TCONS_00005088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005088
Unique NameTCONS_00005088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length795

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005088 ID=TCONS_00005088|Name=TCONS_00005088|organism=Clytia hemisphaerica|type=transcript|length=795bp
CCGGAAcaccggaacgttccggtgcACTTCCGGTGCAAGATTTTTCCGAA
TCGAGCTgcaccggaacgttccggtgcTTCCGGTGCATGATTTCCGCGAT
ATAAATGCGATAGCGTTCGCTACGCTAATCATGTAAAAAGTAACTACGGC
ATGCGCGAATTATCCAAATTCTAAAACCAAAATAAACATGttttagcaga
tttttttaGAAGAGAAATCAGATTCTTGGTGATAAAAGTGTGATAAAATT
GGATAAATTAAATGACAGTCacggaaatccttgcatttgcacggggtCCG
CTAGGTTGCATTTGCAACGggtcgaaatcgaaagtaacgCAAAAACCCGG
TGCAAATACAGTGGgtttttggaactctgtgcatttgcacagggtggaaa
attagaaaatttaagattttgcaatggttttacaatcaattaacatcatt
ctttttgtttagaatCAATATTAAGAAGatgaatcaaattcaataaGATA
TACCAGGTAATCCTTCTTTATTgtctttatattttgatttggaaaGTAAG
AATTGTTCCTTCTTATGCTGGCGTAAGGCTGTGGCGAAAGAGTCTATCCG
CACGGTCATACTTTCGATTTTCAAATACGGAACATACGAAACTTAGAATA
CGGGCATTGTGAGATAACGGTGTTTTTAATAATCCCGATCCTGCCACTCC
ATACTTATTTTTAATTCTCTAGCAGTCAAGATTGGATGAATTACTTCTTC
TCTCgctgtttcttcttttcattttcatttcagttttcattttta
Run BLAST on NCBI

transcript from alignment at sc0000050:118807..119601

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005088 ID=TCONS_00005088|Name=TCONS_00005088|organism=Clytia hemisphaerica|type=transcript|length=795bp|location=Sequence derived from alignment at sc0000050:118807..119601 (Clytia hemisphaerica)
taaaaatgaaaactgaaatgaaaatgaaaagaagaaacagcGAGAGAAGA
AGTAATTCATCCAATCTTGACTGCTAGAGAATTAAAAATAAGTATGGAGT
GGCAGGATCGGGATTATTAAAAACACCGTTATCTCACAATGCCCGTATTC
TAAGTTTCGTATGTTCCGTATTTGAAAATCGAAAGTATGACCGTGCGGAT
AGACTCTTTCGCCACAGCCTTACGCCAGCATAAGAAGGAACAATTCTTAC
tttccaaatcaaaatataaagacAATAAAGAAGGATTACCTGGTATATCt
tattgaatttgattcatCTTCTTAATATTGattctaaacaaaaagaatga
tgttaattgattgtaaaaccattgcaaaatcttaaattttctaattttcc
accctgtgcaaatgcacagagttccaaaaacCCACTGTATTTGCACCGGG
TTTTTGcgttactttcgatttcgaccCGTTGCAAATGCAACCTAGCGGac
cccgtgcaaatgcaaggatttccgtGACTGTCATTTAATTTATCCAATTT
TATCACACTTTTATCACCAAGAATCTGATTTCTCTTCtaaaaaaatctgc
taaaaCATGTTTATTTTGGTTTTAGAATTTGGATAATTCGCGCATGCCGT
AGTTACTTTTTACATGATTAGCGTAGCGAACGCTATCGCATTTATATCGC
GGAAATCATGCACCGGAAgcaccggaacgttccggtgcAGCTCGATTCGG
AAAAATCTTGCACCGGAAGTgcaccggaacgttccggtgTTCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002884XLOC_002884Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005088-exon-sc0000050-1491911889:118807..119601TCONS_00005088-exon-sc0000050-1491911889:118807..119601Clytia hemisphaericaexon
TCONS_00005088-exon-sc0000050-1510915933:118807..119601TCONS_00005088-exon-sc0000050-1510915933:118807..119601Clytia hemisphaericaexon
TCONS_00005088-exon-sc0000050-1575043694:118807..119601TCONS_00005088-exon-sc0000050-1575043694:118807..119601Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:118807..119601 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.93189	0.354216	1.3124	1.02386	1.01836	0.380067	0.633623	0.291479	0.83845	0.80622	0.943895	0.80413	0.799941	0.771155	0.577186	0.347788	0.625939	0.543124	0.587606	0.808149	0.51162	0.720613	0.245483	0.277123	1.1361	0.926327	0.764827	0.396268	1.97212	1.70661
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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