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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005059 ID=TCONS_00005059|Name=TCONS_00005059|organism=Clytia hemisphaerica|type=transcript|length=656bp
GAACAAGACTGACCACCACTTGGAGATGTTTGAAGAacacgaagatgaaa
ataataacaataatgcACCGCTTCTCAATATCTCCATGGAAACAATACAA
AACTTCTTGTTTGGACGAAAAATGAAAACTTGGCATGATTCTATGAGATC
TTCAAACGATGACTTGGTGCAAATCGAACATATGGATTTGATAGATTCAC
TTTCAGCAACAATGCCAAGTCAATTACGCATCGACTCCTCTACCATTCCT
GGTCAAACTCTTGGTGTTTTCTCATCCTCCTGGATCAAACAAGGAACGAA
AATGGGACCTTTCACAGGTCGCTTAGTACCGAAAGATGAACCCTTCAAAC
GGGACTCGAAATATGTTTGGGAGGTCTTCGATTCAAACGGCCAAGTCAGT
CATTTTATTGATGGTGAAGATGAGCTAGATCGTAACTGGATGTGTTACAT
ACAATGTGCTCGAAGTGATCAGGAACAAAACTTGGAAGTCGTTCAACATC
CTGATTCAAGTATCTTTTACTACGCTCTCAAAGATGTTCCACCGAACCAG
GAGCTTTTAGTTTGGTATAGCTCAGCTGTAGAGTGTTTCTTAGGCATTCC
ACAAAGCGGACCGATCGTGATGGATAAACTGaacaataataacaacaaca
aacCAA Run BLAST on NCBI protein sequence of TCONS_00005059-protein >TCONS_00005059-protein ID=TCONS_00005059-protein|Name=TCONS_00005059-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
NKTDHHLEMFEEHEDENNNNNAPLLNISMETIQNFLFGRKMKTWHDSMRS
SNDDLVQIEHMDLIDSLSATMPSQLRIDSSTIPGQTLGVFSSSWIKQGTK
MGPFTGRLVPKDEPFKRDSKYVWEVFDSNGQVSHFIDGEDELDRNWMCYI
QCARSDQEQNLEVVQHPDSSIFYYALKDVPPNQELLVWYSSAVECFLGIP
QSGPIVMDKLNNNNNNKP Run BLAST on NCBI transcript from alignment at sc0000050:669270..672655- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005059 ID=TCONS_00005059|Name=TCONS_00005059|organism=Clytia hemisphaerica|type=transcript|length=3386bp|location=Sequence derived from alignment at sc0000050:669270..672655- (Clytia hemisphaerica)
GAACAAGACTGACCACCACTTGGAGATGTTTGAAGAACACGAAGATGAAA
ATAATAACAATAATGCACCGCTTCTCAATATCTCCATGGAAACAATACAA
AACTTCTTGTTTGGACGAAAAATGAAAACTTGGCATGATTCTATGAGATG
TAAGTGCGTGAATTTCAACTTTCTAGATTAAAGAACGGCATAAACTGCAC
AGTACAGCCTATCTGCGACTCAATTCTTTGTTCGAAGACAACTTCTGCAG
CGAGAAAAGTTGTGAAATTTAACATTTTGGAATTTGATAACGCTTAAAGT
TATGTTGCAGCGTAGCCTATACTAAACGTCACCGCGTTTTTTCCTACGCA
ATCTTACTATACTAAATGAGTTTATGAAAAATGTCTGTAACGCTAGCCCA
GTAACATATGTTAAGGTTTCTAAAATTTGAACGCCGCGGCTGGAAAACCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCGATGTCAGGAATTAACCCACATTATAGTATTTTAAA
GGCTTTTGATGCGCAAGCAAAACCGTTAACCGGCGTTTACGACGACGGGA
ACCGTCTAGTTAACATCTATTCCACTTTGCGACTTTTTCGAATGTTTGGA
GCCCAGGTTTTCGGGCTCTAAACATTCGATTTTTTGACGTCACTTTAAAC
TTTCGAAGCTCTTGCAGTAGCAAAAAATTCGAATTTGCGTCATTACACTT
GAAAGGCTTCTATTTTTCGAAAATCGTCAAAGTGGAAGTCACTAAGACCA
TGTTCAGACTTTATGATTCCGTATCGTTCCGAAACGAAACGGTTCCAAAA
CAAGTGTGAACGTCAAAAAAGAGGGATGAGCTGGAGTTTTTATAAGATAC
TTCACTAATTGGTCATTTGAAGTGATAGAGATGACGCGTTCTTTAGAAAA
AGTAATGAAATTAACTTTACGACCAACCAAATCACATAAGAGCTTGAAAA
ACTCCTGCTTGTCCCAAAAAAGAAGACGTTACAAAGCAAAACAGATTGAA
ACGGTTGCGCTCCACTATTTTCATCGGAACGGAACTGCTCCGTTTTCTTG
CTCCGAAACGTTCTGAAACCAATATGAACACTCTCGATCCGTAACGGAAA
CCATACTGGAACGATACGAAACTGTAACGTCTGAACATGGTCTAAGAAAC
GGGACGAAAAATCCCGGTTTTCAGTGAGGTGCTCGCTAGTTGCAGCGCTT
TGGTTCTTTGCGATTTCCCGAGCTGGTGTGCATAATTTTCTTAACCTAAA
TAAATTTGTTGACAAAGTAAAGTTTTCTTTCCAACTATTATAAAATACCT
TTTCAAACCAAACCTCAAAGACTGTAAAGTTCTCTTCGCAAATTTAAAGA
TTTTTTCCCATTTGCGTTCGATTTGTAATTATGAATGTCTCGATAACTCC
AACAATTTCATTTTCCCATTGTCCATTCGAGTTACGGAAACTCCATTGTA
CGAATCGCCGTTCTACTTTTCCTTTCTTCAGCTTCAAACGATGACTTGGT
GCAAATCGAACATATGGATTTGATAGATTCACTTTCAGCAACAATGCCAA
GTCAATTACGCATCGACTCCTCTACCATTCCTGGTCAAACTCTTGGTGTT
TTCTCATCCTCCTGGATCAAACAAGGAACGAAAATGGGACCTTTCACAGG
TCGCTTAGTACCGAAAGATGAACCCTTCAAACGGGACTCGAAATATGTTT
GGGAGGTTAGTCAGTATTTGAATACAATTTCAGTGTTTAAAGTTTTTCCG
ACTCAGACGGATTCCCGTCTCATTAAGATTTTTTCAATTTTACATAATTC
ACCAGAATTCACCATATTATTCTAACTTGCAGTGTAAAATCCATTTTCCG
TCTCAAACGAAAGGTTTTCTTGTATTTTTCATCATAATTAACATGGTCGA
GTTCTAATGATCATTCCGGTCGTATTAGATTACAGCGTGTCCGTAAAAAA
GCGGAATTTATTCCCCATAATTAATACAAAAATTTAAGTTATATTTATTG
ATTTCTTCTTTAAAAATATTGAAATTTGGAAATTGAATACTTTCGGATTG
ATCCAAATCAAATAAGACGAAAGATATTAAAGGATCATGTATAAACTACA
TAAATTTGACACAGACACGCTATCTTTATGTTCCTGGTTTTTTTTACCAT
TAGGTCTTCGATTCAAACGGCCAAGTCAGTCATTTTATTGATGGTGAAGA
TGAGCTAGATCGTAACTGGATGTGTTACATACAATGTGCTCGAAGTGATC
AGGAACAAAACTTGGAAGTCGTTCAACATCCTGATTCAAGTATCTTTTAC
TACGCTCTCAAAGATGTTCCACCGAACCAGGAGCTTTTAGTTTGGTATAG
CTCAGCTGTAGAGTGTTTCTTAGGCATTCCACAAAGCGGACCGATCGTGA
TGGATAAACTGAACAATAATAACAACAACAAACCAA Coding sequence (CDS) from alignment at sc0000050:669270..672655- >TCONS_00005059 ID=TCONS_00005059|Name=TCONS_00005059|organism=Clytia hemisphaerica|type=CDS|length=1962bp|location=Sequence derived from alignment at sc0000050:669270..672655- (Clytia hemisphaerica)
GTCTTCGATTCAAACGGCCAAGTCAGTCATTTTATTGATGGTGAAGATGA
GCTAGATCGTAACTGGATGTGTTACATACAATGTGCTCGAAGTGATCAGG
AACAAAACTTGGAAGTCGTTCAACATCCTGATTCAAGTATCTTTTACTAC
GCTCTCAAAGATGTTCCACCGAACCAGGAGCTTTTAGTTTGGTATAGCTC
AGCTGTAGAGTGTTTCTTAGGCATTCCACAAAGCGGACCGATCGTGATGG
ATAAACTGAACAATAATAACAACAACAAACCACTTCAAACGATGACTTGG
TGCAAATCGAACATATGGATTTGATAGATTCACTTTCAGCAACAATGCCA
AGTCAATTACGCATCGACTCCTCTACCATTCCTGGTCAAACTCTTGGTGT
TTTCTCATCCTCCTGGATCAAACAAGGAACGAAAATGGGACCTTTCACAG
GTCGCTTAGTACCGAAAGATGAACCCTTCAAACGGGACTCGAAATATGTT
TGGGAGAACAAGACTGACCACCACTTGGAGATGTTTGAAGAACACGAAGA
TGAAAATAATAACAATAATGCACCGCTTCTCAATATCTCCATGGAAACAA
TACAAAACTTCTTGTTTGGACGAAAAATGAAAACTTGGCATGATTCTATG
AGATGTCTTCGATTCAAACGGCCAAGTCAGTCATTTTATTGATGGTGAAG
ATGAGCTAGATCGTAACTGGATGTGTTACATACAATGTGCTCGAAGTGAT
CAGGAACAAAACTTGGAAGTCGTTCAACATCCTGATTCAAGTATCTTTTA
CTACGCTCTCAAAGATGTTCCACCGAACCAGGAGCTTTTAGTTTGGTATA
GCTCAGCTGTAGAGTGTTTCTTAGGCATTCCACAAAGCGGACCGATCGTG
ATGGATAAACTGAACAATAATAACAACAACAAACCACTTCAAACGATGAC
TTGGTGCAAATCGAACATATGGATTTGATAGATTCACTTTCAGCAACAAT
GCCAAGTCAATTACGCATCGACTCCTCTACCATTCCTGGTCAAACTCTTG
GTGTTTTCTCATCCTCCTGGATCAAACAAGGAACGAAAATGGGACCTTTC
ACAGGTCGCTTAGTACCGAAAGATGAACCCTTCAAACGGGACTCGAAATA
TGTTTGGGAGAACAAGACTGACCACCACTTGGAGATGTTTGAAGAACACG
AAGATGAAAATAATAACAATAATGCACCGCTTCTCAATATCTCCATGGAA
ACAATACAAAACTTCTTGTTTGGACGAAAAATGAAAACTTGGCATGATTC
TATGAGATGTCTTCGATTCAAACGGCCAAGTCAGTCATTTTATTGATGGT
GAAGATGAGCTAGATCGTAACTGGATGTGTTACATACAATGTGCTCGAAG
TGATCAGGAACAAAACTTGGAAGTCGTTCAACATCCTGATTCAAGTATCT
TTTACTACGCTCTCAAAGATGTTCCACCGAACCAGGAGCTTTTAGTTTGG
TATAGCTCAGCTGTAGAGTGTTTCTTAGGCATTCCACAAAGCGGACCGAT
CGTGATGGATAAACTGAACAATAATAACAACAACAAACCACTTCAAACGA
TGACTTGGTGCAAATCGAACATATGGATTTGATAGATTCACTTTCAGCAA
CAATGCCAAGTCAATTACGCATCGACTCCTCTACCATTCCTGGTCAAACT
CTTGGTGTTTTCTCATCCTCCTGGATCAAACAAGGAACGAAAATGGGACC
TTTCACAGGTCGCTTAGTACCGAAAGATGAACCCTTCAAACGGGACTCGA
AATATGTTTGGGAGAACAAGACTGACCACCACTTGGAGATGTTTGAAGAA
CACGAAGATGAAAATAATAACAATAATGCACCGCTTCTCAATATCTCCAT
GGAAACAATACAAAACTTCTTGTTTGGACGAAAAATGAAAACTTGGCATG
ATTCTATGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005059-exon-sc0000050-1575043694:672507..672655 | TCONS_00005059-exon-sc0000050-1575043694:672507..672655 | Clytia hemisphaerica | exon |
| TCONS_00005059-exon-sc0000050-1575043694:670001..670224 | TCONS_00005059-exon-sc0000050-1575043694:670001..670224 | Clytia hemisphaerica | exon |
| TCONS_00005059-exon-sc0000050-1575043694:669270..669552 | TCONS_00005059-exon-sc0000050-1575043694:669270..669552 | Clytia hemisphaerica | exon |
| TCONS_00005059-exon-sc0000050-1510915933:672507..672655 | TCONS_00005059-exon-sc0000050-1510915933:672507..672655 | Clytia hemisphaerica | exon |
| TCONS_00005059-exon-sc0000050-1510915933:670001..670224 | TCONS_00005059-exon-sc0000050-1510915933:670001..670224 | Clytia hemisphaerica | exon |
| TCONS_00005059-exon-sc0000050-1510915933:669270..669552 | TCONS_00005059-exon-sc0000050-1510915933:669270..669552 | Clytia hemisphaerica | exon |
| TCONS_00005059-exon-sc0000050-1491911889:672507..672655 | TCONS_00005059-exon-sc0000050-1491911889:672507..672655 | Clytia hemisphaerica | exon |
| TCONS_00005059-exon-sc0000050-1491911889:670001..670224 | TCONS_00005059-exon-sc0000050-1491911889:670001..670224 | Clytia hemisphaerica | exon |
| TCONS_00005059-exon-sc0000050-1491911889:669270..669552 | TCONS_00005059-exon-sc0000050-1491911889:669270..669552 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:669270..672655 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001214 | SET_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00005059 vs. Swiss-Prot (Human)
Match: PRD12 (PR domain zinc finger protein 12 OS=Homo sapiens GN=PRDM12 PE=1 SV=2) HSP 1 Score: 154.451 bits (389), Expect = 2.421e-44 Identity = 80/187 (42.78%), Postives = 123/187 (65.78%), Query Frame = 2
Query: 80 ISMETIQNFLFGR----------KMKTWHDSMRSS--NDDLVQIEHMDLIDSLSATMPSQLRIDSSTIPGQTLGVFSSSWIKQGTKMGPFTGRLV-PKDEPFKRDSKYVWEVFDSNGQVSHFIDGEDELDRNWMCYIQCARSDQEQNLEVVQHPDSSIFYYALKDVPPNQELLVWYSSAVECFLGIP 601
I+ + + +FL+GR + K+ H S +++ + L Q ++ S +P+++ I S+IPG+ LG+FS +WIK GT+MGPFTGR++ P+ +++ +WEVF+ +G V +FID E R+WM YI+CAR++QEQNLEVVQ +SIFY A++ +PP+QELLVWY ++ FLGIP
Sbjct: 28 ITSDILHSFLYGRWRNVLGEQLFEDKSHHASPKTAFTAEVLAQSFSGEVQKLSSLVLPAEVIIAQSSIPGEGLGIFSKTWIKAGTEMGPFTGRVIAPEHVDICKNNNLMWEVFNEDGTVRYFIDASQEDHRSWMTYIKCARNEQEQNLEVVQ-IGTSIFYKAIEMIPPDQELLVWYGNSHNTFLGIP 213
The following BLAST results are available for this feature:
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