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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005051 ID=TCONS_00005051|Name=TCONS_00005051|organism=Clytia hemisphaerica|type=transcript|length=1288bp
tttcaatgttatttttaaATTGATATCTTTTTCTAAATCCTTTGTATATC
CCGAATATTATTTACAAGTACTCTGATATTTACAGTCCATAATATAATAC
CTAAACTACATAAACATTACCTACAAATATaaattttctctttgtttttt
ttgttgttgtaactttttctgaaaataattTAGTTTTTTATAACGCGTCT
TTGTAATGTTGTCGAAAaattgtctctttttattggaAAGTATCAACAAG
TGATGCTAAGATTGCTCTTTCACAAGCAGTTAACGAGTTTTGTCGTTCAA
TATAACTCGGTTGTGGGGAGTAACTCGGTTGTGGGGAGTAACTCTGTTGT
GGTGAGTTACTCGATCTAGGTGAGAAGTCTTCTTCGGCAAAATAATCAGT
GAAGTTAGAAGCTGAATACCCGTTTGGAACCTTTTGGTCATTTGATGACG
AGTTGAATGCAGTTGGTTGGTAATTCGCGTTTAATGTTGGTAGATTGAAA
ACAGCATTTTGGTGGTGGTTATAAAAACGGTTTTGTATGTTGGCATTTGT
AGTCTGTGTATTGAAAGACGAGTTTgaattgtaaagagagtttgtTGATT
GTTGTTGTGTATATGAATTCTGTTCTGCGTGCTGACATTGTGTGACACAG
ATTTCAAgttcttttttgatttggtcAATTTTGACTTGTTCATAGTCTTT
GCTGTCATTGGTATAAGCAGAAGTGTTGTTGTTGATCCTGATGGTGTTGT
TTGTGAGGAGGTTTCCATCAGAAGCTGTTGTGATAGTTGGTGGATTCATA
ATATCAATTGCTGTTGAGATATTGGCATAATCTTCTTCAGAGATGATGGA
TTGTGTGGAGGAATCTGTAGACGACATTGCTGGTGAAACCGGTGAAGGAT
TTGTTGATCTGCCAGCTCTGTTAGTTGATCTGATCACTGATCGCGTTTTG
GGCGAATCGATAAATTTATAGGTGAATCGTTTACGTTCGACTTTCTCTAA
GACGTCTTTACCGTAATAATATCGCATAGCTCTGGCGAATTTAGCCCAAG
TCATTGTATTCTTGCCCTTACGTTGGCCCCATTCTTGAGCTAATCCTTCA
GTGTCTTCGATTTTGAATTCCAGTTTTTCTCGATCAGTCCATCGGACGCA
AGGTGTATGCTGGTCTTCCAGTAGGTTGAAGATGAAACTCCACAATGAGA
GACGGTTGAAACATGGATATTCGTCTTCtataatgaaaattaaaaaaatt
aagtttagaAATTTTGCAATACGAAAAATGTAAGAGCG Run BLAST on NCBI transcript from alignment at sc0000050:538042..539460- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005051 ID=TCONS_00005051|Name=TCONS_00005051|organism=Clytia hemisphaerica|type=transcript|length=1419bp|location=Sequence derived from alignment at sc0000050:538042..539460- (Clytia hemisphaerica)
TTTCAATGTTATTTTTAAATTGATATCTTTTTCTAAATCCTTTGTATATC
CCGAATATTATTTACAAGTACTCTGATATTTACAGTCCATAATATAATAC
CTAAACTACATAAACATTACCTACAAATATAAATTTTCTCTTTGTTTTTT
TTGTTGTTGTAACTTTTTCTGAAAATAATTTAGTTTTTTATAACGCGTCT
TTGTAATGTTGTCGAAAAATTGTCTCTTTTTATTGGAAAGTATCAACAAG
TGATGCTAAGATTGCTCTTTCACAAGCAGTTAACGAGTTTTGTCGTTCAA
TATAACTCGGTTGTGGGGAGTAACTCGGTTGTGGGGAGTAACTCTGTTGT
GGTGAGTTACTCGATCTAGGTGAGAAGTCTTCTTCGGCAAAATAATCAGT
GAAGTTAGAAGCTGAATACCCGTTTGGAACCTTTTGGTCATTTGATGACG
AGTTGAATGCAGTTGGTTGGTAATTCGCGTTTAATGTTGGTAGATTGAAA
ACAGCATTTTGGTGGTGGTTATAAAAACGGTTTTGTATGTTGGCATTTGT
AGTCTGTGTATTGAAAGACGAGTTTGAATTGTAAAGAGAGTTTGTTGATT
GTTGTTGTGTATATGAATTCTGTTCTGCGTGCTGACATTGTGTGACACAG
ATTTCAAGTTCTTTTTTGATTTGGTCAATTTTGACTTGTTCATAGTCTTT
GCTGTCATTGGTATAAGCAGAAGTGTTGTTGTTGATCCTGATGGTGTTGT
TTGTGAGGAGGTTTCCATCAGAAGCTGTTGTGATAGTTGGTGGATTCATA
ATATCAATTGCTGTTGAGATATTGGCATAATCTTCTTCAGAGATGATGGA
TTGTGTGGAGGAATCTGTAGACGACATTGCTGGTGAAACCGGTGAAGGAT
TTGTTGATCTGCCAGCTCTGTTAGTTGATCTGATCACTGATCGCGTTTTG
GGCGAATCGATAAATTTATAGGTGAATCGTTTACGTTCGACTTTCTCTAA
GACGTCTTTACCGTAATAATATCGCATAGCTCTGGCGAATTTAGCCCAAG
TCATTGTATTCTTGCCCTTACGTTGGCCCCATTCTTGAGCTAATCCTTCA
GTGTCTTCGATTTTGAATTCCAGTTTTTCTCGATCAGTCCATCGGACGCA
AGGTGTATGCTGGTCTTCCAGTAGGTTGAAGATGAAACTCCACAATGAGA
GACGGTTGAAACATGGATATTCGTCTTCTATAATGAAAATTAAAAAAATT
AAGTTTAGAAATTTTGCAATACGAAAAATGTAAGAGCGAATGCAACAATG
CACGTTTTCCTCAATGCTTTTATATTGAAAAATAAGNTGAAACATGGATA
TTCGTCTTCTATAATGAAAATTAAAAAAATTAAGTTTAGAAATTTTGCAA
TACGAAAAATGTAAGAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005051-exon-sc0000050-1575043694:538249..539460 | TCONS_00005051-exon-sc0000050-1575043694:538249..539460 | Clytia hemisphaerica | exon |
| TCONS_00005051-exon-sc0000050-1575043694:538042..538117 | TCONS_00005051-exon-sc0000050-1575043694:538042..538117 | Clytia hemisphaerica | exon |
| TCONS_00005051-exon-sc0000050-1510915933:538249..539460 | TCONS_00005051-exon-sc0000050-1510915933:538249..539460 | Clytia hemisphaerica | exon |
| TCONS_00005051-exon-sc0000050-1510915933:538042..538117 | TCONS_00005051-exon-sc0000050-1510915933:538042..538117 | Clytia hemisphaerica | exon |
| TCONS_00005051-exon-sc0000050-1491911889:538249..539460 | TCONS_00005051-exon-sc0000050-1491911889:538249..539460 | Clytia hemisphaerica | exon |
| TCONS_00005051-exon-sc0000050-1491911889:538042..538117 | TCONS_00005051-exon-sc0000050-1491911889:538042..538117 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:538042..539460 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
BLAST of TCONS_00005051 vs. Swiss-Prot (Human)
Match: ELF2 (ETS-related transcription factor Elf-2 OS=Homo sapiens GN=ELF2 PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 1.940e-18 Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = -1
Query: 932 LWSFIFNLLEDQHTPC---VRWTDREKLEFKIEDTEGLAQEWGQRKGKNTMTWAKFARAMRYYYGKDVLEKVERKRFTYKFIDSPKTRSVI 1195
LW F+ +LL+D++T C ++WT REK FK+ D++ +++ WG+ K K M + RA+RYYY + +L KVE +R Y+F D PK VI
Sbjct: 210 LWEFLLDLLQDKNT-CPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKDMPKNIVVI 299
The following BLAST results are available for this feature:
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