TCONS_00005077 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005077
Unique NameTCONS_00005077
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005077 ID=TCONS_00005077|Name=TCONS_00005077|organism=Clytia hemisphaerica|type=transcript|length=275bp
gtttttttcttcatttatggGAGGCTACAGTTATAAATCGGaattaaatt
atgaaaattttgatacgGATAAGCTCATATATAACCAAGGAATTGATAAC
AACATACACCAcacattttttggaattataaatatgaaaactgattgtaa
atacattttttttattacccaatactttcaacattttctaAACTGAATTA
TATTGTGCTCAATATTTCCTATCATAATTTGAACTTGAACATAGATATGG
TGAAAATACGGTGCTGCTAaggaag
Run BLAST on NCBI

transcript from alignment at sc0000050:50860..51134

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005077 ID=TCONS_00005077|Name=TCONS_00005077|organism=Clytia hemisphaerica|type=transcript|length=275bp|location=Sequence derived from alignment at sc0000050:50860..51134 (Clytia hemisphaerica)
cttcctTAGCAGCACCGTATTTTCACCATATCTATGTTCAAGTTCAAATT
ATGATAGGAAATATTGAGCACAATATAATTCAGTTtagaaaatgttgaaa
gtattgggtaataaaaaaaatgtatttacaatcagttttcatatttataa
ttccaaaaaatgtgTGGTGTATGTTGTTATCAATTCCTTGGTTATATATG
AGCTTATCcgtatcaaaattttcataatttaattCCGATTTATAACTGTA
GCCTCccataaatgaagaaaaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002873XLOC_002873Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005077-exon-sc0000050-1491911889:50860..51134TCONS_00005077-exon-sc0000050-1491911889:50860..51134Clytia hemisphaericaexon
TCONS_00005077-exon-sc0000050-1510915933:50860..51134TCONS_00005077-exon-sc0000050-1510915933:50860..51134Clytia hemisphaericaexon
TCONS_00005077-exon-sc0000050-1575043694:50860..51134TCONS_00005077-exon-sc0000050-1575043694:50860..51134Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:50860..51134 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.58572	2.57721	0.598477	0	0.71281	0	0	0	1.78167	2.75861	0.535515	1.40811	0.351537	0.365075	0.600282	0.966292	0.793595	0.406705	2.24754	1.76392	1.53316	1.49565	3.03026	1.65297	0	0.506485	7.97256	2.32051	4.10672	2.98864
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005077 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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