TCONS_00005002 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005002
Unique Name	TCONS_00005002
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2685

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000050:470903..477751+

transcript sequence

>TCONS_00005002 ID=TCONS_00005002|Name=TCONS_00005002|organism=Clytia hemisphaerica|type=transcript|length=2685bp
NAAATATTCGACCAAATTATACAGGGAAACCAATCGTGGTGACAGTGGAT
TTGACTGTTATGGCGTTCGGTGCAATCAATGAGAGAGGAATGACATTTGC
CACTGATTTATATTTCCGACAAACCTGGCAAGACTATCGTTTACAGCATA
AAGCCGGGACCGTATTAACGCCCTTATTAGGGCGGAAAATACCGACTGAT
TTCATATGGACACCAGATACGGTGATTTCAAATTCAGTCAAAACACGCAA
ACATAAAGTGACGACCAACAATGAGAAATTGGATATTTACCCAAATGGAA
CAGTGTTTTGGGGAAGCAGAATCACCGTGATATCGAAATGCAAAATGGAT
TTTCGGAATTACCCGATGGATATCCAAAGCTGTTCTTTGGTCATCAATAG
TTATGCATACTTGAAAGAACATTTGGAATACAAATGGAAACAAGACAAGG
TTAGCATACAGTCAGAAGAAATGGCTCAATATACTGTCAAAAGTGCATAC
AACCTCAGAAGAAATGCTAACTTCTCAGATTTAGGCACGTTTTCAGAATT
GGTGGTAACATTTACATTTGCTCGACAGATTTCAGTGACCATCATCCAGT
TGTTTTTCCCAGCCACCGCTATTGTGTCGGTATCGTGGGTTTCACTGTGG
ATTCACAAGAACTGTGTCTCTGCTAGAGTCGCATTATGCGTAACAACGAT
GCTAACAATCTGTGCTTTCTGGGGCTCAGTGAATCGTCAGCTGCCACGTG
TCAATTATCCAAAAGCTGTTGACTACTATTTCATAGTATCGTTCCTATTC
ATTATGTTAACTCTGGTCGAATTCAccattgttttgaattttgattttga
ttctcTGAAAACGAAATCGGTGAAAAAGCAATCTGGTAAAGACACATTGA
AACGAGAAAATAGTTTACGAAATCAGTTACCGAAGCACACTCACCATGTA
TTACGCCGAAAGATCAGCCGTTTGGATGCAAATGTCTTACAAGGAGATCT
AGTCTGTGAAATAGACAACACAGGGCGAACAGTACATTACTCATTGGCCA
AAAAGGAGCAATGGAAAAAACCAAAagttgataaaaacaaaatgcCGTAT
TTCTTTAAATATTATCCGGTGACAGGGAAGCCGGCGACTTTGGATGTGAT
CGCCAGGTTCTTATTCccctttgtttatttttgttttaatgtgatttttt
ggaaaacatacAGTTTGTAAAAGATTGACATTTCAATATTCTTCAATGTA
CTTCGACAAAGAGTTGTATTACAAATTCGAGCTGTATCAAAAGTTTGTCA
ATTTCGACGAATTGGAAAGGTAATCGAATTATGAAGTGGAGGCGTTCAAA
GCTGAGTATGCTAACGACATAAAGAAATTACTATGTAAAACTGACAATAA
AATCCATGCAGTTGGAAAGATAACATGAAAACACTAACATTCATAACACT
TTAATATGGATAACATTATTTAGCTGGATTAGTAAAGAAGTATACTTTAA
ATGACATCCcgcccttctcacagacccagtgagATTTTTTCACCCAACGG
GGGTAAAAATagcggaccaaaactcgatgggggttAATATTCCCATTTTG
CTCatgactggggatttgaattccattgttttctaccaagaaaattcagt
agggatggaaaaaatggcaCAAAAACTTGCAGTGAGGACAAGAATGagag
taaaattttccacctGGGACAATGTTTTGACAAATTGTTTTAAATGACAT
CCCAATTTTGCGTGTCACTGTTTGACAAGTTTACGATCTTTGTTCAAACA
CAGTAATCAAATATTGTTGTAAGACTGTAACACAAGTTCAAGTTTAAGCG
TGAAGGgaacaatccgtgccataatatatttgcacttttggctaattaac
catttttcgaaaattgaagttcgagcgagaatgtcaatttttggcCCTcg
acttgatttcatcgattattacgATCTAgcagggatttattggtttctag
gctatatttcaagcgctactggaccatttttgaacttttggatcctcaga
tcctaaggtgtTAAGTCtaaagtctcatgttaaaactcagagttaaaact
ctacccttacaacctactttagagcacttacaaatcgattgtggtttcaa
aacaccccggtgaatttcccttttgtgccaagtattttgtcactgattga
aGAAAAATGTCTTTAAAGGAAAATAAAGCAACTTTTTCACAACCCAAATA
CGCATGACCCGTGCGGTTTTCACACAAAAGTCGGATTGGAAGTAGACTCT
ATCCCtggatttcaaaatattctccCCTCTAAAATATAGAAAGCGCTAAA
TTCTATCCCTCGTCTCATAAAGCGGCGCAAATCTTAAGGCGTCACTTTTC
CTTGATTCGGAAAATATCGAATAAGATTCAGGTCTATccctttcgggctt
taaactcaatggtcaaATATCAGAACAAAGCAATGTTACTAGACTATGCG
CTATAGTCTAGGACGAATtcgaataataaaaaaataacctCAAACACGGA
AATTAGCAGTCGGgcggaaattttgtccacgcgggCGAAAATAGTTGGAG
AGTCTCTATTTTCCGCCGCGCAATTTATTACGTTTTATACGCCGCGCAAt
ttattacgttttataatatacaactaTTTTATAtc

Run BLAST on NCBI

transcript from alignment at sc0000050:470903..477751+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005002 ID=TCONS_00005002|Name=TCONS_00005002|organism=Clytia hemisphaerica|type=transcript|length=6849bp|location=Sequence derived from alignment at sc0000050:470903..477751+ (Clytia hemisphaerica)
NAAATATTCGACCAAATTATACAGGTAATTTTAGAttgtatattataaaa
ttggtcaaattattcCTCAGGGAGCAAGGGAGATTGCTTTCgatttaggg
gggggggaggtCCCCTTTTTCAGACCAGAATTATCTATCGGCATTTGTAA
ATTTTCTATTCTGTTGTATTTCAACGGGTAAAATTCCAAATTTCGAATAC
ATTACCTATATTCAAGGcagtttaaatttcatttttccaaatatcATGGC
CAGGATTGTAGAGCTTTTAgaagaaatagagaaaaattgaTCACGAGCAC
ATCTGAGATCTCTACATAGTAGAATATTtgtatgtttttgtttgttaCTA
GGGAAACCAATCGTGGTGACAGTGGATTTGACTGTTATGGCGTTCGGTGC
AATCAATGAGAGAGGAATGGTATTCTCacgtttgaatgtttttttataag
aatcaataaactttgaaatatagccgaaaattgttcttatttttagaatA
CTTAAATGAGATAAATTTTCGCAGGAATCATATTTcacggttgagctcat
ccgcgaaatttcaaGATTAATTTTGCGAATGGCACTGTagaattttgagc
ttttttacGCCAAATTATGAATGTTGGTTGTCGAAATACCCATCAtaagc
gcttctttgatgccagtagacattattttaaaatttttttgagtttttct
caaaaattactTTGCAAATAAGACCTGATTTCCATTGGGATTTAATTCTG
CGAGATCCCGCGAGATTtgatccccgcgaaagtttatcccatcaaaatat
tctaaaaataatATGCTTAATTGATAACGAAGGACTTTTTATAACCCATC
AGCGTAATAAATATTCCATAATAATCAGATAATAGAATCAGATAACAGCA
GGTGACCTTGTTGCCGAGAGGGGGTTTAGTCGCGAGAATTAAGGAGTTGG
TCCTACGATACTGttgcaaaagtcaaaaacaaatTACGAGTGGTGTTTAT
ATTAGAGACTTTCTTATTTTTGTATCAAAACTACTTTTAGACATTTGCCA
CTGATTTATATTTCCGACAAACCTGGCAAGACTATCGTTTACAGCATAAA
GCCGGGACCGTATTAACGCCCTTATTAGGGCGGAAAATACCGACTGATTT
CATATGGACACCAGATACGGTGATTTCAAATTCAGTCAAAACACGCAAAC
ATAAAGTGACGACCAACAATGAGAAATTGGATATTTACCCAAATGGAACA
GTGTTTTGGGGAAGCAGGTATTATATTGCTATACTATCAATTCAACATTT
GAGGATGGGGTTAGTAAAATTAGTTGATGTTAGACCTTAATCGATTTGTC
AATTTAAACAGCTTGAAAATGCAATTGCTGCTTCCCCCGCCTTAATCCTT
CCaatcaaatgtttttcattgatGTCACGAGGGAATTTACAATACGGAAG
GTCATTTATCAAGGCTTTCTTATTTCTAGAATCACCGTGATATCGAAATG
CAAAATGGATTTTCGGAATTACCCGATGGATATCCAAAGCTGTTCTTTGG
TCATCAATAGTTGTAAGTTCCTCCTATATCACCATGTGATGTATATTTAC
TTGTGATCGTTAAAAGGCTTTTCTCGGAGAGATCACCCTCCAACAACTTT
GCTTCGAAAGACATAGCATAAAGCTTGACACAAGTTTAAGAAATCAATCA
ACTCAAAACACTAGTGTCGCTCATTTTATCGTTCGTTTAATTCCAAGGGA
AGGGGAATAGCTCCATTTCCTCACATCCACGAATggttttcatttctttt
gaaaatatccGTTTAGAATTTTCGTTTAATTTCTCTGAGTTATTGCTGAA
AACAGGATTAAAGTGCAATAACTTAGTGGGTCCTTAATGGGCCCCAGCGA
GCTATTTTGAGTCGTGGGGGCCaatattttggagaaaaaaatatcGTCCA
CCATGTTTGGGCGAGGAGGAAAATTTTTCAcgttttacaccctcaaaaca
ccttaaaaagTTATCTaaattggggagaataatagtttttatggcttaaa
atagtaactttaaaaaaagtatgGCATGGTCTGCAAGAGGGGTTAATATC
TATTCTTCAGATAATTTGCCAGATTTCAGTCTCACGTTATAAAATTACCT
TCTTTAGATGCATACTTGAAAGAACATTTGGAATACAAATGGAAACAAGA
CAAGGTTAGCATACAGTCAGAAGAAATGGCTCAATATACTGTCAAAAGTG
CATACAACCTCAGAAGAAATGCTAACTTCTCAGATTTAGGTATATTCATT
TCTACACCATTCAGTGTCGCAGCTacagaaacaaaacaaaagcaaatttC
CCCTTTTCCCCCATTTTCAATGTTCAATGAACGATGGGTTGGCGGTGCAC
ACTGAACATTGCAATGGGGTAAGGGGGTCTGTTTTCTACAATCTTACTGC
AATTTGCTATGTCTTAAACATTCTTTCCCATGATTGGGGGGGGGGGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggaaaacggtatttcg
aacccctacaaacccccatGATTTGATTGTATAGTTGTATTTCTTGTTAT
GAGAGCGTCAAATATGTATCGTTGAAGTCCTCGCGTGGGATAGGTTTTAA
GGCTAGAATAATATGCTTTTATTTTCATCCTTGAATTTTTTCGTGTgtat
ttcatttatatttcatcCTTTTAGGCACGTTTTCAGAATTGGTGGTAACA
TTTACATTTGCTCGACAGATTTCAGTGACCATCATCCAGTTGTTTTTCCC
AGCCACCGCTATTGTGTCGGTATCGTGGGTTTCACTGTGGATTCACAAGA
ACTGTGTCTCTGCTAGAGTCGGTAGGttgaaatctttatttttatcttat
CGGCGGTCGGTCCCTATCAGGTTATCTATGTAACAGATTCAAAAATCTct
agggaaatttcaaactctttgCTGTCATAAGTCGAAACAGATATAAACAG
AGTCATAAACAGATATAAAATATAAACCTCTGAAGTACTCTGGCACAGAC
TACTTATATGTTCACTGCTAAATCTTGAGCCTTTTTAACTACTAGACCAA
CAaataaaacagacaaaaattaaaatcgaGTCAAATTCAAACTTGTTTAA
AACGTATTTGGAGGTTTCATAgttgatattgtcgatttactctgacaaaa
atgcaatttttcagaACCTATTTTCAGGGTGAacatctttttttcatttt
cttaacgAATTATTagtaaatatttattttgcaGAACTAATTCTCAATGT
ATGCACCGAATTCTGTAACTTTAGATTTTTCCTACGAAAATTAGTTAGTG
CATTCAAAAGGTGTCGCTTTTGATAGAAATGCCACCAGACTGAAAGCCAT
TAACGAAAAGAAAGATATATATCGAGGTATCGTTTTCATGACTCGAAGCT
CTATAACAAGTTGTCCCTTCGCAGTTCACAATGCTTTacaaaccttactc
cataactcgaacaaattttgtgttctccgtgcgtgttcgagttattgagA
CTCCATTGTATTTGGGTCTTGATCAGATGAAAGCTAGGCTCGTTTCGGgt
gtaaaactcctactcttcgggatatgcgcactgctcttgttttgaatatt
gaattgcTTCGGatacatcgcatgcgcactgaggttttgatgaaacaata
gagagtttcgaaagcTACCCCACTAAAAAGTGAAtccccggtgggggtca
ctagtggccgcccaTAGCACAGCAGTGTCTATAGACCAAAAGTAAGGATT
AAAAAAGCCtagagctgtctattgtgtagactaatgAAAACAACTCTTAC
CATTTGTCTAATTCTTTTTTTCCCAGCATTATGCGTAACAACGATGCTAA
CAATCTGTGCTTTCTGGGGCTCAGTGAATCGTCAGCTGCCACGTGTCAAT
TATCCAAAAGCTGTTGACTACTATTTCATAGTATCGTTCCTATTCATTAT
GTTAACTCTGGTCGAATTCAccattgttttgaattttgattttgattctc
TGAAAACGAAATCGGTGAAAAAGCAATCTGGTAAAGACACATTGAAACGA
GAAAATAGTTTACGAAATCAGTTACCGGTATGTATCTaccattttcatat
tttgaaaagttttcattaCTTGTCTATTGCGGAAAAAGTTTTTACCCTCG
TGTTGAAAAGGTGCTCTTTGGAAAGACAGCCCCCTTGGTCTTTACAGTGG
GCAAATATTTATGGTAGCCAACTTGGATTAAAATTTCATAGACCAGACCC
TTCCGTAAATTGGTCTATTCATCCCTCATGTAATTCCGACAACCTTCATA
AAGTAAGATTTAGAAAGGCCGGAATCACTTATTGAAAAAAGAGAAACCTT
TTCCCCGACTCTTTATTAGCTATCAGCAATTCCGATCTTTTATTATTCCC
AGGTTTAAAGAAGGATATCGGAATCCTCCAAGAAAGGATTGTGAAGTGAT
TATCTCCCATTAGAACTTTAGATCAATCATAATTTGATGAAAAGAAGGAT
TCTGAAATTTCTTTTCGAAAGTGATGAGGAAGGACTTTCTCGTGACGCAA
TTAAACAAAAAGCCTATCAAGGAAAGAAAAGCCTCGCCTGCCCAACATAA
CAAtgcaaaatacaccttttcgtcCGTAGCTGCCAATTGCTGCACGGgaa
ttttttgtccgttttaccaccctaaaattGTTCCAGTCCTTTTTTTGCAC
TTAAAGACAATAgacaaaagtgtaaaaaaggattggatcgataGTTGacg
gtggtaaattaaataataaagtagcacgcgcctgaccgcgcgattacggt
cgaaaaggtgtatagaaAGTAACTTTAATTTAATTTCTTATTTCAGAAGC
ACACTCACCATGTATTACGCCGAAAGATCAGCCGTTTGGATGCAAATGTC
TTACAAGGAGATCTAGTCTGTGAAATAGACAACACAGGGCGAACAGTACA
TTACTCATTGGCCAAAAAGGAGCAATGGAAAAAACCAAAagttgataaaa
acaaaatgcCGTATTTCTTTAAATATTATCCGGTGACAGGGAAGCCGGCG
ACTTTGGATGTGATCGCCAGGTTCTTATTCccctttgtttatttttgttt
taatgtgattttttggaaaacatacAGTTTGTAAAAGATTGACATTTCAA
TATTCTTCAATGTACTTCGACAAAGAGTTGTATTACAAATTCGAGCTGTA
TCAAAAGTTTGTCAATTTCGACGAATTGGAAAGGTAATCGAATTATGAAG
TGGAGGCGTTCAAAGCTGAGTATGCTAACGACATAAAGAAATTACTATGT
AAAACTGACAATAAAATCCATGCAGTTGGAAAGATAACATGAAAACACTA
ACATTCATAACACTTTAATATGGATAACATTATTTAGCTGGATTAGTAAA
GAAGTATACTTTAAATGACATCCcgcccttctcacagacccagtgagATT
TTTTCACCCAACGGGGGTAAAAATagcggaccaaaactcgatgggggttA
ATATTCCCATTTTGCTCatgactggggatttgaattccattgttttctac
caagaaaattcagtagggatggaaaaaatggcaCAAAAACTTGCAGTGAG
GACAAGAATGagagtaaaattttccacctGGGACAATGTTTTGACAAATT
GTTTTAAATGACATCCCAATTTTGCGTGTCACTGTTTGACAAGTTTACGA
TCTTTGTTCAAACACAGTAATCAAATATTGTTGTAAGACTGTAACACAAG
TTCAAGTTTAAGCGTGAAGGgaacaatccgtgccataatatatttgcact
tttggctaattaaccatttttcgaaaattgaagttcgagcgagaatgtca
atttttggcCCTcgacttgatttcatcgattattacgATCTAgcagggat
ttattggtttctaggctatatttcaagcgctactggaccatttttgaact
tttggatcctcagatcctaaggtgtTAAGTCtaaagtctcatgttaaaac
tcagagttaaaactctacccttacaacctactttagagcacttacaaatc
gattgtggtttcaaaacaccccggtgaatttcccttttgtgccaagtatt
ttgtcactgattgaaGAAAAATGTCTTTAAAGGAAAATAAAGCAACTTTT
TCACAACCCAAATACGCATGACCCGTGCGGTTTTCACACAAAAGTCGGAT
TGGAAGTAGACTCTATCCCtggatttcaaaatattctccCCTCTAAAATA
TAGAAAGCGCTAAATTCTATCCCTCGTCTCATAAAGCGGCGCAAATCTTA
AGGCGTCACTTTTCCTTGATTCGGAAAATATCGAATAAGATTCAGGTCTA
TccctttcgggctttaaactcaatggtcaaATATCAGAACAAAGCAATGT
TACTAGACTATGCGCTATAGTCTAGGACGAATtcgaataataaaaaaata
acctCAAACACGGAAATTAGCAGTCGGgcggaaattttgtccacgcgggC
GAAAATAGTTGGAGAGTCTCTATTTTCCGCCGCGCAATTTATTACGTTTT
ATACGCCGCGCAAtttattacgttttataatatacaactaTTTTATAtc

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002835	XLOC_002835	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000050	supercontig	sc0000050:470903..477751 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0619368	0.115398	0	0.265924	0.236501	0.0774812	0.180538	8.98744e-10	0	0.222481	0.15127	0.199993	0.421439	0.227354	0	0.16466	0	0.0119733	0	0	0	0	0	0	0.0988976	1.738e-10	0	0.176275	0.394447	0.486414

Blast

[Close]

BLAST of TCONS_00005002 vs. Swiss-Prot (Human)
Match: GBRR1 (Gamma-aminobutyric acid receptor subunit rho-1 OS=Homo sapiens GN=GABRR1 PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 1.688e-61
Identity = 138/417 (33.09%), Postives = 217/417 (52.04%), Query Frame = 3

Query:    3 NIRPNYTGKPIVVTVDLTVMAFGAINERGMTFATDLYFRQTWQDYRLQHKAGTVLTPLL-GRKIPTDFIWTPDTVISNSVKTRKHKVTTNNEKLDIYPNGTVFWGSRITVISKCKMDFRNYPMDIQSCSLVINSYAYLKEHLEYKWKQDKVSIQSEE---MAQYTVKSAYNLRRNANFSDLGTFSELVVTFTFARQISVTIIQLFFPATAIVSVSWVSLWIHKNCVSARVALCVTTMLTICAFWGSVNRQLPRVNYPKAVDYYFIVSFLFIMLTLVEFTIVLNFDFDSLKTKSVKKQSGKDTLKRENSLRNQLPKHTHHVLRRKISRLDANVLQGDLVCEIDN----TGR-----TVHYSLAKKEQWKKPKVDKNKMPYFFKYYPVTGKPATLDVIARFLFPFVYFCFNVIFWKTYS 1214
            ++RP + G  I V VD+ V +  +I+E  M F   LY R  W+D RL   +   L+    GR +    IW PD    +S ++  H  TT+N  L + P+G V +  R+TV + C MDF  +P+D Q+CSL I SYAY ++ L   WK+   S++++E   ++Q+ ++  +   + A +S  G ++ L + FT  R I   ++Q +FPAT +V +SWVS WI +  V ARV L +TT+LT+      VN  +PRV+Y KAVD Y  VSF+F+ L+++E+  V     + L T   +K         E  LR +LP  T  +   + + LD N   G+ V ++DN     G       V  +LA +    + K  ++       Y  +      +D  +R +FP  Y  FN+I+W  +S
Sbjct:   87 SMRPGFGGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFPSTNNLSMTFDGRLVKK--IWVPDMFFVHSKRSFIHDTTTDNVMLRVQPDGKVLYSLRVTVTAMCNMDFSRFPLDTQTCSLEIESYAYTEDDLMLYWKKGNDSLKTDERISLSQFLIQEFHTTTKLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAV-----NYLTTVQERK---------EQKLREKLP-CTSGLPPPRTAMLDGNYSDGE-VNDLDNYMPENGEKPDRMMVQLTLASERSSPQRKSQRS------SYVSMRIDTHAIDKYSRIIFPAAYILFNLIYWSIFS 479

The following BLAST results are available for this feature:

BLAST of TCONS_00005002 vs. Swiss-Prot (Human)

BLAST of TCONS_00005002 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GBRR1	1.688e-61	33.09	Gamma-aminobutyric acid receptor subunit rho-1 OS=...	[more]

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TCONS_00005002 (transcript) - C. hemisphaerica