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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005045 ID=TCONS_00005045|Name=TCONS_00005045|organism=Clytia hemisphaerica|type=transcript|length=1002bp
ATTTTACGCCACCGTTTGCAAACGGTGATCTATGATCTACTGATTACATT
CCATTGTAAAGCTATCATCGAGGTGCGCTTTTGGGAATTGGAATTCTAAA
TTCAAACATTGAATTTGTACATGAACTGGAGAGGGCGAGAATAATATTTG
ATGAACTTGTGAGAGAAAGTCATTCTTTGGATAAAGATGCAGTGTTCACA
AGTTTTAGTAATTTCCATTGCAGCTTCCTTCATATTCCATGGGATTCAAT
CGAGACCTCTTACAGATAGAGAAATTGTAAAGGTGTTGAATGATGTACTT
CAAGATTACTCCAGAACGTTGACAGCACAAGACCATTCGAATGACGGATT
TGCCAATTTGGCCGACCCTGGAGTTGCAGTACGTGGCCCAGATGATCCAC
TCGAATTCTTTGTCATTAAAAAGGATGGAACATCATCAAACACAGATAAT
CGATTAACTAAAATCACATCGACACGTCCGACATTATCAACCAATGTTGC
CTCTTCTACATCGACCGATACAGTAACGACTTCTCGACCAAAGACATCTC
GAGCTACGATCTCTCGACCAACGACATCTCAACCGACGACATCTCAGCCA
ACAACCTCTCAACCAACGACTTCTCAAACAACGACTTCTCGACCAACCAC
ATCTCGACCAACGACATCAACTGACATCACAATTACAAAAGAAACAACCG
CCCCTAAGACGCGCCCAACCACCCCAAACAAGGCACCCATTGGACAAAAG
TTTCGCCAAATTACCATGAATTGTGGACCTGGTGACAAAGAAGGACAATA
TGTCTCCGGTGAAGCCAATAGTGTTGTTGTTAATATTAATGTTTATAAAA
AGTGAATATTTAGTTTCTTACTCGTGTATAGAATTTTGTTTGTTAATTTT
CCTGAAGAATAAGAATCATTTAAAACTTTGCAGTTCTTTTATCTCCGTTC
GTTTAATTTGTATGTATTTTTTCGGAATTAAAgtaatgaaatttattttt
ca Run BLAST on NCBI transcript from alignment at sc0000050:461557..463428- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005045 ID=TCONS_00005045|Name=TCONS_00005045|organism=Clytia hemisphaerica|type=transcript|length=1872bp|location=Sequence derived from alignment at sc0000050:461557..463428- (Clytia hemisphaerica)
ATTTTACGCCACCGTTTGCAAACGGTGATCTATGATCTACTGATTACATT
CCATTGTAAAGCTATCATCGAGGTGCGCTTTTGGGAATTGGAATTCTAAA
TTCAAACATTGAATTTGTACATGAACTGGAGAGGGCGAGAATAATATTTG
ATGAACTTGTGAGAGAAAGTCATTCTTTGGATAAAGATGCAGTGTTCACA
AGTTTTAGTAATTTCCATTGCAGCTTCCTTCATATTCCATGGGATTCAAT
CGAGACCTCTTACAGATAGAGAAATTGGTAAGATAAACTTACTTATTTGT
GTTCTATTTTATTTTAGAATTACATAAATCGAAGTGGGCTTCGTGATTCT
TTGAGTTCTCAATTTTGAAGTTTAGAATATTTTTTTCAGAGACTCTTAAA
TTTCAAAAGAAAATAAGGTATGGCAAAGCCTGATTTTTGCAGTACAGATA
AAAAAGCGGAAAACTAAAAAATTAAATCTGAAGTAAAAAGTTAACAAAAT
ATTTTAGCCTCAGAATATTTTTGATATAATTCTTTAAATATTGAGCCTTT
TAAAGTAATTTTATATTTTATTTCATTTGGTTGTGTGTTGTCAGTCTTTA
GAAAATTGCTACCTCTGTCTCGACTAGCCGGTATGAACTTTGAGGGGTAG
AATGCATGTCTTGTATTAGGACTAGGGAAAAAACATTTTTTACTTTCTTG
GTGATGGTACCCACCAGATTTCTACGACACAATGTCAGAATTATAAAAAC
TAATCCATTCTCCAACAGCAAAATATTTTCAAGAATTGGACCCAAATTAT
ATAAAAATCGATAATATTTGATGTGGGATAATATCATTCAAAGTTTCAAA
AACGTCAGCATCTTTCTATCTTTTGTTCAATTTTGAATTTTTCGGAGAGT
TGACCGTAAGTATAATCCCTCCGGAACACAGAGACTTCATCATATTTAAT
ATTTTAAGATTCTTATGGTTTTCCTTTTACAGTAAAGGTGTTGAATGATG
TACTTCAAGATTACTCCAGAACGTTGACAGCACAAGACCATTCGAATGAC
GGATTTGCCAATTTGGCCGACCCTGGAGTTGCAGTACGTGGCCCAGATGA
TCCACTCGAATTCTTTGTCATTAAAAAGGATGGAACATCATCAAACACAG
ATAATCGATTAACTAAAATCACATCGACACGTCCGACATTATCAACCAAT
GTTGCCTCTTCTACATCGACCGATACAGTAACGACTTCTCGACCAAAGAC
ATCTCGAGCTACGATATCTCAATCTACGATATCTCGATCGACAACATCTC
GACCAACGACATCTCGACCAACGACATCTCGACCAACGACCTCTCGACCA
ACGACCTCTCGACCAACGACCTCTCGACCAACGACCTCTCGACCAACGAC
ATCTCAACCGACGACATCTCAGCCAACAACCTCTCAACCAACGACATCTC
AGCCAACAACATCTCAGCCAACAACATCTCGACCGACGACTTCTCAAACA
ACGACTTCTCGACCAACCACATCTCGACCAACGACATCAACTGACATCAC
AATTACAAAAGAAACAACCGCCCCTAAGACGCGCCCAACCACCCCAAACA
AGGCACCCATTGGACAAAAGTTTCGCCAAATTACCATGAATTGTGGACCT
GGTGACAAAGAAGGACAATATGTCTCCGGTGAAGCCAATAGTGTTGTTGT
TAATATTAATGTTTATAAAAAGTGAATATTTAGTTTCTTACTCGTGTATA
GAATTTTGTTTGTTAATTTTCCTGAAGAATAAGAATCATTTAAAACTTTG
CAGTTCTTTTATCTCCGTTCGTTTAATTTGTATGTATTTTTTCGGAATTA
AAGTAATGAAATTTATTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005045-exon-sc0000050-1575043694:463152..463428 | TCONS_00005045-exon-sc0000050-1575043694:463152..463428 | Clytia hemisphaerica | exon |
| TCONS_00005045-exon-sc0000050-1575043694:462164..462446 | TCONS_00005045-exon-sc0000050-1575043694:462164..462446 | Clytia hemisphaerica | exon |
| TCONS_00005045-exon-sc0000050-1575043694:461984..462043 | TCONS_00005045-exon-sc0000050-1575043694:461984..462043 | Clytia hemisphaerica | exon |
| TCONS_00005045-exon-sc0000050-1575043694:461557..461938 | TCONS_00005045-exon-sc0000050-1575043694:461557..461938 | Clytia hemisphaerica | exon |
| TCONS_00005045-exon-sc0000050-1510915933:463152..463428 | TCONS_00005045-exon-sc0000050-1510915933:463152..463428 | Clytia hemisphaerica | exon |
| TCONS_00005045-exon-sc0000050-1510915933:462164..462446 | TCONS_00005045-exon-sc0000050-1510915933:462164..462446 | Clytia hemisphaerica | exon |
| TCONS_00005045-exon-sc0000050-1510915933:461984..462043 | TCONS_00005045-exon-sc0000050-1510915933:461984..462043 | Clytia hemisphaerica | exon |
| TCONS_00005045-exon-sc0000050-1510915933:461557..461938 | TCONS_00005045-exon-sc0000050-1510915933:461557..461938 | Clytia hemisphaerica | exon |
| TCONS_00005045-exon-sc0000050-1491911889:463152..463428 | TCONS_00005045-exon-sc0000050-1491911889:463152..463428 | Clytia hemisphaerica | exon |
| TCONS_00005045-exon-sc0000050-1491911889:462164..462446 | TCONS_00005045-exon-sc0000050-1491911889:462164..462446 | Clytia hemisphaerica | exon |
| TCONS_00005045-exon-sc0000050-1491911889:461984..462043 | TCONS_00005045-exon-sc0000050-1491911889:461984..462043 | Clytia hemisphaerica | exon |
| TCONS_00005045-exon-sc0000050-1491911889:461557..461938 | TCONS_00005045-exon-sc0000050-1491911889:461557..461938 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:461557..463428 - |
Blast
The following BLAST results are available for this feature:
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