TCONS_00005055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005055
Unique NameTCONS_00005055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1995

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005055 ID=TCONS_00005055|Name=TCONS_00005055|organism=Clytia hemisphaerica|type=transcript|length=1995bp
GAAAACAATATGACGCTATTCTgccttttttaaatttggcctgtcattaa
aaagcattttgttttcattgaaatttttttttttaagttgataaaaaata
acaaatagaCCTCTCCGGAGTTGAGAGTTACTATGTGAAGATGCCAGACC
AAGATTATTATGATTTGCTTGGTGTATCAAAGAGTGTTAGTGATGCAGAA
CTAAAAAAAGCATATCGTAAACTTGCATTGAAATGGCATCCAGACAAAAA
TCCTGACAACAAGGAAGAAGCTGAACATCGATTCAAAGAAATCTCAGAAG
CCTACGATGTTCTTTCTGACAAGGACAAGAGATGTGTTTATGATTCTTAT
GGAAAGGAAGGCCTAAAAGGTGGTACGGGTCAAAGTCGTGGTGGAGCAGG
TCCTGGTTTTCAATCTTCACACTTTTTCCATGGTTTTGATGACCATGGAG
GCCATGGTGGCTTCAGGTTTCGATCAGCAGATGAAATTTTCAGaGAATTC
TTCGAGCATGATCCATTTGGAGATGATATTCTTTCCGACTTTTTTGGCCC
ATCAGTCAGACAACACCACAACCATCACCACCATCGAAGTAATGGTGGAG
GTCATCGTTCTTCAAATTCGTCATCAAGCCGTCGCATGGATCCGTTTGGT
GGGTTTGGTGGTTTTGGTGGATTTGGTGCAAGTCATTTTGGTGGTGGAGC
TGGTTTTCATGACGATCCATTTTTTAGTGGAGGAATGTCATCAAgctcat
tttcatcttcatcttttGGTGGTGGAAGGGGTGGAGGTTCTTTTAAATCT
ACGTCAACATCAACTCAAGTTATCAACGGAAGGTCTGTAACCACAAAGAA
AGTGGTTGAAAACGGTCAAGAAACCGTTGAAGTGTATGAGAACAATGTAT
TGCAATCGCGCAGTGTAAATGGGGTGCCACAATTAACCAATGGCGGAGGT
GGACATAGAAAGCGTCTAAAATAATTGTTGCTGTTGTATGATCTTGTCTT
GTATTATCAATGATTATGGAATAATGTTATGTGTTGTTATTCTGCTTGTC
CTGTGCAGATTTAACAAGGAAGTCTATTTGAGTTtttaagaaaagtaaaa
aaagttttttaacaaAGGTATTATTTAATTATATTTGTTGCATTACTCGT
GGAAAAGGAGATTGGCATAAACAGTGGTCCTTTGTATCCTATGGTGAAAT
AGGATTTACATCAGCCATTGCTTTCTTCCATCGCTATAAATTGTAAGATA
CACaaaattgttgttgttgtgataataataaaattgttgttaaatttatt
attgaaatttataattaataattttttatttctttgtcaCCATTTGTCAA
ATGCGCTACATTTTGATGATTAAAGCAGTAAATTTAAATATCattcaatt
ttctttccttCAAAATACAGTTATAGCAGTTTCTGAACGTTAGAATGTGA
TTGAATCTCTCaaagtttatcaaaataacaattactaaaaatttgaataa
agattaGGCCATTCCAGGAATAGTCTGTATctcctatgttgaggaggtgt
aatgtccagggtggtctgaaaaataaaaaatccagggtggcctggttttt
tgaatgataaaatccaaggtggtcagtataacgaggtcgaaaatccaggg
tggttcaaagaaatgagagaaaaaatccaatggggtcctgaaaaattgga
aaagaatccagggggtcaccttaaaaaaaaaagatctcctcaacataggg
gggtacaaattttttctggaatagcccagtTAATGCCATATAGGAATACC
ACAGAGTACTATCActgtaaataatatttttcttaagtATAAGGAACGTA
AGCTTCTTTCTTTATctattttatgatttatgaACCAATAAGTTTTCGTC
TTGTAAATATAATTTTATGTTACGAATCCGCATTtacattatttttaatt
tttattctcCCACTACTTTAAACAGTGTTACATCACAAGTATANN
Run BLAST on NCBI

protein sequence of TCONS_00005055-protein

>TCONS_00005055-protein ID=TCONS_00005055-protein|Name=TCONS_00005055-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
MPDQDYYDLLGVSKSVSDAELKKAYRKLALKWHPDKNPDNKEEAEHRFKE
ISEAYDVLSDKDKRCVYDSYGKEGLKGGTGQSRGGAGPGFQSSHFFHGFD
DHGGHGGFRFRSADEIFREFFEHDPFGDDILSDFFGPSVRQHHNHHHHRS
NGGGHRSSNSSSSRRMDPFGGFGGFGGFGASHFGGGAGFHDDPFFSGGMS
SSSFSSSSFGGGRGGGSFKSTSTSTQVINGRSVTTKKVVENGQETVEVYE
NNVLQSRSVNGVPQLTNGGGGHRKRLK
Run BLAST on NCBI

transcript from alignment at sc0000050:619413..626126-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005055 ID=TCONS_00005055|Name=TCONS_00005055|organism=Clytia hemisphaerica|type=transcript|length=6714bp|location=Sequence derived from alignment at sc0000050:619413..626126- (Clytia hemisphaerica)
GAAAACAATATGACGCTATTCTGCCTTTTTTAAATTTGGCCTGTCATTAA
AAAGCATTTTGTTTTCATTGAAATTTTTTTTTTTAAGTTGATAAAAAATA
ACAAATAGACCTCTCCGGAGTTGAGAGTTACTATGTGAAGATGCCAGACC
AAGATTATTATGATTTGCTTGGTGTATCAAAGAGTGTTAGTGATGCAGAA
CTAAAAAAAGCGTAAGTTTTAAATCTACTGTTTATTTTGATTTAAAAGAA
TTTTTTGTTTAAAAGGGAATTATTCTTATCAATAAAATTTTAGGCTTAAA
TATTTTTAAGTAAGCTAAGGACAATTTCCTAGATATTTTAGCAGTCCTAT
CCTATCCAGAGTTTCAACTCAATCGAAGAATGTTTTCAGGGACTTTTTTG
GGTGCATTACACATATGGCATATGCATTACTAGCAAATGGACAAAAGACT
GACATTACAAGCAACTTGTAAGGAAAAATGAGTCAAAAATTGACAATTTT
CAAAAGTTGAATTCAATGGAAATTATTGATATCCTCATAATTGAGGAATT
CTGAGCAAAACACTATACAGGGTGTCTACGGGACCTTGAAAACCTTGAAA
ACCTTGGAAATGAACCACCCAACCTTGAAAACCTTGAAAACTATCAATTT
TCTGGGAAAAACCTTGAAAACCTTGAAAAATCGTTAAAAACCTTGAAAAG
CACTATCCAGACATTCGAAAAGTAAGAATAAGTAAAAAACCGCCTGCGGC
GCTAAACCTTTATAACATTTAGAGAATTCCATATTTCCCTGTTTCTGTTG
TGATTCTGTCGCAATGAATGCAACATATTCTTTTATCATTAGCTGAGTTT
TTGTCACTAATTTCATGTTTGCATGAGGCCGTTCATCAATAAAATTTCGA
AGATTCCTTAAAATAACTCTTTTGGAAATTGATTTTTGTAAAAAACAAAA
TCAAAAACAAGGCGTTTTTTAGCCATTTGAAAGAGTCAAAATCAAAATTT
TCTCTCGTCGGCGCAAACCATGGTTGAGCCTCCTCGGTCACTGTAAACAA
TTGGTTTCGCTTCTATTTTTTTATTTCTACAGTTGGAAGACTAGGGAGCT
AGATTATTTCTCTTTGTAGTATTGTTCTCGAGAGGGAGATAGGAATTTAA
GGGCTCTGACCATAGTCCAAAAATTGATTTTGGTATTTGAGCATGNNCTT
TAAAAAGATGTTAATAATATGTTGCTTCACCCTCTTTTACAAAAAGTGCT
TAGTTTTAATGGGTAATTAACTTTTTTGTTTCAAAATTTCTGTACACTGT
CCGCAAAGAATTGAACTATTTTAAATTTTGCGGAAAGTTTTTCTAAAAAG
ATGTGTCAAAAGTTATGACTGTTTTTTTTAAGCAAAATCCAGATGAAAAA
TTGATGAAAAACCACTATTTTGAAGATGNACAAAGAAGCATTTACAAAAA
TTTTCCGCAAAAATTTTTATTGTTCGGTAAAAGATACACCATCTACTGCG
AAAAAATTTTCAAAATGTTTTTTCTTCGTCGGAACTAAGCTCTTCAAAGT
TGAAATACTCTTCCTCGCAAAAGTTTTCATTTTCTTCTTCATCAAATTTT
TTCAATGCAATTTTTGAATTTTCAGATTCAGAATAGTTTGTCTAACAGAA
AATGTATAACATGCCATTATTTTGTTGGTTACATCAGTCAGAAAACACAT
TTTAAACACGGCAATTATGAAAAATTCACTATGGTCAGAGCCCTTAACTG
TGGAAGTAATTCCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGAAAAGTGCCAAAGTTTTA
GCCAAAAAACCTTGAAAAACCACTTAAAAATGACCAAAAAAACCTTGAAA
ACCTTGAAAATCCCGAAAAAAAATCCGTAGACACTCTGCTATACTACAAC
TGGCATGGTTGTTATTGACATCTTTAGCCCCAACGACCCCAACCTGTTTT
GGGCTTTTTGGAGGGTGTAACCCCCCCCCAAAAAAAAAAAAACCTGCAGG
GGGGCTGACGCTATGTTTTGGGCCCATATTCCTTTTGTATTCCTGACTCT
ATTTAAACATAAACATAAACATATTTAAACATAGAAAGAAATGTTCTTTG
AACTTATTTTATTTACTTAATAATTACAATCTAGGAGTTACATCAAAGTC
TTTAAAATGCTGTTCTAAATTTTTCTAGATATCGTAAACTTGCATTGAAA
TGGCATCCAGACAAAAATCCTGACAACAAGGAAGAAGCTGAACATCGATT
CAAAGAAATCTCAGAAGCCTACGATGTTCTTTCTGACAGTTAGAAATTGA
TTCTTACTGTTTTTCTACGTTTTAAAAATCTTCTAAACAAACAATTTCTG
TGATAAAATTTGTAAAGATTGGCTTTACAATCAGATTTGTTTAACAAAGC
TAACAATTTTGTGTTTTATTTGCCAATTCAGGGGGTTCTGTCATGTGTTT
GAATTATTTTTACATGTGTCATTTCACACAAGCTTTTACACTGCCATCTA
ATAATGAAATTCTGTTTTTTGCATCTTTCAGAGGACAAGAGATGTGTTTA
TGATTCTTATGGAAAGGAAGGCCTAAAAGGTAAACATTCACAAAAAAAAT
TTAAATCCAATCCTTTCAAAATTATGTAGATTCAAAATAATCCTCCTCTA
CTATGAATATACTTGTTGGTAGTTTTGAGTTTTTTTGTAGTTGGCAGTTT
GTGATACTTCCTCTATTATGAGTAAACTCTTAGTAGGCAGCCTCGAACAT
GTTAACCTTATATTTTTGAGAGAGTCAAATTTTTTGAGAAAGTCATGACA
TATAGGATTAATTACACATTGTTAATACATCCCAGGTGGTACGGGTCAAA
GTCGTGGTGGAGCAGGTCCTGGTTTTCAATCTTCACACTTTTTCCATGGT
TTTGATGACCATGGAGGCCATGGTGGCTTCAGGTTTCGATCAGCAGATGA
AATTTTCAGGTATATTTTAAATCATTTCATTTATCAGATAAAATCCCTTT
CAATTTCAGAATTTCAATTGTCTGGAAATTTGAAGGTTTTCTTTTTTGAA
ATGACATCTGGACGTTTTTTTTTTCAAATTCATATCAATATTATAGTGTT
TTTTTAATTCACAGTATTTTTTCTTAAGAATACGAGATGCAGGGATTTCA
TATAAAGTTATTAATTGTTAAGACGGTGTTTCCTCAAAAAGCAAGTATCC
TTTGTGTTAACTTTCTTCTCTTCTAAAATCTCCAATACATTTAACCACCG
TAAAGCCAAAAGGAAATGTTTCCGGAAATGTGGGTGACAAAAGAAAACTC
ACCTGGCAAGCCACAACATTTTTATTTACAATTTGAGATTTTTCTTACAC
TCTTTATTCTGCTTTTTAAGCAGAAATACTTATAACTTAAATGTGTGTGT
TCTGCTTAGTTCGTTGACTTTTTTTGTAAGAATAGATTGTTTTTATAGCT
CCAAAGCTCCACTTTAATGATACTGTGTAAAATATCACATCTTAATACAC
ATTTTTTAATGAACAACCTGGAACAACATGTTTCTGAGGCTTGAGCCAAT
TTTTATTTTACTATTATGTGATATGATTAAAAAAAGTTTTTGTAGCCGAG
TGACTCTCAAAAAAAGTTCATCCGGGTCTATTTCATTCTTTTATTTGTCA
TAATTAAAAAATTTTCATTTTTGTAGAGAATTCTTCGAGCATGATCCATT
TGGAGATGATATTCTTTCCGACTTTTTTGGTAAGCTTAGTAATTCAAAAT
CACAATTCATCTCTTTTAAAATTGTTGGTTATTATAACACGTTTTTTTCT
TTCATAAGTCTATCAATAATGTCAGTAAATTGCGGTGACGTAGAGCCAAA
TTGACACTATGTCTATAAGAATACAGGTACACAGGAATACCAGGTTGGGA
TTTTTCAAATTGACAAGAATAAGGGGTGAGAATAATAAAAGATAGGAATA
ATTCTGACTGAAGATACATTTATAAAGGTATGTTTTCTACTCTAGATACA
CAGACATAATAATAATGGTGAAAATAAGATCAAGATATACATAAGTCATT
CTAAAAATAACCGTTCGAAAAAAGTTTCTCCTTAAATATTTTTCAGCGCA
AATATTATATGAAAAATAAAAATATGCAAAGAAAATCTCAACCTTAGTTT
GAGCAATTTCTTAAGAGTCAATTACCCTCAGGCAAAAAAAACAACAACAC
TATTCTCATAAAAATGGTGTTATTATTGAGCTTTCTTTTGAAATATAAGT
TCAGCCATGCAGGGTGCCAAATTGCTTTTGTTTTTCAACCATAGGCCCAT
CAGTCAGACAACACCACAACCATCACCACCATCGAAGTAATGGTGGAGGT
CATCGTTCTTCAAATTCGTCATCAAGCCGTCGCATGGATCCGTTTGGTGG
GTTTGGTGGTTTTGGTGGATTTGGTGCAAGTCATTTTGGTGGTGGAGCTG
GTTTTCATGACGATCCATTTTTTAGTGGAGGGTAACCTTTCTAATTTGGA
AAAAGTTCCTACTTTTTTTTGCAAAATTCCTTTTGCCTTGCCCTCATATC
AATCACCTTAAAATATCTACAAGTTTGATTAAAATTAAGGTAGTTGGTTT
CTCTATTTTTGAATTGATTTAAATTTGTGTTCTGATAAATTTTTCATAAA
AACTTTTTTTTTGAGAGGGACAAGTCATTCAGACACTTTATTTGAATCTC
TGCGATTCCACTGGGAAAAGAATGAAAGATTTAAACTGGTGACATTGTTG
TACACCAAACTCACATAATGAGGTCTTATTTTTTAACAGATATTAACTTT
TAAATATTTCCATTGTTATGTTTTTAGAATGTCATCAAGCTCATTTTCAT
CTTCATCTTTTGGTGGTGGAAGGGGTGGAGGTAATCCTTACATTAATTCA
AATTAATATACCCCCTGCCACAGTTTAAAATTACTTAAACTGAAAAGAAA
GTTTTGCTTTCAAAGTTGAAGCCTGGAACTTTTTAAGAGTACCGTAACTT
GGTCTAACATCCCTCATCTAATCCCGACACCCTTCTTTAGGACTGGGAAT
AATAGAAAGGTTAGAATCACCGGTGTCTAATTAGCGATCAAAGAGGAAAG
AATATTTTTTTCAATCAGTGATTCCGACCTTATTTGTTTATCATATCCAA
AAGAAGGGAATTAGTTGAGTGATGTCGACCTCATACCAACTTGCAGTACC
AATTAAGTTTGATAATACACAAAAAGATCTGGATTATGATTTCATTTGAA
ATACTGAGTAAAAAAAGCAATTAATGAAAACTGTCACACCTTCAATTTCA
TTTAGGTTCTTTTAAATCTACGTCAACATCAACTCAAGTTATCAACGGAA
GGTCTGTAACCACAAAGAAAGTGGTTGAAAACGGTCAAGAAACCGTTGAA
GTGTATGAGAACAATGTATTGCAATCGCGCAGTGTAAATGGGGTGCCACA
ATTAACCAATGGCGGAGGTGGACATAGAAAGCGTCTAAAATAATTGTTGC
TGTTGTATGATCTTGTCTTGTATTATCAATGATTATGGAATAATGTTATG
TGTTGTTATTCTGCTTGTCCTGTGCAGATTTAACAAGGAAGTCTATTTGA
GTTTTTAAGAAAAGTAAAAAAAGTTTTTTAACAAAGGTATTATTTAATTA
TATTTGTTGCATTACTCGTGGAAAAGGAGATTGGCATAAACAGTGGTCCT
TTGTATCCTATGGTGAAATAGGATTTACATCAGCCATTGCTTTCTTCCAT
CGCTATAAATTGTAAGATACACAAAATTGTTGTTGTTGTGATAATAATAA
AATTGTTGTTAAATTTATTATTGAAATTTATAATTAATAATTTTTTATTT
CTTTGTCACCATTTGTCAAATGCGCTACATTTTGATGATTAAAGCAGTAA
ATTTAAATATCATTCAATTTTCTTTCCTTCAAAATACAGTTATAGCAGTT
TCTGAACGTTAGAATGTGATTGAATCTCTCAAAGTTTATCAAAATAACAA
TTACTAAAAATTTGAATAAAGATTAGGCCATTCCAGGAATAGTCTGTATC
TCCTATGTTGAGGAGGTGTAATGTCCAGGGTGGTCTGAAAAATAAAAAAT
CCAGGGTGGCCTGGTTTTTTGAATGATAAAATCCAAGGTGGTCAGTATAA
CGAGGTCGAAAATCCAGGGTGGTTCAAAGAAATGAGAGAAAAAATCCAAT
GGGGTCCTGAAAAATTGGAAAAGAATCCAGGGGGTCACCTTAAAAAAAAA
AGATCTCCTCAACATAGGGGGGTACAAATTTTTTCTGGAATAGCCCAGTT
AATGCCATATAGGAATACCACAGAGTACTATCACTGTAAATAATATTTTT
CTTAAGTATAAGGAACGTAAGCTTCTTTCTTTATCTATTTTATGATTTAT
GAACCAATAAGTTTTCGTCTTGTAAATATAATTTTATGTTACGAATCCGC
ATTTACATTATTTTTAATTTTTATTCTCCCACTACTTTAAACAGTGTTAC
ATCACAAGTATANN

Coding sequence (CDS) from alignment at sc0000050:619413..626126-

>TCONS_00005055 ID=TCONS_00005055|Name=TCONS_00005055|organism=Clytia hemisphaerica|type=CDS|length=6672bp|location=Sequence derived from alignment at sc0000050:619413..626126- (Clytia hemisphaerica)
GTTCTTTTAAATCTACGTCAACATCAACTCAAGTTATCAACGGAAGGTCT
GTAACCACAAAGAAAGTGGTTGAAAACGGTCAAGAAACCGTTGAAGTGTA
TGAGAACAATGTATTGCAATCGCGCAGTGTAAATGGGGTGCCACAATTAA
CCAATGGCGGAGGTGGACATAGAAAGCGTCTAAAATAAAATGTCATCAAG
CTCATTTTCATCTTCATCTTTTGGTGGTGGAAGGGGTGGAGGCCCATCAG
TCAGACAACACCACAACCATCACCACCATCGAAGTAATGGTGGAGGTCAT
CGTTCTTCAAATTCGTCATCAAGCCGTCGCATGGATCCGTTTGGTGGGTT
TGGTGGTTTTGGTGGATTTGGTGCAAGTCATTTTGGTGGTGGAGCTGGTT
TTCATGACGATCCATTTTTTAGTGGAGGAGAATTCTTCGAGCATGATCCA
TTTGGAGATGATATTCTTTCCGACTTTTTTGGTGGTACGGGTCAAAGTCG
TGGTGGAGCAGGTCCTGGTTTTCAATCTTCACACTTTTTCCATGGTTTTG
ATGACCATGGAGGCCATGGTGGCTTCAGGTTTCGATCAGCAGATGAAATT
TTCAGAGGACAAGAGATGTGTTTATGATTCTTATGGAAAGGAAGGCCTAA
AAGATATCGTAAACTTGCATTGAAATGGCATCCAGACAAAAATCCTGACA
ACAAGGAAGAAGCTGAACATCGATTCAAAGAAATCTCAGAAGCCTACGAT
GTTCTTTCTGACAATGCCAGACCAAGATTATTATGATTTGCTTGGTGTAT
CAAAGAGTGTTAGTGATGCAGAACTAAAAAAAGCGTTCTTTTAAATCTAC
GTCAACATCAACTCAAGTTATCAACGGAAGGTCTGTAACCACAAAGAAAG
TGGTTGAAAACGGTCAAGAAACCGTTGAAGTGTATGAGAACAATGTATTG
CAATCGCGCAGTGTAAATGGGGTGCCACAATTAACCAATGGCGGAGGTGG
ACATAGAAAGCGTCTAAAATAAAATGTCATCAAGCTCATTTTCATCTTCA
TCTTTTGGTGGTGGAAGGGGTGGAGGCCCATCAGTCAGACAACACCACAA
CCATCACCACCATCGAAGTAATGGTGGAGGTCATCGTTCTTCAAATTCGT
CATCAAGCCGTCGCATGGATCCGTTTGGTGGGTTTGGTGGTTTTGGTGGA
TTTGGTGCAAGTCATTTTGGTGGTGGAGCTGGTTTTCATGACGATCCATT
TTTTAGTGGAGGAGAATTCTTCGAGCATGATCCATTTGGAGATGATATTC
TTTCCGACTTTTTTGGTGGTACGGGTCAAAGTCGTGGTGGAGCAGGTCCT
GGTTTTCAATCTTCACACTTTTTCCATGGTTTTGATGACCATGGAGGCCA
TGGTGGCTTCAGGTTTCGATCAGCAGATGAAATTTTCAGAGGACAAGAGA
TGTGTTTATGATTCTTATGGAAAGGAAGGCCTAAAAGATATCGTAAACTT
GCATTGAAATGGCATCCAGACAAAAATCCTGACAACAAGGAAGAAGCTGA
ACATCGATTCAAAGAAATCTCAGAAGCCTACGATGTTCTTTCTGACAATG
CCAGACCAAGATTATTATGATTTGCTTGGTGTATCAAAGAGTGTTAGTGA
TGCAGAACTAAAAAAAGCGTTCTTTTAAATCTACGTCAACATCAACTCAA
GTTATCAACGGAAGGTCTGTAACCACAAAGAAAGTGGTTGAAAACGGTCA
AGAAACCGTTGAAGTGTATGAGAACAATGTATTGCAATCGCGCAGTGTAA
ATGGGGTGCCACAATTAACCAATGGCGGAGGTGGACATAGAAAGCGTCTA
AAATAAAATGTCATCAAGCTCATTTTCATCTTCATCTTTTGGTGGTGGAA
GGGGTGGAGGCCCATCAGTCAGACAACACCACAACCATCACCACCATCGA
AGTAATGGTGGAGGTCATCGTTCTTCAAATTCGTCATCAAGCCGTCGCAT
GGATCCGTTTGGTGGGTTTGGTGGTTTTGGTGGATTTGGTGCAAGTCATT
TTGGTGGTGGAGCTGGTTTTCATGACGATCCATTTTTTAGTGGAGGAGAA
TTCTTCGAGCATGATCCATTTGGAGATGATATTCTTTCCGACTTTTTTGG
TGGTACGGGTCAAAGTCGTGGTGGAGCAGGTCCTGGTTTTCAATCTTCAC
ACTTTTTCCATGGTTTTGATGACCATGGAGGCCATGGTGGCTTCAGGTTT
CGATCAGCAGATGAAATTTTCAGAGGACAAGAGATGTGTTTATGATTCTT
ATGGAAAGGAAGGCCTAAAAGATATCGTAAACTTGCATTGAAATGGCATC
CAGACAAAAATCCTGACAACAAGGAAGAAGCTGAACATCGATTCAAAGAA
ATCTCAGAAGCCTACGATGTTCTTTCTGACAATGCCAGACCAAGATTATT
ATGATTTGCTTGGTGTATCAAAGAGTGTTAGTGATGCAGAACTAAAAAAA
GCGTTCTTTTAAATCTACGTCAACATCAACTCAAGTTATCAACGGAAGGT
CTGTAACCACAAAGAAAGTGGTTGAAAACGGTCAAGAAACCGTTGAAGTG
TATGAGAACAATGTATTGCAATCGCGCAGTGTAAATGGGGTGCCACAATT
AACCAATGGCGGAGGTGGACATAGAAAGCGTCTAAAATAAAATGTCATCA
AGCTCATTTTCATCTTCATCTTTTGGTGGTGGAAGGGGTGGAGGCCCATC
AGTCAGACAACACCACAACCATCACCACCATCGAAGTAATGGTGGAGGTC
ATCGTTCTTCAAATTCGTCATCAAGCCGTCGCATGGATCCGTTTGGTGGG
TTTGGTGGTTTTGGTGGATTTGGTGCAAGTCATTTTGGTGGTGGAGCTGG
TTTTCATGACGATCCATTTTTTAGTGGAGGAGAATTCTTCGAGCATGATC
CATTTGGAGATGATATTCTTTCCGACTTTTTTGGTGGTACGGGTCAAAGT
CGTGGTGGAGCAGGTCCTGGTTTTCAATCTTCACACTTTTTCCATGGTTT
TGATGACCATGGAGGCCATGGTGGCTTCAGGTTTCGATCAGCAGATGAAA
TTTTCAGAGGACAAGAGATGTGTTTATGATTCTTATGGAAAGGAAGGCCT
AAAAGATATCGTAAACTTGCATTGAAATGGCATCCAGACAAAAATCCTGA
CAACAAGGAAGAAGCTGAACATCGATTCAAAGAAATCTCAGAAGCCTACG
ATGTTCTTTCTGACAATGCCAGACCAAGATTATTATGATTTGCTTGGTGT
ATCAAAGAGTGTTAGTGATGCAGAACTAAAAAAAGCGTTCTTTTAAATCT
ACGTCAACATCAACTCAAGTTATCAACGGAAGGTCTGTAACCACAAAGAA
AGTGGTTGAAAACGGTCAAGAAACCGTTGAAGTGTATGAGAACAATGTAT
TGCAATCGCGCAGTGTAAATGGGGTGCCACAATTAACCAATGGCGGAGGT
GGACATAGAAAGCGTCTAAAATAAAATGTCATCAAGCTCATTTTCATCTT
CATCTTTTGGTGGTGGAAGGGGTGGAGGCCCATCAGTCAGACAACACCAC
AACCATCACCACCATCGAAGTAATGGTGGAGGTCATCGTTCTTCAAATTC
GTCATCAAGCCGTCGCATGGATCCGTTTGGTGGGTTTGGTGGTTTTGGTG
GATTTGGTGCAAGTCATTTTGGTGGTGGAGCTGGTTTTCATGACGATCCA
TTTTTTAGTGGAGGAGAATTCTTCGAGCATGATCCATTTGGAGATGATAT
TCTTTCCGACTTTTTTGGTGGTACGGGTCAAAGTCGTGGTGGAGCAGGTC
CTGGTTTTCAATCTTCACACTTTTTCCATGGTTTTGATGACCATGGAGGC
CATGGTGGCTTCAGGTTTCGATCAGCAGATGAAATTTTCAGAGGACAAGA
GATGTGTTTATGATTCTTATGGAAAGGAAGGCCTAAAAGATATCGTAAAC
TTGCATTGAAATGGCATCCAGACAAAAATCCTGACAACAAGGAAGAAGCT
GAACATCGATTCAAAGAAATCTCAGAAGCCTACGATGTTCTTTCTGACAA
TGCCAGACCAAGATTATTATGATTTGCTTGGTGTATCAAAGAGTGTTAGT
GATGCAGAACTAAAAAAAGCGTTCTTTTAAATCTACGTCAACATCAACTC
AAGTTATCAACGGAAGGTCTGTAACCACAAAGAAAGTGGTTGAAAACGGT
CAAGAAACCGTTGAAGTGTATGAGAACAATGTATTGCAATCGCGCAGTGT
AAATGGGGTGCCACAATTAACCAATGGCGGAGGTGGACATAGAAAGCGTC
TAAAATAAAATGTCATCAAGCTCATTTTCATCTTCATCTTTTGGTGGTGG
AAGGGGTGGAGGCCCATCAGTCAGACAACACCACAACCATCACCACCATC
GAAGTAATGGTGGAGGTCATCGTTCTTCAAATTCGTCATCAAGCCGTCGC
ATGGATCCGTTTGGTGGGTTTGGTGGTTTTGGTGGATTTGGTGCAAGTCA
TTTTGGTGGTGGAGCTGGTTTTCATGACGATCCATTTTTTAGTGGAGGAG
AATTCTTCGAGCATGATCCATTTGGAGATGATATTCTTTCCGACTTTTTT
GGTGGTACGGGTCAAAGTCGTGGTGGAGCAGGTCCTGGTTTTCAATCTTC
ACACTTTTTCCATGGTTTTGATGACCATGGAGGCCATGGTGGCTTCAGGT
TTCGATCAGCAGATGAAATTTTCAGAGGACAAGAGATGTGTTTATGATTC
TTATGGAAAGGAAGGCCTAAAAGATATCGTAAACTTGCATTGAAATGGCA
TCCAGACAAAAATCCTGACAACAAGGAAGAAGCTGAACATCGATTCAAAG
AAATCTCAGAAGCCTACGATGTTCTTTCTGACAATGCCAGACCAAGATTA
TTATGATTTGCTTGGTGTATCAAAGAGTGTTAGTGATGCAGAACTAAAAA
AAGCGTTCTTTTAAATCTACGTCAACATCAACTCAAGTTATCAACGGAAG
GTCTGTAACCACAAAGAAAGTGGTTGAAAACGGTCAAGAAACCGTTGAAG
TGTATGAGAACAATGTATTGCAATCGCGCAGTGTAAATGGGGTGCCACAA
TTAACCAATGGCGGAGGTGGACATAGAAAGCGTCTAAAATAAAATGTCAT
CAAGCTCATTTTCATCTTCATCTTTTGGTGGTGGAAGGGGTGGAGGCCCA
TCAGTCAGACAACACCACAACCATCACCACCATCGAAGTAATGGTGGAGG
TCATCGTTCTTCAAATTCGTCATCAAGCCGTCGCATGGATCCGTTTGGTG
GGTTTGGTGGTTTTGGTGGATTTGGTGCAAGTCATTTTGGTGGTGGAGCT
GGTTTTCATGACGATCCATTTTTTAGTGGAGGAGAATTCTTCGAGCATGA
TCCATTTGGAGATGATATTCTTTCCGACTTTTTTGGTGGTACGGGTCAAA
GTCGTGGTGGAGCAGGTCCTGGTTTTCAATCTTCACACTTTTTCCATGGT
TTTGATGACCATGGAGGCCATGGTGGCTTCAGGTTTCGATCAGCAGATGA
AATTTTCAGAGGACAAGAGATGTGTTTATGATTCTTATGGAAAGGAAGGC
CTAAAAGATATCGTAAACTTGCATTGAAATGGCATCCAGACAAAAATCCT
GACAACAAGGAAGAAGCTGAACATCGATTCAAAGAAATCTCAGAAGCCTA
CGATGTTCTTTCTGACAATGCCAGACCAAGATTATTATGATTTGCTTGGT
GTATCAAAGAGTGTTAGTGATGCAGAACTAAAAAAAGCGTTCTTTTAAAT
CTACGTCAACATCAACTCAAGTTATCAACGGAAGGTCTGTAACCACAAAG
AAAGTGGTTGAAAACGGTCAAGAAACCGTTGAAGTGTATGAGAACAATGT
ATTGCAATCGCGCAGTGTAAATGGGGTGCCACAATTAACCAATGGCGGAG
GTGGACATAGAAAGCGTCTAAAATAAAATGTCATCAAGCTCATTTTCATC
TTCATCTTTTGGTGGTGGAAGGGGTGGAGGCCCATCAGTCAGACAACACC
ACAACCATCACCACCATCGAAGTAATGGTGGAGGTCATCGTTCTTCAAAT
TCGTCATCAAGCCGTCGCATGGATCCGTTTGGTGGGTTTGGTGGTTTTGG
TGGATTTGGTGCAAGTCATTTTGGTGGTGGAGCTGGTTTTCATGACGATC
CATTTTTTAGTGGAGGAGAATTCTTCGAGCATGATCCATTTGGAGATGAT
ATTCTTTCCGACTTTTTTGGTGGTACGGGTCAAAGTCGTGGTGGAGCAGG
TCCTGGTTTTCAATCTTCACACTTTTTCCATGGTTTTGATGACCATGGAG
GCCATGGTGGCTTCAGGTTTCGATCAGCAGATGAAATTTTCAGAGGACAA
GAGATGTGTTTATGATTCTTATGGAAAGGAAGGCCTAAAAGATATCGTAA
ACTTGCATTGAAATGGCATCCAGACAAAAATCCTGACAACAAGGAAGAAG
CTGAACATCGATTCAAAGAAATCTCAGAAGCCTACGATGTTCTTTCTGAC
AATGCCAGACCAAGATTATTATGATTTGCTTGGTGTATCAAAGAGTGTTA
GTGATGCAGAACTAAAAAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002863XLOC_002863Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005055-exon-sc0000050-1575043694:625916..626126TCONS_00005055-exon-sc0000050-1575043694:625916..626126Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1575043694:623639..623748TCONS_00005055-exon-sc0000050-1575043694:623639..623748Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1575043694:623348..623395TCONS_00005055-exon-sc0000050-1575043694:623348..623395Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1575043694:622968..623091TCONS_00005055-exon-sc0000050-1575043694:622968..623091Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1575043694:622198..622250TCONS_00005055-exon-sc0000050-1575043694:622198..622250Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1575043694:621446..621632TCONS_00005055-exon-sc0000050-1575043694:621446..621632Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1575043694:621047..621099TCONS_00005055-exon-sc0000050-1575043694:621047..621099Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1575043694:619413..620621TCONS_00005055-exon-sc0000050-1575043694:619413..620621Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1510915933:625916..626126TCONS_00005055-exon-sc0000050-1510915933:625916..626126Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1510915933:623639..623748TCONS_00005055-exon-sc0000050-1510915933:623639..623748Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1510915933:623348..623395TCONS_00005055-exon-sc0000050-1510915933:623348..623395Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1510915933:622968..623091TCONS_00005055-exon-sc0000050-1510915933:622968..623091Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1510915933:622198..622250TCONS_00005055-exon-sc0000050-1510915933:622198..622250Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1510915933:621446..621632TCONS_00005055-exon-sc0000050-1510915933:621446..621632Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1510915933:621047..621099TCONS_00005055-exon-sc0000050-1510915933:621047..621099Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1510915933:619413..620621TCONS_00005055-exon-sc0000050-1510915933:619413..620621Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1491911889:625916..626126TCONS_00005055-exon-sc0000050-1491911889:625916..626126Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1491911889:623639..623748TCONS_00005055-exon-sc0000050-1491911889:623639..623748Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1491911889:623348..623395TCONS_00005055-exon-sc0000050-1491911889:623348..623395Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1491911889:622968..623091TCONS_00005055-exon-sc0000050-1491911889:622968..623091Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1491911889:622198..622250TCONS_00005055-exon-sc0000050-1491911889:622198..622250Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1491911889:621446..621632TCONS_00005055-exon-sc0000050-1491911889:621446..621632Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1491911889:621047..621099TCONS_00005055-exon-sc0000050-1491911889:621047..621099Clytia hemisphaericaexon
TCONS_00005055-exon-sc0000050-1491911889:619413..620621TCONS_00005055-exon-sc0000050-1491911889:619413..620621Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005055-proteinTCONS_00005055-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:619413..626126 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.2084	21.1336	36.6386	41.2091	46.71	36.1424	46.0063	49.0351	42.0564	38.6293	32.2766	34.4327	31.033	30.109	27.1356	27.6262	34.8126	37.2362	38.7272	47.1715	38.7132	41.1079	28.5741	31.7616	60.3354	59.5202	26.5189	25.4059	20.5266	16.6676
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001623DnaJ_domain
IPR018253DnaJ_domain_CS
Blast
[Close]
BLAST of TCONS_00005055 vs. Swiss-Prot (Human)
Match: DNJB2 (DnaJ homolog subfamily B member 2 OS=Homo sapiens GN=DNAJB2 PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 7.888e-31
Identity = 73/137 (53.28%), Postives = 90/137 (65.69%), Query Frame = 3 
Query:  156 YYDLLGVSKSVSDAELKKAYRKLALKWHPDKNPDNKEEAEHRFKEISEAYDVLSDKDKRCVYDSYGKEGLKG-GTGQSR---GGAGPGFQSSXXXXXXXXXXXXXXXXXXSADEIFREFF-EHDPFGDDILSDFFGP 551
            YY++L V +S S  ++KKAYR+ AL+WHPDKNPDNKE AE +FKE++EAY+VLSDK KR +YD YG+EGL G GTG SR   G  GPGF  +                FRS +E+FREFF   DPF +  L D  GP
Sbjct:    4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTGTGTGPSRAEAGSGGPGFTFT----------------FRSPEEVFREFFGSGDPFAE--LFDDLGP 122
The following BLAST results are available for this feature:
BLAST of TCONS_00005055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNJB27.888e-3153.28DnaJ homolog subfamily B member 2 OS=Homo sapiens ... [more]
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