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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005009 ID=TCONS_00005009|Name=TCONS_00005009|organism=Clytia hemisphaerica|type=transcript|length=1568bp
CTTTAACAACCTCGGCGAGGTAAAGACATCGTTTATAAACGCTCGATTTA
CGAcgaagcagcaaaatttcaagaataaatATAGATAAAGAGAGAGGAGA
ATCGTTAAGCTAAAAAAAGGGGGGAGAGTAATTAAAACCGGTCAATTATT
AAAAGATtgcttttaaatttcttttggattaaaaaaagaCAATAGTAGTC
TCGGTTGATCGATCATCAATATAAAAGAGAGTAACATCCTTCGATACCGG
TCAGTTATCTTACGAGCAATGTTAAATACAGACCATTATTCAGCAGCTAA
TACTGTTAATAAAATGTGCTACCAAATGTATCCTCCAATAGAAGACGAAT
ATCCATGTTTCAACCGTCTCTCATTGTGGAGTTTCATCTTCAACCTACTG
GAAGACCAGCATACACCTTGCGTCCGATGGACTGATCGAGAAAAACTGGA
ATTCAAAATCGAAGACACTGAAGGATTAGCTCAAGAATGGGGCCAACGTA
AGGGCAAGAATACAATGACTTGGGCTAAATTCGCCAGAGCTATGCGATAT
TATTACGGTAAAGACGTCTTAGAGAAAGTCGAACGTAAACGATTCACCTA
TAAATTTATCGATTCGCCCAAAACGCGATCAGTGATCAGATCAACTAACA
GAGCTGGCAGATCAACAAATCCTTCACCGGTTTCACCAGCAATGTCGTCT
ACAGATTCCTCCACACAATCCATCATCTCTGAAGAAGATTATGCCAATAT
CTCAACAGCAATTGATATTATGAATCCACCAACTATCACAACAGCTTCTG
ATGGAAACCTCCTCACAAACAACACCATCAGGATCAACAACAACACTTCT
GCTTATACCAATGACAGCAAAGACTATGAACAAGTCAAAATTgaccaaat
caaaaaagaacTTGAAATCTGTGTCACACAATGTCAGCACGCAGAACAGA
ATTCATATACACAACAACAATCAacaaactctctttacaattcAAACTCG
TCTTTCAATACACAGACTACAAATGCCAACATACAAAACCGTTTTTATAA
CCACCACCAAAATGCTGTTTTCAATCTACCAACATTAAACGCGAATTACC
AACCAACTGCATTCAACTCGTCATCAAATGACCAAAAGGTTCCAAACGGG
TATTCAGCTTCTAACTTCACTGATTATTTTGCCGAAGAAGACTTCTCACC
TAGATCGAGTAACTCACCACAACAGAGTTACTCCCCACAACCGAGTTACT
CCCCACAACCGAGTTATATTGAACGACAAAACTCGTTAACTGCTTGTGAA
AGAGCAATCTTAGCATCACTTGTTGATACTTtccaataaaaagagacaat
tTTTCGACAACATTACAAAGACGCGTTATAAAAAACTAaattattttcag
aaaaagttacaacaacaaaaaaaacaaagagaaaatttATATTTGTAGGT
AATGTTTATGTAGTTTAGGTATTATATTATGGACTGTAAATATCAGAGTA
CTTGTAAATAATATTCGGGATATACAAAGGATTTAGAAAAAGATATCAAT
ttaaaaataacattgaaa Run BLAST on NCBI transcript from alignment at sc0000050:537608..539460+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005009 ID=TCONS_00005009|Name=TCONS_00005009|organism=Clytia hemisphaerica|type=transcript|length=1853bp|location=Sequence derived from alignment at sc0000050:537608..539460+ (Clytia hemisphaerica)
CTTTAACAACCTCGGCGAGGTAAAGACATCGTTTATAAACGCTCGATTTA
CGAcgaagcagcaaaatttcaagaataaatATAGATAAAGAGAGAGGAGA
ATCGTTAAGCTAAAAAAAGGGGGGAGAGTAATTAAAACCGGTCAATTATT
AAAAGATtgcttttaaatttcttttggattaaaaaaagaCAATAGTAGTC
TCGGTTGATCGATCATCAATATAAAAGAGAGTAACATCCTTCGATACCGG
TCAGTTATCTTACGAGCAATGTTAAATACAGACCATTATTCAGCAGCTAA
TACTGTTAATAAAATGTGCTACCAAATGTATCCTCCAATAGGTTAGTATC
AatgtattttgttgttcttTCGTATACTCTCATCTTCGTCAACCATGATA
ATAAAGCATTGAAAGAAACGTGCATTGTTGCATTCGCTCTTACATTTTTC
GTATTGCAAAATTtctaaacttaatttttttaattttcattataGAAGAC
GAATATCCATGTTTCANCttatttttcaatataaaaGCATTGAGGAAAAC
GTGCATTGTTGCATTCGCTCTTACATTTTTCGTATTGCAAAATTtctaaa
cttaatttttttaattttcattataGAAGACGAATATCCATGTTTCAACC
GTCTCTCATTGTGGAGTTTCATCTTCAACCTACTGGAAGACCAGCATACA
CCTTGCGTCCGATGGACTGATCGAGAAAAACTGGAATTCAAAATCGAAGA
CACTGAAGGATTAGCTCAAGAATGGGGCCAACGTAAGGGCAAGAATACAA
TGACTTGGGCTAAATTCGCCAGAGCTATGCGATATTATTACGGTAAAGAC
GTCTTAGAGAAAGTCGAACGTAAACGATTCACCTATAAATTTATCGATTC
GCCCAAAACGCGATCAGTGATCAGATCAACTAACAGAGCTGGCAGATCAA
CAAATCCTTCACCGGTTTCACCAGCAATGTCGTCTACAGATTCCTCCACA
CAATCCATCATCTCTGAAGAAGATTATGCCAATATCTCAACAGCAATTGA
TATTATGAATCCACCAACTATCACAACAGCTTCTGATGGAAACCTCCTCA
CAAACAACACCATCAGGATCAACAACAACACTTCTGCTTATACCAATGAC
AGCAAAGACTATGAACAAGTCAAAATTgaccaaatcaaaaaagaacTTGA
AATCTGTGTCACACAATGTCAGCACGCAGAACAGAATTCATATACACAAC
AACAATCAacaaactctctttacaattcAAACTCGTCTTTCAATACACAG
ACTACAAATGCCAACATACAAAACCGTTTTTATAACCACCACCAAAATGC
TGTTTTCAATCTACCAACATTAAACGCGAATTACCAACCAACTGCATTCA
ACTCGTCATCAAATGACCAAAAGGTTCCAAACGGGTATTCAGCTTCTAAC
TTCACTGATTATTTTGCCGAAGAAGACTTCTCACCTAGATCGAGTAACTC
ACCACAACAGAGTTACTCCCCACAACCGAGTTACTCCCCACAACCGAGTT
ATATTGAACGACAAAACTCGTTAACTGCTTGTGAAAGAGCAATCTTAGCA
TCACTTGTTGATACTTtccaataaaaagagacaattTTTCGACAACATTA
CAAAGACGCGTTATAAAAAACTAaattattttcagaaaaagttacaacaa
caaaaaaaacaaagagaaaatttATATTTGTAGGTAATGTTTATGTAGTT
TAGGTATTATATTATGGACTGTAAATATCAGAGTACTTGTAAATAATATT
CGGGATATACAAAGGATTTAGAAAAAGATATCAATttaaaaataacattg
aaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005009-exon-sc0000050-1491911889:537608..537948 | TCONS_00005009-exon-sc0000050-1491911889:537608..537948 | Clytia hemisphaerica | exon |
| TCONS_00005009-exon-sc0000050-1510915933:537608..537948 | TCONS_00005009-exon-sc0000050-1510915933:537608..537948 | Clytia hemisphaerica | exon |
| TCONS_00005009-exon-sc0000050-1575043694:537608..537948 | TCONS_00005009-exon-sc0000050-1575043694:537608..537948 | Clytia hemisphaerica | exon |
| TCONS_00005009-exon-sc0000050-1491911889:538234..539460 | TCONS_00005009-exon-sc0000050-1491911889:538234..539460 | Clytia hemisphaerica | exon |
| TCONS_00005009-exon-sc0000050-1510915933:538234..539460 | TCONS_00005009-exon-sc0000050-1510915933:538234..539460 | Clytia hemisphaerica | exon |
| TCONS_00005009-exon-sc0000050-1575043694:538234..539460 | TCONS_00005009-exon-sc0000050-1575043694:538234..539460 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:537608..539460 + |
Blast
BLAST of TCONS_00005009 vs. Swiss-Prot (Human)
Match: ELF2 (ETS-related transcription factor Elf-2 OS=Homo sapiens GN=ELF2 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 3.410e-18 Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = 2
Query: 374 LWSFIFNLLEDQHTPC---VRWTDREKLEFKIEDTEGLAQEWGQRKGKNTMTWAKFARAMRYYYGKDVLEKVERKRFTYKFIDSPKTRSVI 637
LW F+ +LL+D++T C ++WT REK FK+ D++ +++ WG+ K K M + RA+RYYY + +L KVE +R Y+F D PK VI
Sbjct: 210 LWEFLLDLLQDKNT-CPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKDMPKNIVVI 299
The following BLAST results are available for this feature:
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