|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005053 ID=TCONS_00005053|Name=TCONS_00005053|organism=Clytia hemisphaerica|type=transcript|length=1812bpRun BLAST on NCBI protein sequence of TCONS_00005053-protein >TCONS_00005053-protein ID=TCONS_00005053-protein|Name=TCONS_00005053-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp MAAMRRVCLVGSGNWGSAIAKIIGNNVMKSKLFEKTVNMYVYEEMVDGQKRun BLAST on NCBI transcript from alignment at sc0000050:586895..617222- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005053 ID=TCONS_00005053|Name=TCONS_00005053|organism=Clytia hemisphaerica|type=transcript|length=30328bp|location=Sequence derived from alignment at sc0000050:586895..617222- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000050:586895..617222- >TCONS_00005053 ID=TCONS_00005053|Name=TCONS_00005053|organism=Clytia hemisphaerica|type=CDS|length=10410bp|location=Sequence derived from alignment at sc0000050:586895..617222- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005053 vs. Swiss-Prot (Human)
Match: GPDA (Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic OS=Homo sapiens GN=GPD1 PE=1 SV=4) HSP 1 Score: 430.639 bits (1106), Expect = 3.751e-146 Identity = 205/344 (59.59%), Postives = 265/344 (77.03%), Query Frame = 2
Query: 74 AMRRVCLVGSGNWGSAIAKIIGNNVMKSKLFEKTVNMYVYEEMVDGQKLTDIINKRHENVKYLPGVQLPSNVVAIPSLVDACKDANVLVFVIPHQFVDRICNQLKGNLAPDAVGVSLIKGLSQSSVGIENMSDIIGQQLDINCSALMGANIAHEVADEQFCESTIGCTEETLWPMWKELFHCSYFKINCVRDVHTVELCGALKNAVAVGAGIIDALEFGDNTKAAVIRLGLIEMRLFAKHFFSG-VEETTFFESCGLADLITTCYGGRNRKVAEAFVRTGKSLEELEAEMLNGQKLQGPHTAFQVYQLLKEKNIEKQFPLFTSVYRICYENEDPSHLIDTLRDH 1102
A ++VC+VGSGNWGSAIAKI+G N + F+ V M+V+EE + G+KLT+IIN +HENVKYLPG +LP NVVA+P +V A +DA++L+FV+PHQF+ +IC+QLKG+L +A G+SLIKG+ + G++ +S++IG++L I S LMGANIA EVADE+FCE+TIGC + + KEL F+I V++V TVE+CGALKN VAVGAG D L FGDNTKAAVIRLGL+EM FAK F SG V TF ESCG+ADLITTCYGGRNRKVAEAF RTGKS+E+LE E+LNGQKLQGP TA ++Y +L+ K + +FPLF +VY++CYE + I L++H
Sbjct: 2 ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNH 345 The following BLAST results are available for this feature:
BLAST of TCONS_00005053 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.