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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005032 ID=TCONS_00005032|Name=TCONS_00005032|organism=Clytia hemisphaerica|type=transcript|length=2253bp
ATCTGAACACTTACCATGGACAATTGGAACAGTATCTTAGCTTTGAGCTG
TCTTTCCAATACCTTGCTCGACGAAAAGATGAAGCAAGAGCCAAAACCAC
CATGGAGTATCTCAAAAAGCTACTCAAGGCGGGTGCAGATACATCACTCT
TAAGTAAAACCAAAGGTCGCGAAGAAACACCCCTTCATATCGCTGCTAAA
TGTGTCGACAATGAATTGATGTCAGTTCTATTGGAGCATGGTGCTAACGT
GAACCAAAAATCTGCAAACGGTGCCACACCCTTGCTCTCTTTGTTTTTCT
TGGAGCGTAGTAAGGACCCGAAAGCAGAAAATGCACGCAAAGTGATGCCC
ATAGAGTGTGTACAGACACTTTTCAAATACAAAGCTGACCCGAACATCCC
GAATGCTGCCGGTGTTACACCGTTTCTCTACTTCATGTCGTCTTTTTTCT
ACGGCTTGAAGGAGGATGCCCAattcctaaaaatgttcttggaAAATGGA
GCGGACGTTAATGTCAGTGATTTTGCTGGTGAGAAACCGATCCATTTTGC
AGCTGGTAAACAGGGCACGAAAGTCATTGATTGCATCAAGATGTTAGTTA
GTCATGGGGCGGATATCAATACGCCTGATGGGAATGGTGAAAATGTCATC
CACTTGGTTGCTAGAAGACAAGAGAGTAGCCGTATGTCCTTTTTTGAAGA
ACTGCCTTGGGATGTTTTGATTGAGAATGGTGCGAAGATTAAAGCTAACA
AAGAAGGCGATTATCCTCATTTCGTAGCTTTTATGTCCAATCGATTTGAA
GTCTTTAAATCTATGCTTAAAAATGGTATTGACATCAATGTGCGAAACAA
GAAAGGTGAAACATTTCTTCACATGTTGCTTCGACGATATATTGAAAACG
GGGCAAGGTGGGGACAGGATCCAGTCGAAGAAACGATTCAACGCATGGCC
AATTGCGACGATCCTGccgattttccaaaatttgaccTTTACCTCAAAGA
TAAGAAAGGTCAAGATTtttatgatattcttatgaaagGTGGTTACGGGT
ACAATTGGAGAAAGcagtttgatttgttgaaacaGAATGGCTATGATACA
CCAACATTAGACAGgTGGAACCGTCGTATGCGAGAAGGCGATAACCCGGA
AAATATGGATGTAAGTGGTGGTAGAGCTGCTGGCGGATTTGATTCGGTAA
GACAGCTAGCATCTAGAGGTGCGCCTGCCCGAGGTGTTCCTTCGAGAGGT
GCAGGCAACAGAGCTATGAAATTCGATATGGGATCCCAATCCAAACGTAC
AACAGGTTCAAGACCAATTGCTGAACGATCGCCACTGACTCCTACAAAAT
CACCGAAATCATCTCCTTCAAACGAAGTCAATAATGAGAAAAAGACAGCC
GGACCGCCTTTAAAAGCGACGCCGGAGACGGAACCGAAACCAGAACCAGA
GCCAGAACCGGAGCCAGAACCGGAGCCGGAACCAAAACAGGCGGAAGAGG
CGGAAGAGGACGAAGACGCCCCAAAGGATGTGATGATTTCTTACAACTGG
GGTCACCAAGCAACGGCATTCAAGATACGTGATTACTTGCGCGATAACAG
CAAACTGTCCGTATGGATTGACACGGAGAAAATGTCAGGTGACATTTACG
GGAAAATGGCGCAAGCGGTTTACAAGTCCAAGGTTATTGTTATGTGTTTG
AGTGAAAAGTATGAGATGTCGGATAATTGTAAGTTTGAGTACGAATATGC
TgccaagaagaagaagaattttgTGCCAGTAATGGTTCAACCAGATTATG
AGCCGAGAGGAGGGTTCAGTTTGGATATGATTTTGGGAAGCAAGTTGTAT
TATGAGCTATTCGAGGAGAAAGACTTTAAGGAAAACATTCCGAATGTTTT
GAAAGCTATTCAAGGAGTTTTGGAAAAGATGTAAGTTCTAACGCTTCAGA
ATTTAGAAGACGATGGAGTTTTTTTGCTAATTATTACCTAGTTTACATAT
TGATTGTACATACCGTGTGTTGTGTGTTATTTAGTATTAAGATTTTGTAG
TCATGTTTTtattaatgtttatttttaggGTTTCTTTAATAGATTTGTTA
acataaattttctttctttagtaCTCTATATGTAGGAGATGtgagggagt
ttctaaacatcgaccagaaatggcgaccacgacaggcgaccagataaatt
tgggttatcgagtttacctgctctctccaccgtagagaacatccaaatcg
agt Run BLAST on NCBI transcript from alignment at sc0000050:63492..66101- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005032 ID=TCONS_00005032|Name=TCONS_00005032|organism=Clytia hemisphaerica|type=transcript|length=2610bp|location=Sequence derived from alignment at sc0000050:63492..66101- (Clytia hemisphaerica)
ATCTGAACACTTACCATGGACAATTGGAACAGTATCTTAGCTTTGAGCTG
TCTTTCCAATACCTTGCTCGACGAAAAGATGAAGCAAGAGCCAAAACCAC
CATGGAGTATCTCAAAAAGCTACTCAAGGCGGGTGCAGATACATCACTCT
TAAGTAAAACCAAAGGTCGCGAAGAAACACCCCTTCATATCGCTGCTAAA
TGTGTCGACAATGAATTGATGTCAGTTCTATTGGAGCATGGTGCTAACGT
GAACCAAAAATCTGCAAACGGTGCCACACCCTTGCTCTCTTTGTTTTTCT
TGGAGCGTAGTAAGGACCCGAAAGCAGAAAATGCACGCAAAGTGATGCCC
ATAGAGTGTGTACAGACACTTTTCAAATACAAAGCTGACCCGAACATCCC
GAATGCTGCCGGTGTTACACCGTTTCTCTACTTCATGTCGTCTTTTTTCT
ACGGCTTGAAGGAGGATGCCCAATTCCTAAAAATGTTCTTGGAAAATGGA
GCGGACGTTAATGTCAGTGATTTTGCTGGTGAGAAACCGATCCATTTTGC
AGCTGGTAAACAGGGCACGAAAGTCATTGATTGCATCAAGATGTTAGTTA
GTCATGGGGCGGATATCAATACGCCTGATGGGAATGGTGAAAATGTCATC
CACTTGGTTGCTAGAAGACAAGAGAGTAGCCGTATGTCCTTTTTTGAAGA
ACTGCCTTGGGATGTTTTGATTGAGAATGGTGCGAAGATTAAAGCTAACA
AAGAAGGCGATTATCCTCATTTCGTAGCTTTTATGTCCAATCGATTTGAA
GTCTTTAAATCTATGCTTAAAAATGGTATTGACATCAATGTGCGAAACAA
GAAAGGTGAAACATTTCTTCACATGTTGCTTCGACGATATATTGAAAACG
GGGCAAGGTGGGGACAGGATCCAGTCGAAGAAACGATTCAACGCATGGCC
AATTGCGACGATCCTGCCGATTTTCCAAAATTTGACCTTTACCTCAAAGA
TAAGAAAGGTCAAGATTTTTATGATATTCTTATGAAAGGTGGTTACGGGT
ACAATTGGAGAAAGCAGTTTGATTTGTTGAAACAGAATGGCTATGATACA
CCAACATTAGACAGGTATGCAATTTTTATTTTCCTAAACTGGACGGATTT
AGAAATCATGACAACTTTTTGGAATATTTGATAATGGTGCCTCTGTGGCT
CATTTCTGCTAATTTGAGTTGTTTTTGGCAGTTCTAGCCCTACTTCGATG
GCTCTAACTTTTTCTCCAGCAAAAAAATTCTTCATCCTCTACTACTTGTT
TTTAAATGCATACTTTTGAGACTACCTTAAATAAATAATAATTGATATCT
TTTGTTGCGCTCCAAAATCTTCCTGATGAACTTTGAAGTAACTCCCTATG
TCGAATATTTAACCTTGACTTTTAGATATTTGCTTTGTGCCCAATTTTAT
ATTGTTTCTTTTATTTCAAAGGTGGAACCGTCGTATGCGAGAAGGCGATA
ACCCGGAAAATATGGATGTAAGTGGTGGTAGAGCTGCTGGCGGATTTGAT
TCGGTAAGACAGCTAGCATCTAGAGGTGCGCCTGCCCGAGGTGTTCCTTC
GAGAGGTGCAGGCAACAGAGCTATGAAATTCGATATGGGATCCCAATCCA
AACGTACAACAGGTTCAAGACCAATTGCTGAACGATCGCCACTGACTCCT
ACAAAATCACCGAAATCATCTCCTTCAAACGAAGTCAATAATGAGAAAAA
GACAGCCGGACCGCCTTTAAAAGCGACGCCGGAGACGGAACCGAAACCAG
AACCAGAGCCAGAACCGGAGCCAGAACCGGAGCCGGAACCAAAACAGGCG
GAAGAGGCGGAAGAGGACGAAGACGCCCCAAAGGATGTGATGATTTCTTA
CAACTGGGGTCACCAAGCAACGGCATTCAAGATACGTGATTACTTGCGCG
ATAACAGCAAACTGTCCGTATGGATTGACACGGAGAAAATGTCAGGTGAC
ATTTACGGGAAAATGGCGCAAGCGGTTTACAAGTCCAAGGTTATTGTTAT
GTGTTTGAGTGAAAAGTATGAGATGTCGGATAATTGTAAGTTTGAGTACG
AATATGCTGCCAAGAAGAAGAAGAATTTTGTGCCAGTAATGGTTCAACCA
GATTATGAGCCGAGAGGAGGGTTCAGTTTGGATATGATTTTGGGAAGCAA
GTTGTATTATGAGCTATTCGAGGAGAAAGACTTTAAGGAAAACATTCCGA
ATGTTTTGAAAGCTATTCAAGGAGTTTTGGAAAAGATGTAAGTTCTAACG
CTTCAGAATTTAGAAGACGATGGAGTTTTTTTGCTAATTATTACCTAGTT
TACATATTGATTGTACATACCGTGTGTTGTGTGTTATTTAGTATTAAGAT
TTTGTAGTCATGTTTTTATTAATGTTTATTTTTAGGGTTTCTTTAATAGA
TTTGTTAACATAAATTTTCTTTCTTTAGTACTCTATATGTAGGAGATGTG
AGGGAGTTTCTAAACATCGACCAGAAATGGCGACCACGACAGGCGACCAG
ATAAATTTGGGTTATCGAGTTTACCTGCTCTCTCCACCGTAGAGAACATC
CAAATCGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005032-exon-sc0000050-1575043694:64988..66101 | TCONS_00005032-exon-sc0000050-1575043694:64988..66101 | Clytia hemisphaerica | exon |
| TCONS_00005032-exon-sc0000050-1575043694:63492..64630 | TCONS_00005032-exon-sc0000050-1575043694:63492..64630 | Clytia hemisphaerica | exon |
| TCONS_00005032-exon-sc0000050-1510915933:64988..66101 | TCONS_00005032-exon-sc0000050-1510915933:64988..66101 | Clytia hemisphaerica | exon |
| TCONS_00005032-exon-sc0000050-1510915933:63492..64630 | TCONS_00005032-exon-sc0000050-1510915933:63492..64630 | Clytia hemisphaerica | exon |
| TCONS_00005032-exon-sc0000050-1491911889:64988..66101 | TCONS_00005032-exon-sc0000050-1491911889:64988..66101 | Clytia hemisphaerica | exon |
| TCONS_00005032-exon-sc0000050-1491911889:63492..64630 | TCONS_00005032-exon-sc0000050-1491911889:63492..64630 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:63492..66101 - |
Blast
BLAST of TCONS_00005032 vs. Swiss-Prot (Human)
Match: TRPA1 (Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=1 SV=3) HSP 1 Score: 86.6557 bits (213), Expect = 2.736e-17 Identity = 83/300 (27.67%), Postives = 133/300 (44.33%), Query Frame = 3
Query: 84 ARAKTTMEYLKKLLKAGADTSLLSKTKGREETPLHIAAKCVDNELMSVLLEH-GANVNQKSANGATPLLSL----------FFLERSKDPKAENARKVMPI---------ECVQTLFKY--------KADPNIPNAAGVTPFLYFMSSFFYGLKEDAQFLKMFLENGADVNVSDFAGEKPIHFAAGKQGTKVIDCIKMLVSHGADI-NTPDGNGENVIHLVARRQESSRMSFFE--ELPWDVLIENGAKI-KANKEGDYPHFVAFMSNRFEVFKSMLKNGIDINVRNKKGETFLHMLLRR 887
A K +E +K LL GA+ +L PLHIA + ++NE+M VLLEH +VN + NG T ++ L++ P N PI EC++ + ++ + N N TP + + D + +KM L+NGA ++ + IHFAA + T+++ + S DI NT DG E ++H R S F+ EL D LI GA I K + EG P +A S + + +L G +++++ G FLH+ +++
Sbjct: 105 AVEKNQIESVKFLLSRGANPNL---RNFNMMAPLHIAVQGMNNEVMKVLLEHRTIDVNLEGENGNTAVIIACTTNNSEALQILLKKGAKPCKSNKWGCFPIHQAAFSGSKECMEIILRFGEEHGYSRQLHINFMNNGKATPLHLAVQN------GDLEMIKMCLDNGAQIDPVEKGRCTAIHFAATQGATEIVKLMISSYSGSVDIVNTTDGCHETMLH---------RASLFDHHELA-DYLISVGADINKIDSEGRSPLILATASASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQ 385
The following BLAST results are available for this feature:
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