGCAGcaaa
tttttattgttgttgttaAAGATAAACCTATGTTTTATGAATTGGAAAGT
CGCTGCAGACAACATCAAAATATCGTACAGAAATTGATAATTGCTTGTCC
AGAACTATCCAATGAAGAATTACTTGAATCAGGAAAACTATTAAAATCAG
CATATAATATTGAAGCTGATTTGCCTAAAATTTTCAGAATGCACCCCTTG
TTAAAACGGAAACTTAAAGGAaagattaaaagaaaaaataatcatGGTAA
TGAATTGAACGAACTATCTAACCAATGTGTTTCTACCCAAAAAGCAGGCA
ACTCACGCTCAACAAAACGATCTATTTTCAATAGAATGAAGAAATTTCAA
GCTGAAGCAAATAAAAGAGACACTGAAGAATCCTCGGAATCATTTGATGA
GATTGAAGAAACAGGAAATGCAAGTAGAACTCTGTTCACGAAATGTTATG
TATGTAAAACACGCCTCTTTGATATTgaaatgactttttgtaagcCNATA
CGAAATGTTATGTTTGTAAAACACGTCTCTTTGATATTgaaatgactttt
tgtaagccatgttttgatttgaatgatCAGATGTTAAAAGCTAAGACACC
TTTACATAAAAGGTATGCTATTGTAACAGGTGGTCGGATCAAGATTGGAT
TATATATTTCGTTACGTCTCCTACGTGATGGCTGTAATGTCATTGTCACC
ACACGATTCCCAAATTGTGCTCGTAATACTTACTCAGAGCTCCCTGATTA
TGATGAATGGAAAGATAGGATTCAATTCAAAAAGCTAGATCTCATGAACA
TGCATTCTGTTCAAGAGTTCATCTTATGGACTAAAAGTAACCTACCACAT
CTTGATATCCTTATTAATAATGCTGCTCAGACTATCTGGCGCccatcaaa
atatttcaatgacCTACAACAACAGGAAAATCAATTAGCCTTAACAAATA
CAAACTCATTTGATAGCTTTACAATGAAACGCAGACACAACTCAAACCAG
AAAAAACATTCCGATGATGATTCTGCAGCTATCTCACCAGCAACTGAGGA
ACCTTTGTTGAAGAAACAAAAAGCAAGCTCTGACACTCCTACAATCGATA
TTGTTTCTAAGCCATCCACATCATCTTATAAAGCTAATGGTAATGACCTT
TTCCATAACCCTGTTAACAATAATAGTGTCTGGTTTCCTCATGGTCTTAA
AGGTGACGATGGACAACAGTTGGATTTACGACCCATGAATTCATGGCGGT
TGAAACTGACTGATATTCCATTCTCAGAATTGTTACAAGTTTTAACTGTT
AATTCTGTTGcaccttttgttttgatttcccAACTTAAACCATTGTTACT
CGCATCCCCCTTTGAGCGTAAATTTATCATCAATGTTTCTGCCATGGAAG
GACAATTCTCGCGCTTCAATAAAGGGCCACATCATGTCCACACCAATATG
GCAAAAGCTGCATTGAATATGTTGACCCGAACAACTGGCATAGAATTTGA
ACCTGAGAGAATTTATATGACTGCTGTTGACACAGGGTGGTGTACAGATG
AGCGCCCTTATGAACAGGCGCAGTATGAGAAAGAGAAAGGATTTCGTGTT
CCTCTAACAGAAGAAGATGGGGCGGCCCGTGTTTACCACCCAATTCATCA
TGGAatgaatgaaaacaataaaCCCTATTTTGCCGTCTTCTTGAAAAACT
ATAATATTCATCATTGGTGATGTTAAAAACTATGTTTGTATAGAAAAATG
ATTATCAAGGTAATAttaaaggaattatacggtgttatatacacccgact
cgtctgaaactgatgtcagcaaaattttaataaaagagtcctttcaaatt
tgtaaataaaaggaagaaaaaaatcttgctccacatttttccttattcat
tacaaaagattctatttatttcaatctgctgaatcaacatacattataac
tgtgtaaaaggtcaatggctttaagAAAAGGATATACGTAATAATATAAA
CCATTAAGTTAAATTTTATATCATTAAATTATAATGctcgaaattcaaaa
atatcaCAGATACCATATTACTCTTTCATTTCGTATTTTGTAACTATTTA
ATTATAATTCAATCAAATCACACATATTAGTCATATT Coding sequence (CDS) from alignment at sc0000050:123721..126257 >TCONS_00005090 ID=TCONS_00005090|Name=TCONS_00005090|organism=Clytia hemisphaerica|type=CDS|length=1179bp|location=Sequence derived from alignment at sc0000050:123721..126257 (Clytia hemisphaerica)
atgactttttgtaagccatgttttgatttgaatgatCAGATGTTAAAAGC
TAAGACACCTTTACATAAAAGGTATGCTATTGTAACAGGTGGTCGGATCA
AGATTGGATTATATATTTCGTTACGTCTCCTACGTGATGGCTGTAATGTC
ATTGTCACCACACGATTCCCAAATTGTGCTCGTAATACTTACTCAGAGCT
CCCTGATTATGATGAATGGAAAGATAGGATTCAATTCAAAAAGCTAGATC
TCATGAACATGCATTCTGTTCAAGAGTTCATCTTATGGACTAAAAGTAAC
CTACCACATCTTGATATCCTTATTAATAATGCTGCTCAGACTATCTGGCG
CccatcaaaatatttcaatgacCTACAACAACAGGAAAATCAATTAGCCT
TAACAAATACAAACTCATTTGATAGCTTTACAATGAAACGCAGACACAAC
TCAAACCAGAAAAAACATTCCGATGATGATTCTGCAGCTATCTCACCAGC
AACTGAGGAACCTTTGTTGAAGAAACAAAAAGCAAGCTCTGACACTCCTA
CAATCGATATTGTTTCTAAGCCATCCACATCATCTTATAAAGCTAATGGT
AATGACCTTTTCCATAACCCTGTTAACAATAATAGTGTCTGGTTTCCTCA
TGGTCTTAAAGGTGACGATGGACAACAGTTGGATTTACGACCCATGAATT
CATGGCGGTTGAAACTGACTGATATTCCATTCTCAGAATTGTTACAAGTT
TTAACTGTTAATTCTGTTGcaccttttgttttgatttcccAACTTAAACC
ATTGTTACTCGCATCCCCCTTTGAGCGTAAATTTATCATCAATGTTTCTG
CCATGGAAGGACAATTCTCGCGCTTCAATAAAGGGCCACATCATGTCCAC
ACCAATATGGCAAAAGCTGCATTGAATATGTTGACCCGAACAACTGGCAT
AGAATTTGAACCTGAGAGAATTTATATGACTGCTGTTGACACAGGGTGGT
GTACAGATGAGCGCCCTTATGAACAGGCGCAGTATGAGAAAGAGAAAGGA
TTTCGTGTTCCTCTAACAGAAGAAGATGGGGCGGCCCGTGTTTACCACCC
AATTCATCATGGAatgaatgaaaacaataaaCCCTATTTTGCCGTCTTCT
TGAAAAACTATAATATTCATCATTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005090-exon-sc0000050-1491911889:123721..126257 | TCONS_00005090-exon-sc0000050-1491911889:123721..126257 | Clytia hemisphaerica | exon |
| TCONS_00005090-exon-sc0000050-1510915933:123721..126257 | TCONS_00005090-exon-sc0000050-1510915933:123721..126257 | Clytia hemisphaerica | exon |
| TCONS_00005090-exon-sc0000050-1575043694:123721..126257 | TCONS_00005090-exon-sc0000050-1575043694:123721..126257 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:123721..126257 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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