TCONS_00004999 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004999
Unique NameTCONS_00004999
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length600

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004999 ID=TCONS_00004999|Name=TCONS_00004999|organism=Clytia hemisphaerica|type=transcript|length=600bp
AAAAGAACTGCAAAGTTTTAAATGATTCTTATTCTTCAGGAAAATTAACA
AACAAAATTCTATACACGAGTAAGAAACTAAATATTCACTTTTTATAAAC
ATTAATATTAACAACAACACTATTGGCTTCACCGGAGACATATTGTCCTT
CTTTGTCACCAGGTCCACAATTCATGGTAATTTGGCGAAACTTTTGTCCA
ATGGGTGCCTTGTTTGGGGTGGTTGGGCGCGTCTTAGGGGCGGTTGTTTC
TTTTGTAATTGTGATGTCAGTTGATGTCGTTGGTCGAGATGTCGTTGGTC
GAGATGTCGTTGCTCGAGATGTCTTTGGTCGAGAAGTCGTTACTGTATCG
GTCGATGTAGAAGAGGCAACATTGGTTGATAATGTCGGACGTGTCGATGT
GATTTTAGTTAATCGATTATCTGTGTTTGATGATGTTCCATCCTTTTTAA
TGACAAAGAATTCGAGTGGATCATCTGGGCCACGTACTGCAACTCCAGGG
TCGGCCAAATTGGCAAATCCGTCATTCGAATGGTCTTGTGCTGTCAACGT
TCTGGAGTAATCTTGAAGTACATCATTCAACACCTTTACTGTAAAAGGAA
Run BLAST on NCBI

transcript from alignment at sc0000050:461619..462458+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004999 ID=TCONS_00004999|Name=TCONS_00004999|organism=Clytia hemisphaerica|type=transcript|length=840bp|location=Sequence derived from alignment at sc0000050:461619..462458+ (Clytia hemisphaerica)
AAAAGAACTGCAAAGTTTTAAATGATTCTTATTCTTCAGGAAAATTAACA
AACAAAATTCTATACACGAGTAAGAAACTAAATATTCACTTTTTATAAAC
ATTAATATTAACAACAACACTATTGGCTTCACCGGAGACATATTGTCCTT
CTTTGTCACCAGGTCCACAATTCATGGTAATTTGGCGAAACTTTTGTCCA
ATGGGTGCCTTGTTTGGGGTGGTTGGGCGCGTCTTAGGGGCGGTTGTTTC
TTTTGTAATTGTGATGTCAGTTGATGTCGTTGGTCGAGATGTGGTTGGTC
GAGAAGTCGTTGTTTGAGAAGTCGTCGGTCGAGATGTTGTTGGCTGAGAT
GTTGTTGGCTGAGATGTCGTTGGTTGAGAGGTTGTTGGCTGAGATGTCGT
CGGTTGAGATGTCGTTGGTCGAGAGGTCGTTGGTCGAGAGGTCGTTGGTC
GAGAGGTCGTTGGTCGAGAGGTCGTTGGTCGAGATGTCGTTGGTCGAGAT
GTCGTTGGTCGAGATGTTGTCGATCGAGATATCGTAGATTGAGATATCGT
AGCTCGAGATGTCTTTGGTCGAGAAGTCGTTACTGTATCGGTCGATGTAG
AAGAGGCAACATTGGTTGATAATGTCGGACGTGTCGATGTGATTTTAGTT
AATCGATTATCTGTGTTTGATGATGTTCCATCCTTTTTAATGACAAAGAA
TTCGAGTGGATCATCTGGGCCACGTACTGCAACTCCAGGGTCGGCCAAAT
TGGCAAATCCGTCATTCGAATGGTCTTGTGCTGTCAACGTTCTGGAGTAA
TCTTGAAGTACATCATTCAACACCTTTACTGTAAAAGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002834XLOC_002834Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004999-exon-sc0000050-1491911889:461619..461908TCONS_00004999-exon-sc0000050-1491911889:461619..461908Clytia hemisphaericaexon
TCONS_00004999-exon-sc0000050-1510915933:461619..461908TCONS_00004999-exon-sc0000050-1510915933:461619..461908Clytia hemisphaericaexon
TCONS_00004999-exon-sc0000050-1575043694:461619..461908TCONS_00004999-exon-sc0000050-1575043694:461619..461908Clytia hemisphaericaexon
TCONS_00004999-exon-sc0000050-1491911889:462089..462110TCONS_00004999-exon-sc0000050-1491911889:462089..462110Clytia hemisphaericaexon
TCONS_00004999-exon-sc0000050-1510915933:462089..462110TCONS_00004999-exon-sc0000050-1510915933:462089..462110Clytia hemisphaericaexon
TCONS_00004999-exon-sc0000050-1575043694:462089..462110TCONS_00004999-exon-sc0000050-1575043694:462089..462110Clytia hemisphaericaexon
TCONS_00004999-exon-sc0000050-1491911889:462171..462458TCONS_00004999-exon-sc0000050-1491911889:462171..462458Clytia hemisphaericaexon
TCONS_00004999-exon-sc0000050-1510915933:462171..462458TCONS_00004999-exon-sc0000050-1510915933:462171..462458Clytia hemisphaericaexon
TCONS_00004999-exon-sc0000050-1575043694:462171..462458TCONS_00004999-exon-sc0000050-1575043694:462171..462458Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:461619..462458 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
231.274	226.715	147.326	104.785	4.43908	4.34623	0.716531	2.43398	0.196753	1.06519	0	0	0	0	0	0	0.613036	0	0.371383	0.0179761	0	0	39.9932	32.0293	1.36387	0.256328	1.93917	2.77014	17.7386	20.0427
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004999 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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