TCONS_00005085 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005085
Unique NameTCONS_00005085
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length664

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005085 ID=TCONS_00005085|Name=TCONS_00005085|organism=Clytia hemisphaerica|type=transcript|length=664bp
caaaggGTAATTTGTTATTTAGGAATCTGTGGACAAAAGATATATTGAGG
CATTTGACAAGGTCAAAAATCTTGAGAATTTCGAGGTCAGAAAAGAGTGG
AAAAGAAGGGCATCGAGagttgttaaaagtaataagacGTAAGGCTTTCT
TTTGAAGGATAAATATAGGCTTGGAGGTCAGTAAGACCCCAGAGTTGGCA
ACCAATATAATATTAATAGATGGGAATTGAAGATGTGAATGAAAAAGAGC
ATAATAAATGTTAACTAAggtttttgttgaaacataGTGCCTGAGCTTAG
ATATAATACCATTTGCTCTGGCAAGTTTAGCTGATAAAGATGTAGTGTGG
GCTTTCCAGTTGAAAGTTCCAGTTGCATGTCAATCAAAACGCCAAGATAT
TTGatatttaaactttgaaaaattttcttacctccAATTTTACGAAAAGG
Aacaaaaggaagaatttttcgacagtgtctgaaaattaaaaattctgttt
ttccaGCGTTAAGGGATATTTTATTGGCTTTGAGCCAAGTTTGGAGGGAT
CTTAGGTCACGATTGACTCTGTTGCAAAGGGAAAGANAATTTTCTAGAAT
AAAATTGACGTTGTGAGATTGGTTTAATAATTCCGGGGGTGATCCATGGT
TTAGCCCGagtttt
Run BLAST on NCBI

protein sequence of TCONS_00005085-protein

>TCONS_00005085-protein ID=TCONS_00005085-protein|Name=TCONS_00005085-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
KLGLNHGSPPELLNQSHNVNFILENXLSLCNRVNRDLRSLQTWLKANKIS
LNAGKTEFLIFRHCRKILPFVPFRKIGGKKIFQSLNIKYLGVLIDMQLEL
STGKPTLHLYQLNLPEQMVLYLSSGTMFQQKP
Run BLAST on NCBI

transcript from alignment at sc0000050:104921..105584

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005085 ID=TCONS_00005085|Name=TCONS_00005085|organism=Clytia hemisphaerica|type=transcript|length=664bp|location=Sequence derived from alignment at sc0000050:104921..105584 (Clytia hemisphaerica)
aaaactCGGGCTAAACCATGGATCACCCCCGGAATTATTAAACCAATCTC
ACAACGTCAATTTTATTCTAGAAAATTNTCTTTCCCTTTGCAACAGAGTC
AATCGTGACCTAAGATCCCTCCAAACTTGGCTCAAAGCCAATAAAATATC
CCTTAACGCtggaaaaacagaatttttaattttcagacactgtcgaaaaa
ttcttccttttgtTCCTTTTCGTAAAATTggaggtaagaaaatttttcaa
agtttaaatatCAAATATCTTGGCGTTTTGATTGACATGCAACTGGAACT
TTCAACTGGAAAGCCCACACTACATCTTTATCAGCTAAACTTGCCAGAGC
AAATGGTATTATATCTAAGCTCAGGCACtatgtttcaacaaaaaccTTAG
TTAACATTTATTATGCTCTTTTTCATTCACATCTTCAATTCCCATCTATT
AATATTATATTGGTTGCCAACTCTGGGGTCTTACTGACCTCCAAGCCTAT
ATTTATCCTTCAAAAGAAAGCCTTACgtcttattacttttaacaactCTC
GATGCCCTTCTTTTCCACTCTTTTCTGACCTCGAAATTCTCAAGATTTTT
GACCTTGTCAAATGCCTCAATATATCTTTTGTCCACAGATTCCTAAATAA
CAAATTACcctttg

Coding sequence (CDS) from alignment at sc0000050:104921..105584

>TCONS_00005085 ID=TCONS_00005085|Name=TCONS_00005085|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at sc0000050:104921..105584 (Clytia hemisphaerica)
aaactCGGGCTAAACCATGGATCACCCCCGGAATTATTAAACCAATCTCA
CAACGTCAATTTTATTCTAGAAAATTNTCTTTCCCTTTGCAACAGAGTCA
ATCGTGACCTAAGATCCCTCCAAACTTGGCTCAAAGCCAATAAAATATCC
CTTAACGCtggaaaaacagaatttttaattttcagacactgtcgaaaaat
tcttccttttgtTCCTTTTCGTAAAATTggaggtaagaaaatttttcaaa
gtttaaatatCAAATATCTTGGCGTTTTGATTGACATGCAACTGGAACTT
TCAACTGGAAAGCCCACACTACATCTTTATCAGCTAAACTTGCCAGAGCA
AATGGTATTATATCTAAGCTCAGGCACtatgtttcaacaaaaaccTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002881XLOC_002881Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005085-proteinTCONS_00005085-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005085-exon-sc0000050-1491911889:104921..105584TCONS_00005085-exon-sc0000050-1491911889:104921..105584Clytia hemisphaericaexon
TCONS_00005085-exon-sc0000050-1510915933:104921..105584TCONS_00005085-exon-sc0000050-1510915933:104921..105584Clytia hemisphaericaexon
TCONS_00005085-exon-sc0000050-1575043694:104921..105584TCONS_00005085-exon-sc0000050-1575043694:104921..105584Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:104921..105584 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06741	1.44601	1.57936	2.30043	0.783897	0.877815	0.804325	1.80023	1.30527	0.234457	1.364	1.29283	1.31548	0.790598	0.551684	0.437214	0.529187	0.458946	0.479653	0.410809	0.96586	0.972243	0.706129	0.402016	1.37842	1.09562	0.902919	1.39451	0.452296	0.852138
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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