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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005076 ID=TCONS_00005076|Name=TCONS_00005076|organism=Clytia hemisphaerica|type=transcript|length=1808bp
ccctaaaaaagccgggatttgacctctctctgttactaaaaatagaaaca
cggaggtcaaaaaccggcttttttgggtgcttctgtcatcttgacttacg
catatcaagaattggtTTGTCATGAGGTCATGACCCATTCCATTCTTCCG
ACTGCTTCAACTTGTTTGAGAGGTTTCGAAGCGTGCTGGTGTATGCATTT
GTCTATAATgcatttttatcattattttattttttgggtTATTATTTTAG
TCTGATTTTTTAGTTCCAAGTCCCCTCATATTAAGTTTTAACgagagaaa
aagtttaaaattctttattaatttattatttttaagtttaaaaggAGTAG
TGGTAAAAAGCTATCGTGTGTATATATTCTTGTGCATATTTATAACCAAC
CAACTTATATGATCTATTATAAACTACTGCTTTATACATTTTACTTTTAG
TGAGACTTTCGAAATCTGACAGACTACGGTTTACTACTTAGGTGGTACAA
CCTAGCACTAGTTTTTAAAACCGATTTTTTCTTTTACGACTCGAAAATTC
CGGCTTTTCATACTTTCTTTCGTAATTCTTATCCTTCTTGTCTCGAAGTG
GTAAGTTTGGGAGAGTTTACACGCTAGCTATATACTTTTTTAACTATTCT
TGCTTCACAGCTTGTACTGAACACTTTTTGATACTTGAGAAGGAAGCTTA
TTTGATATGATTTTAGACCTCCTCTCGATGAGTCATTACAAAAAcaatag
tttttattttttgcacactTAAAAACTTCTCTTTTCTCTATCTGTTCTTT
TGTTCTCTCGAACAGCCAGCTGGCTCTGGTCTGTCACTAGATTACTTCCT
CTTTCCGGACGGCTCTTAATTTTTATCTGACGCTCTAACACTCGGTAAAA
ACCGACCAAATTTATGACTCTTAAACCCTTATAAAAAGGCTTGAAAATGC
ACAGTCGTCCGTGTGTAATTTGTAGTTTATTTAATTATACTGCTGGTCAG
TATTTTATCTAGACCTTATCTTCCCagtcttattttgttctttagtttat
tttttgcATCTTTTCCTTAACAAATATTTCATCGTCTCCCAAGTTCGTTT
AGACACCAAAAAATAAGTCCTTACTTCgatattacagctttgtactaTAT
TTTTTGGTGAGATTTTCGTACAACCTAAAGTAGTACACGAGAAGCTTGGC
TGAAAAGTGAAAGTCTTAGCGGGATTTCCTATCTGTAAGAAAACGTTTCT
AAGAAATTCTCCAGTTTGAGAGGAAAGCTTCTAATGATCATTACTTCGGG
ATGTGCGcaaattttcccattttgtaCATTTGACTGTCTCTTCTATACTA
TTATTTACACAAAACAGTCGAGTTCCtatctttttttcatttcgaaTGTA
CATAGGTTCAAGTTTTGATGATTGTCTTAAATTATCCCCTTAGATTGATT
TCCTTCCCAAATGTTTATTTACATAGAGACGGAAATCGATAGGCATTTAA
CTTTTCGAGACAAGCTAAAACTTGGGGGAGTCGTGGAGTCTAAATCATAT
ATAGGCTTCCTCCCATTATCTTTAGTATTCTTTATTATCCCTCTCTGCCT
TGACTAATGGAAATGTTCTGGACTTTTTGGGGTTTAAAAAAGATACGCTA
TGATATACTTACTTCATTTAAAGAAAGAacttaaataagaaaatttaggA
CAATCTAAATTCGGAACGCTTATATTCCAGTGTTtaataaaatagtaaaa
aattgttataatatTACATTATTTATATATATCATAAAGTTTGGCTCGTG
AAGTTTCA Run BLAST on NCBI transcript from alignment at sc0000050:28990..30797 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005076 ID=TCONS_00005076|Name=TCONS_00005076|organism=Clytia hemisphaerica|type=transcript|length=1808bp|location=Sequence derived from alignment at sc0000050:28990..30797 (Clytia hemisphaerica)
TGAAACTTCACGAGCCAAACTTTATGATATATATAAATAATGTAatatta
taacaattttttactattttattaAACACTGGAATATAAGCGTTCCGAAT
TTAGATTGTcctaaattttcttatttaagtTCTTTCTTTAAATGAAGTAA
GTATATCATAGCGTATCTTTTTTAAACCCCAAAAAGTCCAGAACATTTCC
ATTAGTCAAGGCAGAGAGGGATAATAAAGAATACTAAAGATAATGGGAGG
AAGCCTATATATGATTTAGACTCCACGACTCCCCCAAGTTTTAGCTTGTC
TCGAAAAGTTAAATGCCTATCGATTTCCGTCTCTATGTAAATAAACATTT
GGGAAGGAAATCAATCTAAGGGGATAATTTAAGACAATCATCAAAACTTG
AACCTATGTACAttcgaaatgaaaaaaagataGGAACTCGACTGTTTTGT
GTAAATAATAGTATAGAAGAGACAGTCAAATGtacaaaatgggaaaattt
gCGCACATCCCGAAGTAATGATCATTAGAAGCTTTCCTCTCAAACTGGAG
AATTTCTTAGAAACGTTTTCTTACAGATAGGAAATCCCGCTAAGACTTTC
ACTTTTCAGCCAAGCTTCTCGTGTACTACTTTAGGTTGTACGAAAATCTC
ACCAAAAAATAtagtacaaagctgtaatatcGAAGTAAGGACTTATTTTT
TGGTGTCTAAACGAACTTGGGAGACGATGAAATATTTGTTAAGGAAAAGA
TgcaaaaaataaactaaagaacaaaataagactGGGAAGATAAGGTCTAG
ATAAAATACTGACCAGCAGTATAATTAAATAAACTACAAATTACACACGG
ACGACTGTGCATTTTCAAGCCTTTTTATAAGGGTTTAAGAGTCATAAATT
TGGTCGGTTTTTACCGAGTGTTAGAGCGTCAGATAAAAATTAAGAGCCGT
CCGGAAAGAGGAAGTAATCTAGTGACAGACCAGAGCCAGCTGGCTGTTCG
AGAGAACAAAAGAACAGATAGAGAAAAGAGAAGTTTTTAagtgtgcaaaa
aataaaaactattgTTTTTGTAATGACTCATCGAGAGGAGGTCTAAAATC
ATATCAAATAAGCTTCCTTCTCAAGTATCAAAAAGTGTTCAGTACAAGCT
GTGAAGCAAGAATAGTTAAAAAAGTATATAGCTAGCGTGTAAACTCTCCC
AAACTTACCACTTCGAGACAAGAAGGATAAGAATTACGAAAGAAAGTATG
AAAAGCCGGAATTTTCGAGTCGTAAAAGAAAAAATCGGTTTTAAAAACTA
GTGCTAGGTTGTACCACCTAAGTAGTAAACCGTAGTCTGTCAGATTTCGA
AAGTCTCACTAAAAGTAAAATGTATAAAGCAGTAGTTTATAATAGATCAT
ATAAGTTGGTTGGTTATAAATATGCACAAGAATATATACACACGATAGCT
TTTTACCACTACTccttttaaacttaaaaataataaattaataaagaatt
ttaaactttttctctcGTTAAAACTTAATATGAGGGGACTTGGAACTAAA
AAATCAGACTAAAATAATAacccaaaaaataaaataatgataaaaatgcA
TTATAGACAAATGCATACACCAGCACGCTTCGAAACCTCTCAAACAAGTT
GAAGCAGTCGGAAGAATGGAATGGGTCATGACCTCATGACAAaccaattc
ttgatatgcgtaagtcaagatgacagaagcacccaaaaaagccggttttt
gacctccgtgtttctatttttagtaacagagagaggtcaaatcccggctt
ttttaggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005076-exon-sc0000050-1491911889:28990..30797 | TCONS_00005076-exon-sc0000050-1491911889:28990..30797 | Clytia hemisphaerica | exon |
| TCONS_00005076-exon-sc0000050-1510915933:28990..30797 | TCONS_00005076-exon-sc0000050-1510915933:28990..30797 | Clytia hemisphaerica | exon |
| TCONS_00005076-exon-sc0000050-1575043694:28990..30797 | TCONS_00005076-exon-sc0000050-1575043694:28990..30797 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:28990..30797 . |
Blast
The following BLAST results are available for this feature:
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