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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004996 ID=TCONS_00004996|Name=TCONS_00004996|organism=Clytia hemisphaerica|type=transcript|length=1541bp
CGGCACGGAAAGAGGTAATTAATACAAGGATCAACATTCATGCCAGctct
tttgttgtttgtttttaattgaTCTcataaataatcaaaaatattcCCAG
AGGCGCCAGAAGGATTagcaaaaaatatatatctcaATGACCTTTTTAAC
AATGATCACCACCCCTTGAGAATTTCGATCAACTATAAATTAAGTTAGAA
ACTCCCTCAGTTCAAACAGTCATTGGAGAAGTAACACACAGTCAAGTCTA
CATTGCTTTCGTCAAGatGTTTAAGCTGCTACTAATCACACTGGTGGCTA
TTATCCATAACTCGTCAGCATGCACTGAATTCATCGTTGAAGTTAAAGGC
AACAAGGGAAATGTAGTCGGTCGAACCATGGAATTTGCACAAAACTTCCC
TTTTAATGTTATTTCCCAACCCGCAGGTGAAGTATATACAGGTGATGTTA
CACCTGGATGTAAGGGTAAAACACCACTTTCATGGACTGGAAAATACAAA
TCTGCATATCTTGCCAGTGCAACACGCCTTATTGAAGATGCTGACAAACT
TTGGTTGGATGGACAAAATTCTGCTGGTTTGTCTGTTGGCGCTTTGTATT
TTGATGGTTATGCGCAATATCCTTCTGAACTTGTTGGTGATGAATGTACT
AATGGAATTTCACATATTCAAATGATCAAATACATTTTGAGTGTCTATGG
TAGCACTAACGAAGTACGTGAAGCACTAAGCAATGGTACTTTCCCAGCAG
TCTGGGGTCGAGAATTGAAAGTAGGATTCATCCGAATTGGACTTACACAA
AACTACATATTCCCAATCCATTGGAGTATTGTTGACAACTCGGGCGATGC
TATTGTGTTGGAATACACGAAAGATGGACGGCAAGTGTACGAAAACCAAG
TTGGTGTGTTCACCAATAACCCAACTTATGACTGGCATACGACCAATTTG
AACAGCTATATTAACATCCAGAGGGATTCTTTCGAACCCAAAACATGGAA
ACGAGCCGGAACTGAATACACCATCAAATCTTTTGGCCACGGAAGTGGGT
TCCTTGGGTTACCGGGTGATTTCACACCACCAAGCAGATTCATCAGAACC
GCCGCTATGGTTAGATTCTCGGgaaATGCTAAAAACGCCCAAGACGCTGC
ACTGAAAGCATGGCATATCATAAACTCCGTAGATATTCCAAAACACGCTG
TCGACGACTTCACAAACTGGGCTGTGGTCAAAGATCTCAAAAACAACGTC
ATGTATTTCCGAGGTGTCAATTATATCAGTATCCGTCAAATCGATTTGAA
TAAAACATCAAACACTGAGGCCGAGTATGTCAAATTGAATGGGAAGTTTG
AAGATTGTGTCCAGGATGTCACTTCGCAAATGAAATCTTATGATGCAAAT
ATCAAGGAAGAATTGCCAGCTGAACCACGAGATGAACTTTAGAATTTTTG
TTAGAACTGATTTTATAATTACTGTACTTttaattttcgttatttttgat
ttttttcgcaACTAAAACACGAATAGATGAATGAACAACAT Run BLAST on NCBI protein sequence of TCONS_00004996-protein >TCONS_00004996-protein ID=TCONS_00004996-protein|Name=TCONS_00004996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp
MFKLLLITLVAIIHNSSACTEFIVEVKGNKGNVVGRTMEFAQNFPFNVIS
QPAGEVYTGDVTPGCKGKTPLSWTGKYKSAYLASATRLIEDADKLWLDGQ
NSAGLSVGALYFDGYAQYPSELVGDECTNGISHIQMIKYILSVYGSTNEV
REALSNGTFPAVWGRELKVGFIRIGLTQNYIFPIHWSIVDNSGDAIVLEY
TKDGRQVYENQVGVFTNNPTYDWHTTNLNSYINIQRDSFEPKTWKRAGTE
YTIKSFGHGSGFLGLPGDFTPPSRFIRTAAMVRFSGNAKNAQDAALKAWH
IINSVDIPKHAVDDFTNWAVVKDLKNNVMYFRGVNYISIRQIDLNKTSNT
EAEYVKLNGKFEDCVQDVTSQMKSYDANIKEELPAEPRDEL Run BLAST on NCBI transcript from alignment at sc0000050:326564..328892+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004996 ID=TCONS_00004996|Name=TCONS_00004996|organism=Clytia hemisphaerica|type=transcript|length=2329bp|location=Sequence derived from alignment at sc0000050:326564..328892+ (Clytia hemisphaerica)
CGGCACGGAAAGAGGTAATTAATACAAGGATCAACATTCATGCCAGctct
tttgttgtttgtttttaattgaTCTcataaataatcaaaaatattcCCAG
AGGCGCCAGAAGGATTagcaaaaaatatatatctcaATGACCTTTTTAAC
AATGATCACCACCCCTTGAGAATTTCGATCAACTATAAATTAAGTTAGAA
ACTCCCTCAGTTCAAACAGTCATTGGAGAAGTAACACACAGTCAAGTCTA
CATTGCTTTCGTCAAGGTATGCTGTAAATTTTTCAACATaagtaaatttg
tttttttttcctcaCTTTCCAAAATTGGGATCTTTCTTACTTTTGACTGC
ATTTGATCCAATTTTTATTAGTCTGCTGTACTAactttattcatttttca
tcttcagatGTTTAAGCTGCTACTAATCACACTGGTGGCTATTATCCATA
ACTCGTCAGCATGCACTGAATTCATCGTTGAAGTTAAAGGCAACAAGGGA
AATGTAGTCGGTCGAACCATGGAATTTGCACAAAACTTCCCTTTTAATGT
TATTTCCCAACCCGCAGGTGAAGTATATACAGGTGATGTTACACCTGGAT
GTAAGGGTAAAACACCACTTTCATGGACTGGAAAATACAAATCTGCATAT
CTTGCCAGTGCAACACGCCTTATTGAAGATGCTGACAAACTTTGGTTGGA
TGGACAAAATTCTGCTGGTTTGTCTGTTGGCGCTTTGTATTTTGATGGTT
ATGCGCAATATCCTTCTGAACTTGTTGGTGATGAATGTACTAATGGAATT
TCACATATTCAAATGATCAAATACATTTTGAGTAAGATTATTTTTTCTAC
TCCCCTCCTCCTGCAAGTCCTGCAAGCCTTTCCTCATAGACCCAAACACA
CCTGAGCTCGAAGTTGAGGgaaaataataaaagttttgttCTCATCACTC
CAGATAAGTGGCTTGTGATAGATACTAGGCATTAAGGTTAAGTTTTTTTC
AGGCTTTCCAAAGTGCACTGTATGGGtgtaaaaagtagaaaatagaaaat
cgaggagaatttcatttttgttaaaaatgaacAAACTCAAACAACGGCAT
ACAGTGCAACGACATATTTTTTCTATGCCCTCATTGCATGAAAAGGGGAG
AGTTATTTAGAAAACTGTATGCTTTTGGGCTGAAAATTTATGATAAAGAG
AATCATTTTTCAGGTGTCTATGGTAGCACTAACGAAGTACGTGAAGCACT
AAGCAATGGTACTTTCCCAGCAGTCTGGGGTCGAGAATTGAAAGTAGGAT
TCATCCGAATTGGACTTACACAAAACTACATATTCCCAATCCATTGGAGT
ATTGTTGACAACTCGGGCGATGCTATTGTGTTGGAATACACGAAAGATGG
ACGGCAAGTGTACGAAAACCAAGTTGGTGTGTTCACCAATAACCCAACTT
ATGACTGGCATACGACCAATTTGAACAGCTATATTAACATCCAGAGGGAT
TCTTTCGAACCCAAAACATGGAAACGAGCCGGAACTGAATACACCATCAA
ATCTTTTGGCCACGGAAGTGGGTTCCTTGGGTTACCGGGTGATTTCACAC
CACCAAGCAGATTCATCAGAACCGCCGCTATGGTTAGATTCTCGGGTGAG
CTTTATTGATTTGTCattgatttgttttcttttggGTATTtaggaaatat
cttttggataacaaaaaaagactaaatcttttttattaGTGCATCTTTAA
TCGGAAGTCTATGTCATTTAAACATTCTCAACAAGATTCGATTTTACCAA
TACACTGTTTGAGAAATCATTAAAAATTGTCCCGGCGTGTGCTACGTCTG
TTAGTTTGAAAGTCGTACGATTGATCATTGTCTtcattatttatattttt
gtttttttaggaaATGCTAAAAACGCCCAAGACGCTGCACTGAAAGCATG
GCATATCATAAACTCCGTAGATATTCCAAAACACGCTGTCGACGACTTCA
CAAACTGGGCTGTGGTCAAAGATCTCAAAAACAACGTCATGTATTTCCGA
GGTGTCAATTATATCAGTATCCGTCAAATCGATTTGAATAAAACATCAAA
CACTGAGGCCGAGTATGTCAAATTGAATGGGAAGTTTGAAGATTGTGTCC
AGGATGTCACTTCGCAAATGAAATCTTATGATGCAAATATCAAGGAAGAA
TTGCCAGCTGAACCACGAGATGAACTTTAGAATTTTTGTTAGAACTGATT
TTATAATTACTGTACTTttaattttcgttatttttgatttttttcgcaAC
TAAAACACGAATAGATGAATGAACAACAT Coding sequence (CDS) from alignment at sc0000050:326564..328892+ >TCONS_00004996 ID=TCONS_00004996|Name=TCONS_00004996|organism=Clytia hemisphaerica|type=CDS|length=3528bp|location=Sequence derived from alignment at sc0000050:326564..328892+ (Clytia hemisphaerica)
atGTTTAAGCTGCTACTAATCACACTGGTGGCTATTATCCATAACTCGTC
AGCATGCACTGAATTCATCGTTGAAGTTAAAGGCAACAAGGGAAATGTAG
TCGGTCGAACCATGGAATTTGCACAAAACTTCCCTTTTAATGTTATTTCC
CAACCCGCAGGTGAAGTATATACAGGTGATGTTACACCTGGATGTAAGGG
TAAAACACCACTTTCATGGACTGGAAAATACAAATCTGCATATCTTGCCA
GTGCAACACGCCTTATTGAAGATGCTGACAAACTTTGGTTGGATGGACAA
AATTCTGCTGGTTTGTCTGTTGGCGCTTTGTATTTTGATGGTTATGCGCA
ATATCCTTCTGAACTTGTTGGTGATGAATGTACTAATGGAATTTCACATA
TTCAAATGATCAAATACATTTTGAGTGTCTATGGTAGCACTAACGAAGTA
CGTGAAGCACTAAGCAATGGTACTTTCCCAGCAGTCTGGGGTCGAGAATT
GAAAGTAGGATTCATCCGAATTGGACTTACACAAAACTACATATTCCCAA
TCCATTGGAGTATTGTTGACAACTCGGGCGATGCTATTGTGTTGGAATAC
ACGAAAGATGGACGGCAAGTGTACGAAAACCAAGTTGGTGTGTTCACCAA
TAACCCAACTTATGACTGGCATACGACCAATTTGAACAGCTATATTAACA
TCCAGAGGGATTCTTTCGAACCCAAAACATGGAAACGAGCCGGAACTGAA
TACACCATCAAATCTTTTGGCCACGGAAGTGGGTTCCTTGGGTTACCGGG
TGATTTCACACCACCAAGCAGATTCATCAGAACCGCCGCTATGGTTAGAT
TCTCGGgaaATGCTAAAAACGCCCAAGACGCTGCACTGAAAGCATGGCAT
ATCATAAACTCCGTAGATATTCCAAAACACGCTGTCGACGACTTCACAAA
CTGGGCTGTGGTCAAAGATCTCAAAAACAACGTCATGTATTTCCGAGGTG
TCAATTATATCAGTATCCGTCAAATCGATTTGAATAAAACATCAAACACT
GAGGCCGAGTATGTCAAATTGAATGGGAAGTTTGAAGATTGTGTCCAGGA
TGTCACTTCGCAAATGAAATCTTATGATGCAAATATCAAGGAAGAATTGC
CAGCTGAACCACGAGATGAACTTTAGatGTTTAAGCTGCTACTAATCACA
CTGGTGGCTATTATCCATAACTCGTCAGCATGCACTGAATTCATCGTTGA
AGTTAAAGGCAACAAGGGAAATGTAGTCGGTCGAACCATGGAATTTGCAC
AAAACTTCCCTTTTAATGTTATTTCCCAACCCGCAGGTGAAGTATATACA
GGTGATGTTACACCTGGATGTAAGGGTAAAACACCACTTTCATGGACTGG
AAAATACAAATCTGCATATCTTGCCAGTGCAACACGCCTTATTGAAGATG
CTGACAAACTTTGGTTGGATGGACAAAATTCTGCTGGTTTGTCTGTTGGC
GCTTTGTATTTTGATGGTTATGCGCAATATCCTTCTGAACTTGTTGGTGA
TGAATGTACTAATGGAATTTCACATATTCAAATGATCAAATACATTTTGA
GTGTCTATGGTAGCACTAACGAAGTACGTGAAGCACTAAGCAATGGTACT
TTCCCAGCAGTCTGGGGTCGAGAATTGAAAGTAGGATTCATCCGAATTGG
ACTTACACAAAACTACATATTCCCAATCCATTGGAGTATTGTTGACAACT
CGGGCGATGCTATTGTGTTGGAATACACGAAAGATGGACGGCAAGTGTAC
GAAAACCAAGTTGGTGTGTTCACCAATAACCCAACTTATGACTGGCATAC
GACCAATTTGAACAGCTATATTAACATCCAGAGGGATTCTTTCGAACCCA
AAACATGGAAACGAGCCGGAACTGAATACACCATCAAATCTTTTGGCCAC
GGAAGTGGGTTCCTTGGGTTACCGGGTGATTTCACACCACCAAGCAGATT
CATCAGAACCGCCGCTATGGTTAGATTCTCGGgaaATGCTAAAAACGCCC
AAGACGCTGCACTGAAAGCATGGCATATCATAAACTCCGTAGATATTCCA
AAACACGCTGTCGACGACTTCACAAACTGGGCTGTGGTCAAAGATCTCAA
AAACAACGTCATGTATTTCCGAGGTGTCAATTATATCAGTATCCGTCAAA
TCGATTTGAATAAAACATCAAACACTGAGGCCGAGTATGTCAAATTGAAT
GGGAAGTTTGAAGATTGTGTCCAGGATGTCACTTCGCAAATGAAATCTTA
TGATGCAAATATCAAGGAAGAATTGCCAGCTGAACCACGAGATGAACTTT
AGatGTTTAAGCTGCTACTAATCACACTGGTGGCTATTATCCATAACTCG
TCAGCATGCACTGAATTCATCGTTGAAGTTAAAGGCAACAAGGGAAATGT
AGTCGGTCGAACCATGGAATTTGCACAAAACTTCCCTTTTAATGTTATTT
CCCAACCCGCAGGTGAAGTATATACAGGTGATGTTACACCTGGATGTAAG
GGTAAAACACCACTTTCATGGACTGGAAAATACAAATCTGCATATCTTGC
CAGTGCAACACGCCTTATTGAAGATGCTGACAAACTTTGGTTGGATGGAC
AAAATTCTGCTGGTTTGTCTGTTGGCGCTTTGTATTTTGATGGTTATGCG
CAATATCCTTCTGAACTTGTTGGTGATGAATGTACTAATGGAATTTCACA
TATTCAAATGATCAAATACATTTTGAGTGTCTATGGTAGCACTAACGAAG
TACGTGAAGCACTAAGCAATGGTACTTTCCCAGCAGTCTGGGGTCGAGAA
TTGAAAGTAGGATTCATCCGAATTGGACTTACACAAAACTACATATTCCC
AATCCATTGGAGTATTGTTGACAACTCGGGCGATGCTATTGTGTTGGAAT
ACACGAAAGATGGACGGCAAGTGTACGAAAACCAAGTTGGTGTGTTCACC
AATAACCCAACTTATGACTGGCATACGACCAATTTGAACAGCTATATTAA
CATCCAGAGGGATTCTTTCGAACCCAAAACATGGAAACGAGCCGGAACTG
AATACACCATCAAATCTTTTGGCCACGGAAGTGGGTTCCTTGGGTTACCG
GGTGATTTCACACCACCAAGCAGATTCATCAGAACCGCCGCTATGGTTAG
ATTCTCGGgaaATGCTAAAAACGCCCAAGACGCTGCACTGAAAGCATGGC
ATATCATAAACTCCGTAGATATTCCAAAACACGCTGTCGACGACTTCACA
AACTGGGCTGTGGTCAAAGATCTCAAAAACAACGTCATGTATTTCCGAGG
TGTCAATTATATCAGTATCCGTCAAATCGATTTGAATAAAACATCAAACA
CTGAGGCCGAGTATGTCAAATTGAATGGGAAGTTTGAAGATTGTGTCCAG
GATGTCACTTCGCAAATGAAATCTTATGATGCAAATATCAAGGAAGAATT
GCCAGCTGAACCACGAGATGAACTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004996-exon-sc0000050-1491911889:326564..326829 | TCONS_00004996-exon-sc0000050-1491911889:326564..326829 | Clytia hemisphaerica | exon |
| TCONS_00004996-exon-sc0000050-1510915933:326564..326829 | TCONS_00004996-exon-sc0000050-1510915933:326564..326829 | Clytia hemisphaerica | exon |
| TCONS_00004996-exon-sc0000050-1575043694:326564..326829 | TCONS_00004996-exon-sc0000050-1575043694:326564..326829 | Clytia hemisphaerica | exon |
| TCONS_00004996-exon-sc0000050-1491911889:326971..327394 | TCONS_00004996-exon-sc0000050-1491911889:326971..327394 | Clytia hemisphaerica | exon |
| TCONS_00004996-exon-sc0000050-1510915933:326971..327394 | TCONS_00004996-exon-sc0000050-1510915933:326971..327394 | Clytia hemisphaerica | exon |
| TCONS_00004996-exon-sc0000050-1575043694:326971..327394 | TCONS_00004996-exon-sc0000050-1575043694:326971..327394 | Clytia hemisphaerica | exon |
| TCONS_00004996-exon-sc0000050-1491911889:327777..328208 | TCONS_00004996-exon-sc0000050-1491911889:327777..328208 | Clytia hemisphaerica | exon |
| TCONS_00004996-exon-sc0000050-1510915933:327777..328208 | TCONS_00004996-exon-sc0000050-1510915933:327777..328208 | Clytia hemisphaerica | exon |
| TCONS_00004996-exon-sc0000050-1575043694:327777..328208 | TCONS_00004996-exon-sc0000050-1575043694:327777..328208 | Clytia hemisphaerica | exon |
| TCONS_00004996-exon-sc0000050-1491911889:328474..328892 | TCONS_00004996-exon-sc0000050-1491911889:328474..328892 | Clytia hemisphaerica | exon |
| TCONS_00004996-exon-sc0000050-1510915933:328474..328892 | TCONS_00004996-exon-sc0000050-1510915933:328474..328892 | Clytia hemisphaerica | exon |
| TCONS_00004996-exon-sc0000050-1575043694:328474..328892 | TCONS_00004996-exon-sc0000050-1575043694:328474..328892 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:326564..328892 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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