TCONS_00005075 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005075
Unique NameTCONS_00005075
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length654

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005075 ID=TCONS_00005075|Name=TCONS_00005075|organism=Clytia hemisphaerica|type=transcript|length=654bp
TCTTGAACTCTTAGTCTTGAATTTAGTTATATTGAattagtttaaatttt
tttatgaaatttttttcattacaaatatttttagtttGGGTATCTAGAAA
TGTATCGAGTTTGAAAATGTCTTGAACCATTTATAAAAAAGAACTCAcga
caaagaatttttttgaagctttGATTAAAACATCGCATATTCAGGAAACA
ACGAACAAGAACTTTCTTACTTTTAAGAGTTACTGTACTGTAAATTGACT
CGATATTTTTTCTAGAAATCCTTTATATAAAGAATTTTCGTAGAAAACAC
TCTAATTCTGAAAACTGTTTATACCATATGTGATATTTTGCCAGCTACGA
TCTACCCttatgttcaactttttttggcCTTATTATTTCTCAAGAatgtt
gattttgaaatttttaaaattgagcCTTTACAGTTTTATCGCTTATTCCT
GCCGTTTTCAAGTACTCAGAACCATGAGAGAACACCTCTAGGCCAAACAG
AAATTTGGTCTTCTAAGTAAATTTCTTGCAacatttgtttttcaaaatta
aatcgtAGAAATCAAATTAGaagaattatttttattatatgaatttaaag
aaagaatacaattgtattgaaaattattgaataataataagcattttctt
ggaa
Run BLAST on NCBI

transcript from alignment at sc0000050:21061..21714

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005075 ID=TCONS_00005075|Name=TCONS_00005075|organism=Clytia hemisphaerica|type=transcript|length=654bp|location=Sequence derived from alignment at sc0000050:21061..21714 (Clytia hemisphaerica)
ttccaagaaaatgcttattattattcaataattttcaatacaattgtatt
ctttctttaaattcatataataaaaataattcttCTAATTTGATTTCTac
gatttaattttgaaaaacaaatgtTGCAAGAAATTTACTTAGAAGACCAA
ATTTCTGTTTGGCCTAGAGGTGTTCTCTCATGGTTCTGAGTACTTGAAAA
CGGCAGGAATAAGCGATAAAACTGTAAAGgctcaattttaaaaatttcaa
aatcaacatTCTTGAGAAATAATAAGgccaaaaaaagttgaacataaGGG
TAGATCGTAGCTGGCAAAATATCACATATGGTATAAACAGTTTTCAGAAT
TAGAGTGTTTTCTACGAAAATTCTTTATATAAAGGATTTCTAGAAAAAAT
ATCGAGTCAATTTACAGTACAGTAACTCTTAAAAGTAAGAAAGTTCTTGT
TCGTTGTTTCCTGAATATGCGATGTTTTAATCaaagcttcaaaaaaattc
tttgtcgTGAGTTCTTTTTTATAAATGGTTCAAGACATTTTCAAACTCGA
TACATTTCTAGATACCCaaactaaaaatatttgtaatgaaaaaaatttca
taaaaaaatttaaactaatTCAATATAACTAAATTCAAGACTAAGAGTTC
AAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002871XLOC_002871Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005075-exon-sc0000050-1491911889:21061..21714TCONS_00005075-exon-sc0000050-1491911889:21061..21714Clytia hemisphaericaexon
TCONS_00005075-exon-sc0000050-1510915933:21061..21714TCONS_00005075-exon-sc0000050-1510915933:21061..21714Clytia hemisphaericaexon
TCONS_00005075-exon-sc0000050-1575043694:21061..21714TCONS_00005075-exon-sc0000050-1575043694:21061..21714Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:21061..21714 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.10242	3.03204	0.631883	0.883142	1.29017	0.594713	0.204999	0	0.134366	0.0832169	0	0.15929	0.0530228	0.0550647	0.362165	0	0	0	0	0	0.53958	0.338385	11.5178	8.64305	0	0.229181	0.655915	1.75003	10.7071	10.368
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005075 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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