TCONS_00005018 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005018
Unique NameTCONS_00005018
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005018 ID=TCONS_00005018|Name=TCONS_00005018|organism=Clytia hemisphaerica|type=transcript|length=269bp
TATCTtatcacaaacaacaaagaattccAACAAGAGCTCAAGACGATGAA
GTCCATGGATTACATCATtcagaaattgagaaaaatcgAGAACGAATTCG
AGGAGGGATATCCTTACCATGAGCTGTTGGTTCCAGAGAACGATGAATAG
Ttttggatgaaatattttgtttatgaaaaaatgtttttggaagtaacttg
aaaataaggaaaacaGTTTTCGAGAATTTCTTCCCCAAAGGTTAAGTAGA
CCTATAGTTATCCACAGAC
Run BLAST on NCBI

transcript from alignment at sc0000050:809873..810420+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005018 ID=TCONS_00005018|Name=TCONS_00005018|organism=Clytia hemisphaerica|type=transcript|length=548bp|location=Sequence derived from alignment at sc0000050:809873..810420+ (Clytia hemisphaerica)
TATCTtatcacaaacaacaaagaattccAACAAGAGGTAATCAAAATTAT
TTACGTCATTTACTCGACATGGGGGAATGGGTTCGAGTGGAAGAGCACAC
TGAAAGCGTGGTAGTTCCGGAGCGGAGCCAGATTCTGAAATTCCTCTGGA
TCCGAATTTCTACTTTGTTCTCTCTGGTTATGACCGTAAAACTAATCGAA
CCGTTTAGATATAAACAATATTTTCTGAGCATCGCAATTAAGGTTGAAGA
AATGACAATGAGTTTGCTATCTCTGTTTatctgcaaaaaaattttcttac
tttACATTTTACCAGCTCAAGACGATGAAGTCCATGGATTACATCATtca
gaaattgagaaaaatcgAGAACGAATTCGAGGAGGGATATCCTTACCATG
AGCTGTTGGTTCCAGAGAACGATGAATAGTtttggatgaaatattttgtt
tatgaaaaaatgtttttggaagtaacttgaaaataaggaaaacaGTTTTC
GAGAATTTCTTCCCCAAAGGTTAAGTAGACCTATAGTTATCCACAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002846XLOC_002846Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005018-exon-sc0000050-1491911889:809873..809908TCONS_00005018-exon-sc0000050-1491911889:809873..809908Clytia hemisphaericaexon
TCONS_00005018-exon-sc0000050-1510915933:809873..809908TCONS_00005018-exon-sc0000050-1510915933:809873..809908Clytia hemisphaericaexon
TCONS_00005018-exon-sc0000050-1575043694:809873..809908TCONS_00005018-exon-sc0000050-1575043694:809873..809908Clytia hemisphaericaexon
TCONS_00005018-exon-sc0000050-1491911889:810188..810420TCONS_00005018-exon-sc0000050-1491911889:810188..810420Clytia hemisphaericaexon
TCONS_00005018-exon-sc0000050-1510915933:810188..810420TCONS_00005018-exon-sc0000050-1510915933:810188..810420Clytia hemisphaericaexon
TCONS_00005018-exon-sc0000050-1575043694:810188..810420TCONS_00005018-exon-sc0000050-1575043694:810188..810420Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:809873..810420 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5.55488	2.59455	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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