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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004998 ID=TCONS_00004998|Name=TCONS_00004998|organism=Clytia hemisphaerica|type=transcript|length=4514bpRun BLAST on NCBI protein sequence of TCONS_00004998-protein >TCONS_00004998-protein ID=TCONS_00004998-protein|Name=TCONS_00004998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=730bp MRSLFLNTLFCIIYYCSCYDTPETGTRPQEPILDIELGQFVSKNDQITTVRun BLAST on NCBI transcript from alignment at sc0000050:426851..459799+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004998 ID=TCONS_00004998|Name=TCONS_00004998|organism=Clytia hemisphaerica|type=transcript|length=32949bp|location=Sequence derived from alignment at sc0000050:426851..459799+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000050:426851..459799+ >TCONS_00004998 ID=TCONS_00004998|Name=TCONS_00004998|organism=Clytia hemisphaerica|type=CDS|length=19737bp|location=Sequence derived from alignment at sc0000050:426851..459799+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00004998 vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1) HSP 1 Score: 738.413 bits (1905), Expect = 0.000e+0 Identity = 385/437 (88.10%), Postives = 414/437 (94.74%), Query Frame = 2
Query: 2465 MRECISIHLGQAGIQMGNACWELYCLEHGLQPDGTMSEGEGAGKADDSFSTFFSETGTGKHVPRAIFCDLEPTVVDEIRTGTYRTLFHPEQLISDKEDAANNYARGHYTIGKQVXXXXXXXXXXXADQCTXXXXXXXXXXXXXXXXXXXXXXXMERISIEYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXDCTFMVDNEAIYDICRRNLDIDRPTYSNLNRLIGQIVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPMATYAPVISAEKAYHEQNTVSEITNKCFDPENQMVKCDPRHGKYMACCLLYRGDVIPKDVNAAIAHVKTKRTIQFVDWCPTGFKIGINYQPPTAVPGGDLAKVPRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA 3775
MRECISIH+GQAG+Q+GNACWELYCLEHG+QPDG M + G DDSF+TFFSETG GKHVPRA+F DLEPTV+DE+RTGTYR LFHPEQLI+ KEDAANNYARGHYTIGK++ID +LDRIR LADQCTGLQGFL+FHSFGGGTGSGFTSLLMER+S++YGKKSKLEF+IYPAPQVSTAVVEPYNSILTTHTTLEH+DC FMVDNEAIYDICRRNLDI+RPTY+NLNRLI QIVSSITASLRFDGALNVDL EFQTNLVPYPRIHFP+ATYAPVISAEKAYHEQ TV+EITN CF+P NQMVKCDPRHGKYMACCLLYRGDV+PKDVNAAIA +KTKRTIQFVDWCPTGFK+GINYQPPT VPGGDLAKV RAVCMLSNTTA+AEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVGA
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGA 437 The following BLAST results are available for this feature:
BLAST of TCONS_00004998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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