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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005060 ID=TCONS_00005060|Name=TCONS_00005060|organism=Clytia hemisphaerica|type=transcript|length=4625bpRun BLAST on NCBI transcript from alignment at sc0000050:675116..690201- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005060 ID=TCONS_00005060|Name=TCONS_00005060|organism=Clytia hemisphaerica|type=transcript|length=15086bp|location=Sequence derived from alignment at sc0000050:675116..690201- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00005060 vs. Swiss-Prot (Human)
Match: SF3B1 (Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3) HSP 1 Score: 1804.26 bits (4672), Expect = 0.000e+0 Identity = 935/1237 (75.59%), Postives = 1028/1237 (83.10%), Query Frame = 2
Query: 98 FVLGGKTPD--VRSRTYMDVLAEQRLVAEKAKVIKKIQDQHKNGE-----QPQAQSDAKKKRRRWDQTATEEAPAKKK----WDQAETPSNT---RWDETPGRQKQTGAETPGTVHGSE----TPG-TMRGEETPGRTPGATPSTRAWEATPSYIXXXXXXXXXXXXXXXXXQSTRRKRWDETPSQQATETPGRTPGWAETPKTDRIGSEXXXXXXXXXXXKKRSRWDETP--QVGGATPGSQTPSAATPSMGTPSGNLNSLMGTPSATPGGTVAMQMQTPTPGHLISMTPEQMQAYRWEKEIDDRNRPLTDDELDALMPFEGYKILQPPANYQPIRTPARKLTATPTPINMGTGFRMQTDERGNVKGVVEEQPPGNLPSLKPDDYQYFDKLLVDVDETTLSSEEQRERKIMKLLLKIKNGTPPMRKAALRQVTDKAREMGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRNLVEIIEHGLVDEQQKVRXXXXXXXXXXXESATPYGIESFDSVLKPLWKGIKQHRGKGLAAFLKAIGYLIPLMDAEYAYHYTREVMIILIREFQSPDEEMKKIVLKVVKQCCATDGVEANYIKEEILPEFFKNFWTHRMALDRRNYRQLVDTTVEVANKVGAAHIVGRVVDDLKDENEQYRKMVLETIEKVMANLGASEIDSRLEEQLIDGILYAFQEQTNEDVVMLNGFGTVINAFGARTKPYLPQICGTILWRLSNKNAKVRQQAADLIARTSVVMKTCGEEKLMGHLGVVLYESFGEEYPEVLGSILGAMKSIVNVIGMSKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEHVSAREWMRICFXXXXXXKAHKKAIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIXLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACAAIKHMSIGVFGFGCEDALTHLINHVWPNIFETSPHVINAVIEALEGFRVGLGPLKLMQYVMQGLFHPARKVRDIYWKIYNGLYIASQDALVAGYPSIPNEPENSFLRNELHYI 3745
F GGKTPD + +RTYMDV+ EQ L E+ ++ +++ ++ K GE A K++RRWDQTA + A K WDQAETP +T RWDETPGR K G+ETPG GS+ TP T G TPGR G TP ATP + G S R+ RWDETP + +TPG GWAETP+TDR G ++ G TPTPG K++SRWDETP Q+GG+TP + TP TP GT AM M TPTPGH++SMTPEQ+QA+RWE+EID+RNRPL+D+ELDA+ P EGYK+L PPA Y PIRTPARKLTATPTP+ TGF MQT++R V +QP GNLP LKPDD QYFDKLLVDVDE+TLS EEQ+ERKIMKLLLKIKNGTPPMRKAALRQ+TDKARE GAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDN+DEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLR+LVEIIEHGLVDEQQKVRTI+ALAIAALAE+ATPYGIESFDSVLKPLWKGI+QHRGKGLAAFLKAIGYLIPLMDAEYA +YTREVM+ILIREFQSPDEEMKKIVLKVVKQCC TDGVEANYIK EILP FFK+FW HRMALDRRNYRQLVDTTVE+ANKVGAA I+ R+VDDLKDE EQYRKMV+ETIEK+M NLGA++ID +LEEQLIDGILYAFQEQT ED VMLNGFGTV+NA G R KPYLPQICGT+LWRL+NK+AKVRQQAADLI+RT+VVMKTC EEKLMGHLGVVLYE GEEYPEVLGSILGA+K+IVNVIGM KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAE+VSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP DVLATLLNNLKVQERQNRV CTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA A ++HMS+GV+GFGCED+L HL+N+VWPN+FETSPHVI AV+ ALEG RV +GP +++QY +QGLFHPARKVRD+YWKIYN +YI SQDAL+A YP I N+ +N+++R EL YI
Sbjct: 136 FADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK--GSETPGATPGSKIWDPTPSHTPAGAATPGR--GDTPG----HATPGH--------------GGATSSARKNRWDETPKTE-RDTPGHGSGWAETPRTDR-GGDSIGETPTPGASKRKSRWDETPASQMGGSTP----------------------VLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFP-EGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQTEDR--TMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRV--------------------CTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYI 1303 The following BLAST results are available for this feature:
BLAST of TCONS_00005060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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