TCONS_00005042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005042
Unique NameTCONS_00005042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2127

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005042 ID=TCONS_00005042|Name=TCONS_00005042|organism=Clytia hemisphaerica|type=transcript|length=2127bp
GTTTATTTCTTGAACTCTATATTTTTTAGCTGCTAACATTTAtcttattt
tcaggaaaaaaaaagttaaaaggaatataaaaatGGAAGCTATATCAAGC
ATAATATGGAATGATGATTTCTGGCTTCCAGAAGGATTCACATGGAAAGA
TCTTGAAATGACTCCCGGTGGTATACGCCATCCACAATTCTCAGATCTTT
ATTACGTACCAATCATCGCACTGGTTTTATTACTCATTAGAATCATCTTT
GAAAGATTTATTGCCCTCCCGTTCTGTGTATATCTTGGCATCACAAACAC
GACCTCTAAATATGAGCAAAATGCAATTTGTGAGAAAGTTTTCAAAGAAG
TGACAGCAAACCCAAAGAAAGAACACATTGATGGATTAATCAAACAACTT
GGGTGGAGTCAAGGAAGGGTACAAAGATGGTTTCGCAAAAGGAGAAAGGC
CAACCAATTACCGTTATTGAAGAAAGCCACTGAGAGTTGTTGGAGATGTG
TTTTTTacttttggttgttttgttttggAGGGTACACCATCTTGCCAACT
GATTGGTTTTATGATACACGTCAATGGATGATTGGTTATATTAGAGAACA
AGATTTTAACAACTATATGAGATCATATTATTTGATGGAGCTCGGGTTCT
ACTTCTCACTATTGTTTTCTCAATTCATCGATGCTAAAAGAAAGGACTTT
TGGCAAATGTTTATTCACCATATTGTAACAATCGCTCTGATTTTCTCATC
CTTTGCTATTTCCCATTGTCGTATTGGGGTGGTCATTATGTTCATTCACG
ATGCCTCTGATTTCTGGCTGGAGGGTGCCAAAGTATTCAACTATGCCAAA
ATACAGAAAGTGTGTGATGGGCTTTTCGTCATGTTTGCCCTAACTTTCTT
TATAACTAGATGGGTGTACTATCCATTTTGGGTGCTTGAAGCATTTATTT
TTAAAGTCCCCGAGTTAATTGGGCCATGGAAAGGACATTGGCTTGAATGT
ACGTGgctcataattttgcaaATCCTACATTTTTACTGGGGAGGCTTGAT
TGTTCACATGGTTTACAAGTTGTTAACGCAAGGAAAAGTTGACCGGGACA
CACGCAGTGAAGATGAAAGTTCTGGCGATGAAACACCGACACAACCAACT
ACTTCCGCTGCTgtcaacaaaaagaaaaagtaaatgaAAGAGATGAAGAC
CTCATCTTTCATCATGGGAATACACTTGTAGATACAAGTATTATCTATCA
ACCAACGTAGATTAAAGTCCCATGTCTGTGCTACATTCGATTTTGCGCCC
ATCAATTGGCATCGCCATGACTTAAATGCACTTGTaggattttttaatga
aattgagCAGGTTTTACAAGATCTGTTTTCCTTAGAACAACAATGATTAA
AACTATTTGCTTTAGATTTTTTGGATGAAGCAATTTTTAACTTCTAACAA
AGTTtcctattttcttttttctcgttTTGAGTTCAAAATAATACCCTCGT
TGCCTCAGCTCCAGGGTGACCAATGGTAAAGAATTTTCTCCTGGGTGTAA
TTTATATATCAACTGCTTCTTTTATGTATATTGTTGTTacaaatagtttt
ttttcatttattactCCAATTCAgtaattttcctctttttttaattttgt
ttttaattcgCTTATGATGTATTCTTCAACCCTTTTAAATCCCACCCTCG
TCATTAagaattttagcttgaaacgAAATAACCTTATGAGAAAATCTCTT
GTTATAACTCTTGTACTATCGACTTTGTTGGACCATTTTTCGCATTTAGT
Ttgatataagattttttaattatgaagtagagtctctttaacttaaacct
ctgtaactcgaatgtctccttaactcgaacaagatttctgatttcttcag
ttaacaatacatTATAAACCGTTCTCcatatttcgaaattttcttaattt
gaacaaatttatgtgcgtgttcgatttatggagactccactgtataacaA
TTTTATAGATAGGAAGCCTTCCTGGcgatttcaattttctttagatttat
ttttcgttgtttttttagtttgaaaaaagCCTAACATTTTACTAAAGGCA
TTGGTTGTGCCTTTCTTCATAGCAANN
Run BLAST on NCBI

transcript from alignment at sc0000050:352367..365198-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005042 ID=TCONS_00005042|Name=TCONS_00005042|organism=Clytia hemisphaerica|type=transcript|length=12832bp|location=Sequence derived from alignment at sc0000050:352367..365198- (Clytia hemisphaerica)
GTTTATTTCTTGAACTCTATATTTTTTAGCTGCTAACATTTATCTTATTT
TCAGGAAAAAAAAAGTTAAAAGGAATATAAAAATGGAAGCTATATCAAGC
ATAATATGGAATGATGATTTCTGGCTTCCAGAAGGATTCACATGGAAAGA
TCTTGAAATGACTCCCGGTGGTATACGCCATCCACAATTCTCAGATCTTT
ATTACGTACCAATCATCGCACTGGTTTTATTACTCATTAGAATCATCTTT
GAAAGGTATTTCCAATCAAGTTACTGATTTTAACAATCATAATAATGTCA
ACAAAATGGCTGCAAATTATTTGCTTAATATTTTTCTATTCTGTATTCAT
TAGAATAATCTTTGAAAGGTATTTCCAATCAAGTTACTGATTTTAACAAT
CATAATAATGTCAACAAAATGGCTGCAAATTATTTGCTCAATATTTTTTT
ATTGACACTTCATTCACAAAAACGAAACAGCTTGANAAAGTTAAGAATAT
CCATGATATAATGGATTTACACCATTCTTATTAAAAAAAAGCGTGTATAT
CTGTCTAAATTCATATGTAGGGCATTTCATTGAGCTTCATCAGGCCAGAG
TTGAATTCAATCAATTTTATCTTTATAGTAGAACTTATACTTATTAGAGT
TTAAAAAGCATAATTGTTTTTTAGATTTATTGCCCTCCCGTTCTGTGTAT
ATCTTGGCATCACAAACACGACCTCTAAATATGAGCAAAATGCAATTTGT
GAGAAAGTTTTCAAAGAAGTGACAGCAAACCCAAAGAAAGAACACATTGA
TGGATTAATCAAACAACTTGGGTGGAGTCAAGGAAGGGTACAAAGATGGT
TTCGCAAAAGGAGAAAGGCCAACCAATTACCGTTATTGAAGAAAGCCACT
GAGAGTTGTTGGAGATGTGTTTTTTACTTTTGGTTGTTTTGTTTTGGAGG
GTACACCATCTTGCCAACTGATTGGTTTTATGATACACGTCAATGGATGA
TTGGTTATATTAGAGAAGTAAATTTCACTTTCAGAAAATAAGGCTTTATA
ATATGTAAGATGATCCATATCATGGAAGCCAAGTTGGAGATTAGGAATGG
GCAACTCTAGAAAAAATAAAAGTATTAAAAATCTTATAAATCTACTGTGT
CCAAGAGACAAAAGGAAATGTTGAGGGTAATCATTGAACAGAAACCAGCA
ATAATATATATCCTTCACAATGGTTTCTCACAGTAGAGTTTACAGTGTAA
TTATCCTCGAAACTTAAGACATCTGATGGACCACTTCGGTCATCTGGTTT
GAGAGCTTCTTTGGTTTACCTTTTGACATTGATATAAGACACTTTTCTAT
CAGGCAACCACTCCATTGTTTGTCACAGCTCATCAGCAGGTGTGAGGACT
TTTTCTGAAAAAGCCCAATGCTCTTTTCTTATGTTTATTTTTCAATTTTA
AATGCTATTTCACTTTACAGCAAGATTTTAACAACTATATGAGATCATAT
TATTTGATGGAGCTCGGGTTCTACTTCTCACTATTGTTTTCTCAATTCAT
CGATGCTAAAAGAAAGGTTAGTACTATTATAAATTAATCTACTTAATGTT
CTCCTTAAAAATAATGGCAAACTGATTTCACTTGATTTCAAAAACAGGCG
TTCATTTCATTTGTCAAAATGCCATGTCAGTCATCATAAAATCAAACACG
CTTTTTTAAGAACTGTACTATGCTGAGGGTGAGCATTATTCTAATTTTTT
ATTGTTCTAAACAATATGGCTATTCTAACTCTCTGAAATCTCACCCTGAT
ATTCTTATAGAAGTTATTCTTATAAAAAAAGCGTGTATCTACTGCCTTCT
AAAAGGTTTTGGAACAACTTAACAATAGCTTGCCTTTTTATGATAACTCT
TTTTCAGGACTTTTGGCAAATGTTTATTCACCATATTGTAACAATCGCTC
TGATTTTCTCATCCTTTGCTATTTCCCATTGTCGTATTGGGGTGGTCATT
ATGTTCATTCACGATGCCTCTGATTTCTGGCTGGAGGTATTATTATATTT
TTATTGCATACTGTACATACATGTTTCTATGTGACTTTATCAAATAAAAC
AATCACCACGCTTATTAACCTGAAAGCCACTAGAGATTGGGATTAAGTTT
ACTTTGCGATCGAATGAGATGACATTAGATGTTTGTTTTTATTGCTTCAA
TTCAAAGATATTACACTCCACTCGAACCCATTCCCCTTTCAGTCAGCCTT
TTTGACGCAAGGGTTACTAAGTCTACGGCTAATACATCTCAGCTTAAGGT
TAAAACGTACTCGCCTGACTGGAAGGTTGCAGCTTGATAGCCCTACACTA
GAATTACAACGATGTAAAAGGTCACCTTTTCATGACTCGTCGCCCTACGT
AGCTTACTACACAGGTTATGGTAAGATTGATTGCATATGAGCTTGAACCC
TGGCAGACCCTAAGCATTCCATAAAAAGCACAAACTATTATCATATATGC
GATGTGAGCCCCCTTTCTGACATTTCCTTCTATTTCTTCAGGGTGCCAAA
GTATTCAACTATGCCAAAATACAGAAAGTGTGTGATGGGCTTTTCGTCAT
GTTTGCCCTAACTTTCTTTATAACTAGATGGGTGTACTATCCATTTTGGT
AAGTCTATTGCAATTTTTCTGTTTCAATGTTTTCCTTCTTTGCATGCATA
TATACCATTCACACGTTGTTATGCGTAACTCTACTTACTACTTGTAATAA
ATCTGTATACTGCAAACTAACTAGTATCTCCTACAAAGCATGCACTAATT
TATTTTTATTACAACTTAGTTTGTTTAAATCAATTGTCAGAAACTTTAAT
AGGCCATATCTATGAGTCCAGATGAGTCTTCTCTATAATTTCTGACATGC
CTACTAACTTTTATAAACTTATTTTGAAGCGATTCTCAGTTAGTTTTAAT
GTTAGTGTAGAAAACCTTTAGAAAACCTTTAGAAATATTTTTTTGCGTCT
AACCTTTAATCAAATTCCTTGCTTTTAATGCATTTTCCTTTTAAAACTCG
CAATTCCATTTTATACTAAACACTTTTATGTGTTTATAGATACACGTTTT
TTTATAAGAACATCCAACATTTTTGAAGCCTTCGGATGTTCTTAACTTTT
TGAGTTTTAAGCCTAAATATGTTTATAACATGTTTTTATTTTCACCATTT
TATGAGTATTTTTGACCATTTTCCTAAGAAACCGGGTGTTTTAGAGCCCA
CAAAGCCTTAAAATGTTCTTAACTTGTTCTTAGCATTTTGTTCATCGAAG
CCTTATGTTCTTATATAGTTTGTTCTTATAAAAAAAACGTGTACGGAGTT
TCAGAGGGAGAGATGTTTTTAGTTTAAAAATTTGCAATTTTTTTTATTTG
TAGCACAGCACTAACACTTTAAACTACTGTATATCACATTAACAGTATAA
TACCTACTTACTACTCTTCGAGGCCCGATAACTCCACCACCTACTAACAA
TGTTTTTCATGCACGCACAATATTTTTTCTGAACGTTGGCTCTTCTTTAT
TACCCTGTCTTCAATGTTGACTTCAATTTTGAATGCAAACGGTATATCGG
ACATCATTAGAAGCGAGACCAATTTAATTTGTTGTTCTACCAGCCCGACC
GACCCTATTTTTGCTAAAATCAAAAAAATAATAATATCGAATTTCAACTA
CAATGTATTTTACACACTAGTTATTTGTAAGAATTAAACTTGAATAAAGC
TTAAAATTAATTCAAGAAATTGAAAAATCATAAAAGCATTCCATACACTA
AAATTTTATTATGATCATCATCATAAAAAAAAATAAAAAACAAAGTGAAT
TTTTGATCCAGATACTTTTTGGAAATTTTTCTCGGTACTCCAACCCTGAT
AAATGAAAAGTTTATTCTTATTTTGTCGACCGACCGACCCATATTTATCT
AACGATCTGTCCGTAGAACAACAAATTAAATTGGTCTCGCCTTATCTGTT
TTAATTTATGTGTTGTGTTTATTTTTGTGTATTTGACAGAATCACTACAT
ACTGTTTAACTGACTTTAACCTTGCACGGCACGAACATGACACTTTGCCC
ATATACTTTTTCCCAGTACAGCACGTACCTTTGCCCATTTCCACGATATT
TTAATGAAATCAAAGTCCAAATTCTATCAATTTTAGGGTGCTTGAAGCAT
TTATTTTTAAAGTCCCCGAGTTAATTGGGCCATGGAAAGGACATTGGCTT
GAATGTACGTGGCTCATAATTTTGCAAGTAAGTTATAGACTGACCCCTGA
AAATACAATCTCACTCGACAATACCCATGCTGATGTGCCCACAATTCCAC
CAAACCTTCCCACCATGCACCGTTAAAGCACTTTAAACATATCATAAAAT
TAAAATTTAAAACTATACAGTAACAAAATCATGAAATGAAACTCAAAGCA
AAGAGTATTGTCACAAAGATGACGAAATTGAAAGTATGAATGACTTCGCC
TGCAAGCAAACAGTAAGAATGCTGAATATGCATTTTTCTTTATTGTTTTT
CAAAGGGGGATTGTAGAAGGTTAGACGTAGAAAAAAATTTTAGATAGTTT
TATAGTCTTAGATATTATAGTATTAGTGATACCAAGTAAAGAAAAGCTCA
TCCCTCTCAAGTGCCAAACAAGCAGGGAGTCCAAGATTTTACCCCAAAAT
TTTTTATTTTCAAACGAGAGGTTATAACACAACCCTTTGTGCAGCGCTAA
CATCTTTTTTAAGAAAACTTTTTTGCTTGAAAAAAATCTCATTGTAAAAG
TTCATTAAAGCATTTCAAAAAAGTTAAATATCGATGCATCAATGAATAGG
ATTGAAAATATCTCTTTGACTAATACCTGTCAAACCCTGCATCGAAAAAT
GTATTAAAGGTGATTGTTAAACCTTCTTACAGGACATTGTATCGATTAAC
ACACAACGTGAAACATAGTGATACTTCTTCTCCCCCTGCCTCAGGAGGAG
GACTCATTGTTATTGTGGTGGGCTGATTCATTTTCTTATTCAAAATAAGT
GTAGGTTGCGAAATATTTCTCATATCAAGAAGTGTTCTGACCAAACTTAG
GGGATTTCGATAGTCAGTTAGAGCCCTTTTAGCGAACTTTAATCCAACCA
CTAACCACCCAATCAGGTTTGACAGGAAGAAATCATAACACTATTGATAT
CATTTAAAACGAGATTGGCCTTTCTAAAACCTTATTTCTAAGATTTATTT
CAAAAAGTGGCAAACTTGGATTAGATGAAAACGAGAAATTTCCAACCAGC
GGGAGGGAAGCACTTTAATAACTGGGCACTTGAGTAGAAAGATGATGTAA
GCNTTAAAGTCCCCGAGTTAATTGGGCCATGGAAAGGACATTGGCTTGAA
TGTACGTGGCTCATAATTTTGCAAGTAAGTTATAGACTGACCCCTGAAAA
TACAATCTCACTCGACAATACCCATGCTGATGTGCCCACAATTCCACCAA
ACCTTCCCACCATGCACCGTTAAAGCACTTTAAACATATCATAAAATTAA
AATTTANATTTCAAAAAAGTTAAATATCGATGCATCAATGAATAGGATTG
AAAATATCTCTTTGACTAATACCTGTCAAACCCTGCATCTAAAAATGCAT
TAAAGGTGATTGTTAAACCTTCTTACATGACATTGTATCGATTAACACAC
AACGTGAAACATAGTGATACTTCTTCTCCCCCCTGCCTCCCCCTTTAAAA
AAGAGGAGGACTCATTGTTATTGTGGTGGGCTGATTCATTTTCTTATTCA
AAGTAAGTGTAGGTTGCGAAATATTTCTTATATCAAGAAGTGTTCTGACC
AAACTTAGGGGATTTCGATAGTGAGTTAGAGCCCTTTTAGCGAACTTGAA
TCCAACCACTAACCACCCAATCAGGTTTGATAAGAAGAAATCATAACACT
ATTGATATCATTTAAAACGAGATTGGCCTTTCTAAAACCTTATTTCTAAG
ATTTATTTCAAATAGTGGCAAACGTGGATTAGATGAAAACGAGAAATTTC
CAACCAGCGGGAGGGAAGCACTTTAATAACTGGGCACTTGAGTAGAAAGA
TGATGCAAGTAACAAAACTGCGGAATCGCTTCAAAGTATAGTTAGTACAA
ATAGTAGAGTGTTGGGCAGTGAAACATCAATATTTTTTTGTCTTTCTTTC
TCTCGCAGGGTTTTAGACTGTATGATTTTTATTTCCTGGAATACCATTGG
TGCTTATATGTCCTACTATTATTTCTCTACTTTGTTAATTGTTTTGCAGG
TAAGCCCTTATAATATGTGATATTTTTTGGGGGAAAGAGGCATAGTTTAA
ATGGAAACACCATTACAAATTTGTTTTTTTAATTTAGCGCCACAGGCGAA
ATTTTTGTTCGAGGAGTGAAAATTTCAATTTTTACCTATATTTTGAGGGG
AACCGCCTTACGTAGCAATACCCCCTTTAAAATGTTACGTACATGATTTG
CTGCGTCCATTATTCGATTTATTTTTCGATTGTTTTTCATGAATATTATA
CGGACTCATAACATATATTAATCGAGTGTATTTAACGGATGATAAAGTAA
TAAATTTTAAGTAGAAATCAGGCGGCGTTTAAAGTTGAATTCTATTTAGG
AGGAATAGGTTAAAAAAATAACTATCCATGCTCAATCTGGCATAATCTTT
ACATGGTGATATTATTTTCGACATTAAAAAGTAAGAGACTTGCTTGCTGA
TTATAAACAACCAACTTGTTATAAAAATCCTACCCATGGGACAAAGAATA
AGCCAAGATAATAGCCCAATTATAATCCGACTTGCTTACTCCTATTTCCC
TTTTTGATTTAGCCTTTAACGACAGAAATTTTGTCCGTAAAAACAACAAA
CTAATTTAACTCCTTAATTGTGTCCTCCTTAATTTGTGTCAAATACCATT
GTTAAAAACCATAATTTCCATGCTGAAAGATAATTTACTTTGTCCAGTGT
TTTATGAAGGTCAGTGTTTAATAAAGCTGCCAAGAAACTTAAAAATGAGT
TAATTTTAACCCATCTTAAAATTACGGTGAAATCTTCATAACTAATATGC
TCCTTTTACAAATTAAACCCTCTTTAACAAATTGCCTGCTCCCTTCTGTA
AACAAACAAACTCAAACTAAGTTAATTTCCAAGACTTGAAAGCTCCAAAA
ATCAAGTTAAGGGGGCTACCGCACTATTAAAAGGTTTGAACTTTCCAGAA
ATGTCTTGGTTAGTTTCATGTTTTACGAAAGTTAAGAATCGGCTTAATTA
TTGTTTAAAACTTAAGCGTAAAATAAATATGTGTAAATGAATATCTTGTA
ATATAAAATACTTTAAACATATTCTGTAAATTTTAATCTCTGGTGATCCC
ACCCACTTTCGATGCCTCATAAATCAATGGTTACTTTGGGTATTGCCGAC
AGTGAATTGTCACTTTTAGAGGGGATTGGCCACATATTAGTATCTTAAAA
ACAAGCTTAACGATTATTTTTTAGTTCAGATTGCCATAAATTTTGAAAAA
GAAATATCGATTAAAGTCTAATATAAAATTGTTTCAAGAATTTTCAAAAA
TGAAGAAGAAAAAATTAACTTTTTTTACTTTGATGCTTAAAACTTCATTA
TTGGTGTATAAAGGTTTCAGCTATATGATTCTTTCGGTGACAGGAACATT
GCCCCCGGTTGCAAGTGATCTATGGTAAACAATTATTATATAGAAAAAAT
TAGGAGTTTTTATCACCAAAAGGTATTTTTTGTTCTTCATTTTTCATCTT
CATTTACAAAAATTTATTAAAAAATTATTTTTCTCAAAAGTTATAGTGCT
CTTAAATATTTTTAACGGTATACAATATATGTTTCAATATGAGAAACAAA
ACCAGAATTAGTATACATTTAAAGCTCGTGAACTTTAGTCGATGTTTTTT
TGGCATTTCTTATTAAAAGTTAGCAAGCACCTCACTTAAAACCGGTATTT
TTCATCTCGTTTCTGAGTGAGTTCCACTTTGACGATTTTTTAAAAATAGA
AGCCTTTCAAATGTTGTATAGCAAATTCGATTTTTCGCTACTGCAAGGGC
TTCAAAAGTTAAAAGTGACGTCGAAAAATCGAATGTTTGGAGCCTGAACC
ACTGACCTTTATATAACCATGGACCATCTTTGATTGGAGTTTTTTTAGAA
TTGGTACCCAAGGAGAAGCCATTGCAATGTTAAAAATTAACGTCTAACGC
CGCTACATCATCAAAAGAATTTGTGGAAAAGTAGACCTAGCGCTCTAGAT
GCATTTACACCCCTATCGAGTAGTGCCGACATTAGGGTACCAATTTTCAA
AAAACTCCGATCAAAGATTTTGCTTGGCTGGGATTGAGAAGCTTTGTCCA
GGGTATATAANNNNNNNNNNNNNNNNNNNCACCGCTATCGAGTAGTGCCG
ACATTAGGGTACCAATTTTCAAAAAACTCCGATCAAAGATTTTGCTTGGC
TGGGATTGAGAAGCTTTGTCCAGGGTTTATAAAGGTCAGTGGCCTGAACA
CATTCGAAGAAGTCGCATAGACGTTAGCCTGTCAGACGAAAACCGCTTTT
TTATCGCGATTTAACGTCTGTTACTTTTTGCCGTGGAATCGAATGTTCTT
GGACGGGAAAGTCCGTCCAAGATTTTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACAAGTTGCACTC
CATCGCATGTGCCTTTTTCTGATTTTCAAGAAGTCATTGCATTGCTTCGA
GCGGTAAAGTTCAAATAGATTTTCGAACTTTCGAATTTCGTGATTCGAAT
GTTGAAAATTGTTTGAGTGATTTTTTTTGTTTTGAAAAAGTGAATGGCTC
TTTCTTGAAAAGAAACAAAAATCTGCGGAAGGATGAGAAAGAAGATGGAA
ATTTTATCATTGCATCAACAGCAGCAGAGTCGTTGGGTTATTCCCATAAA
AGTTTAATCTCTCGGCTTCTACAATCCTGTTATGGTGAATGAAAATTATC
AAATCATTTCTTTGGTTTGGATCCTAGCCATAATAGTGCTGCTGATATAC
GAACTTGGTATGGACTTTTTGTATGTTTTGAGATGGCAACGAATATCTTT
TGGATATGACTTGAAACCTAGAAGAATCTATCCCTCGCTTATTCCAGTGG
AAAGAAGAACTGTTTGTTTGTTATTGTTTTTATTGGCGGTTCGACGTGGT
TTGTGATCGCTTGTTTGAAAATGTGACATANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACAAGCATTTTT
AGCTCACCAAAACTTTACCCCGATCCCGAGGATTCTTTTGTTTTGATTTT
ATGCACGGAACTCTAAAATTAAGACTAGATTTGACGTCGACGCGCAACCT
CTCCAGNTTTTGTTTTGATTTAATGCACGGAACTCTAAAATTAAGACTAG
ATTTGACATCGACGCGCAACCTCTCAACCAAGAAATTCTATTCGGTCGTC
CATTCCAGTCTTTGCTTTCGAGTTCCGTGTTTTCCCCGCCTTTATGCACT
CCACACGGAATCGACGTCACCCTCCACCACAGTGCGATAACTTTCGACAA
ACGCTTCAAAGTGTAACTGACCATAAAACAGAGAAAAAATTTGGTTTGTG
GGAAGGTACTGGCTACATAGACGTTAGTTGCGTAGAAAAAACGCAGGTGA
CGTCTAGTATAGGCTAACTAAAAGTAGGTGTCATATATTTTTCTTTGCGA
GAATCAAATGGTGTCAAATATCTTGTCGCTCCAATGTTATGAGTTCAAAT
ATATGTCACTGACATTTATATGTCCCTGGACCAAGCTATATCCGCCATCT
TTGACGGAACTTTTTTTGAAAGTTGGTACCCGCAAAGAAGCAATTTTAGT
GTTTGAAACTTTGCCTAACGACAAACAGCGCTACATCATTAGTGTACAAG
CAAAACTAGATCTAGTGCTCTTTCCGCAGGTACCAATTTCAAAAAATCTC
CGATCATAATATTTTGCTTGGTCGGCATTGAGCAAGTTGGTCCAGGGATA
TATAAAGGTCAGTGGTCTATGTTTTTATCATTCTTTTTTAGATCTNTCCA
GGGATATATAAAGGTCAGTGGTCTATGTTTTCATCATTTCTTTTTTAGAT
CCTACATTTTTACTGGGGAGGCTTGATTGTTCACATGGTTTACAAGTTGT
TAACGCAAGGAAAAGTAAGATTTTTTTAACTTTCATGTCAACCAGAGGCA
TTGTGAACTTTCAACCTCTACTTATAAATAACTAGTTGAAACTACTGAAG
CCTGAACCCAGCTCGCAGATTATGAATTAAAACGGGCAAAAAAGCTAGCT
CTCTAAAGGCAATGCATTGCTCTCTTTTGTCGTTAATGCAAGGACCTCTT
TCAATCTTTTCCCCGACTAAATTCAAAAATTTTGGCCGGGTATTAATAAA
TCAGGATAGTGTGCTGTCGCATCAAGACCGGTCTTATTAATCAGGGTGTT
TCCAAAAGAAAGTTGACGCTAACTTTTAGTCTACTCTTTTCTTTCTTTAA
AAAGCATGCGTATCCATTAAATGCTCTCATTACTTCTTCCAGGTTGACCG
GGACACACGCAGTGAAGATGAAAGTTCTGGCGATGAAACACCGACACAAC
CAACTACTTCCGCTGCTGTCAACAAAAAGAAAAAGTAAATGAAAGAGATG
AAGACCTCATCTTTCATCATGGGAATACACTTGTAGATACAAGTATTATC
TATCAACCAACGTAGATTAAAGTCCCATGTCTGTGCTACATTCGATTTTG
CGCCCATCAATTGGCATCGCCATGACTTAAATGCACTTGTAGGATTTTTT
AATGAAATTGAGCAGGTTTTACAAGATCTGTTTTCCTTAGAACAACAATG
ATTAAAACTATTTGCTTTAGATTTTTTGGATGAAGCAATTTTTAACTTCT
AACAAAGTTTCCTATTTTCTTTTTTCTCGTTTTGAGTTCAAAATAATACC
CTCGTTGCCTCAGCTCCAGGGTGACCAATGGTAAAGAATTTTCTCCTGGG
TGTAATTTATATATCAACTGCTTCTTTTATGTATATTGTTGTTACAAATA
GTTTTTTTTCATTTATTACTCCAATTCAGTAATTTTCCTCTTTTTTTAAT
TTTGTTTTTAATTCGCTTATGATGTATTCTTCAACCCTTTTAAATCCCAC
CCTCGTCATTAAGAATTTTAGCTTGAAACGAAATAACCTTATGAGAAAAT
CTCTTGTTATAACTCTTGTACTATCGACTTTGTTGGACCATTTTTCGCAT
TTAGTTTGATATAAGATTTTTTAATTATGAAGTAGAGTCTCTTTAACTTA
AACCTCTGTAACTCGAATGTCTCCTTAACTCGAACAAGATTTCTGATTTC
TTCAGTTAACAATACATTATAAACCGTTCTCCATATTTCGAAATTTTCTT
AATTTGAACAAATTTATGTGCGTGTTCGATTTATGGAGACTCCACTGTAT
AACAATTTTATAGATAGGAAGCCTTCCTGGCGATTTCAATTTTCTTTAGA
TTTATTTTTCGTTGTTTTTTTAGTTTGAAAAAAGCCTAACATTTTACTAA
AGGCATTGGTTGTGCCTTTCTTCATAGCAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002855XLOC_002855Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005042-exon-sc0000050-1575043694:364944..365198TCONS_00005042-exon-sc0000050-1575043694:364944..365198Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1575043694:364182..364524TCONS_00005042-exon-sc0000050-1575043694:364182..364524Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1575043694:363633..363728TCONS_00005042-exon-sc0000050-1575043694:363633..363728Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1575043694:363163..363291TCONS_00005042-exon-sc0000050-1575043694:363163..363291Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1575043694:362551..362657TCONS_00005042-exon-sc0000050-1575043694:362551..362657Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1575043694:360922..361012TCONS_00005042-exon-sc0000050-1575043694:360922..361012Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1575043694:353785..353850TCONS_00005042-exon-sc0000050-1575043694:353785..353850Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1575043694:352367..353406TCONS_00005042-exon-sc0000050-1575043694:352367..353406Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1510915933:364944..365198TCONS_00005042-exon-sc0000050-1510915933:364944..365198Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1510915933:364182..364524TCONS_00005042-exon-sc0000050-1510915933:364182..364524Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1510915933:363633..363728TCONS_00005042-exon-sc0000050-1510915933:363633..363728Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1510915933:363163..363291TCONS_00005042-exon-sc0000050-1510915933:363163..363291Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1510915933:362551..362657TCONS_00005042-exon-sc0000050-1510915933:362551..362657Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1510915933:360922..361012TCONS_00005042-exon-sc0000050-1510915933:360922..361012Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1510915933:353785..353850TCONS_00005042-exon-sc0000050-1510915933:353785..353850Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1510915933:352367..353406TCONS_00005042-exon-sc0000050-1510915933:352367..353406Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1491911889:364944..365198TCONS_00005042-exon-sc0000050-1491911889:364944..365198Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1491911889:364182..364524TCONS_00005042-exon-sc0000050-1491911889:364182..364524Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1491911889:363633..363728TCONS_00005042-exon-sc0000050-1491911889:363633..363728Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1491911889:363163..363291TCONS_00005042-exon-sc0000050-1491911889:363163..363291Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1491911889:362551..362657TCONS_00005042-exon-sc0000050-1491911889:362551..362657Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1491911889:360922..361012TCONS_00005042-exon-sc0000050-1491911889:360922..361012Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1491911889:353785..353850TCONS_00005042-exon-sc0000050-1491911889:353785..353850Clytia hemisphaericaexon
TCONS_00005042-exon-sc0000050-1491911889:352367..353406TCONS_00005042-exon-sc0000050-1491911889:352367..353406Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:352367..365198 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.94604	15.0055	5.21019	9.65321	71.7366	55.993	77.0412	76.9675	4.79733	8.54603	14.0713	11.6323	6.83555	14.7765	4.83233	12.4245	28.8745	6.90221	1.04326	0.140101	0.00275093	0.00377563	10.5357	15.5777	39.7342	46.1976	12.5187	0.419866	30.0259	27.858
Blast
[Close]
BLAST of TCONS_00005042 vs. Swiss-Prot (Human)
Match: CERS5 (Ceramide synthase 5 OS=Homo sapiens GN=CERS5 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 6.021e-75
Identity = 154/364 (42.31%), Postives = 219/364 (60.16%), Query Frame = 2 
Query:  104 IWNDDFWLPEGFTWKDLEMTPGGIRHPQFSDXXXXXXXXXXXXXXXXXXXXXXALPFCVYLGITNTTSKYEQ-NAICEKVFKEVTANPKKEHIDGLIKQLGWSQGRVQRWFRKRRKANQLPLLKKATESCWRCVFYFWLFCFGGYTILPTDWFYDTRQWMIGYIREQDFNNYMRSYYLMELGFYFSLLFSQFIDAKRKDFWQMFIHHIVTIALIFSSFAISHCRIGVVIMFIHDASDFWLEGAKVFNYAKIQKVCDGLFVMFALTFFITRWVYYPFWVLEAFIFKVPELIGPWKGHWLECTWLIILQILHFYWGGLIVHMVYKLLTQGKVDRDTR--------SEDESSGDETPTQPTTSAAVN 1168
            +W++ FWLPE  +W DLE    G  +P+   +  V  +A  +  +R++FERFIA P  + +GI ++     Q NAI EKVF  +T  P K+ ++GL KQL W+  ++Q WFR RR  ++ P L K  ES WR  FY  +FC+G   +  + WF+D RQ    Y   Q  ++ +  YY+MEL FY+SL+FSQF D KRKDF  MF+HH+VTI LI  S+  +  R+G +IM +HD SDF LE AK+ NYAK Q++CD LFV+F+  F +TR   YPFW+L   +F+  E+IGP+   WL    L+ LQ+LH  W  LI  +  K L +GKV +D R         ED ++  ++P   ++S   N
Sbjct:   16 LWSERFWLPENVSWADLEGPADGYGYPRGRHILSVFPLAAGIFFVRLLFERFIAKPCALCIGIEDSGPYQAQPNAILEKVFISITKYPDKKRLEGLSKQLDWNVRKIQCWFRHRRNQDKPPTLTKFCESMWRFTFYLCIFCYGIRFLWSSPWFWDIRQCWHNY-PFQPLSSGLYHYYIMELAFYWSLMFSQFTDIKRKDFLIMFVHHLVTIGLISFSYINNMVRVGTLIMCLHDVSDFLLEAAKLANYAKYQRLCDTLFVIFSAVFMVTRLGIYPFWILNTTLFESWEIIGPYASWWLLNGLLLTLQLLHVIWSYLIARIALKALIRGKVSKDDRSDVESSSEEEDVTTCTKSPCDSSSSNGAN 378
The following BLAST results are available for this feature:
BLAST of TCONS_00005042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CERS56.021e-7542.31Ceramide synthase 5 OS=Homo sapiens GN=CERS5 PE=2 ... [more]
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