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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004995 ID=TCONS_00004995|Name=TCONS_00004995|organism=Clytia hemisphaerica|type=transcript|length=1997bp
GAGAAAtgtttcaaaataattgttttggCTGCCATCTTCTTTTGGAACAG
TCCGCAATGGACCCAGATGACTAACTAAAGCTTTGGTAATGGGCTGtagg
aaagaaaacaaaatgcTTTCTTTTAGCATATTTTGCTTCTTTAAGCTTTT
CTAGNTTCGATAGAAAGATTGTGGTATGTTTATCGGAGTATCTACAGAAt
aaaagtaaaaatattaataaaagaAATACACTAACAACAACAAATCTAAG
ATGATTCGGGGTAGTTTGATCATCCTCAGCCTCGTCCATCTCTATCTTTG
TGATTTCACCCTTGTTGGCATGATCAAATTCAAAGATGGAGACTTACCAG
AAAAAGTCCCGGATAACTCATGGTTGACTGTTAAAGTTGAAGACACAAGC
ATTATGGATGTTGCCAGTGTTTCGTTGGGTAGAATCACGGTACCTGTTCA
AAATTATACCAAATCAAACGAAGGTATTAAATTTCGTGTGGAGAATATCA
AGTATGCTAAAGTCCCTGAGATCTCTGTATCCGCTGTCCTCAATATGGGT
TGGAAGCCAAATGGTGATAAATGGCTTCAGAAAGGCGATTATTTATCCGA
CATCACTCACCGACTCGACGACATTGAAGATAAATCTACTGTCACAAAAG
ACGTCGAAGTCCGTAAATACGGCGACTGACTAGACAACAGTGTATTTGTT
GCCCGGTGGAACGCCCAATATGACGACCAATCTGACTCGGATAGTGTGAT
ACTGACTACGCCTTTATTCTTGAtgatattttgcattttttctattttct
cattattttaaattatttaaatCGAGACTTTATTTAATGAGGGCAATTTT
ACTTTAtttatattaaattttatttaagGGTTTTATAAAAACTCAGTAGT
GATataaaatgggcttttccagaaaaaaattaaatatgggAGAtgggagg
atataacattttttggacaaagcaaattttgtagatttttcactaccccc
ggacactatatcctatAATATGCATCGAAGCAAAAGTGTCCAGGATTGGT
ATAAATGGTCCATTACTCCGATAtggttttgaaataaaattgtttttgat
gCCTGGTACATTAAAATCTTCATTGTGACAGGAATGAAATTGTACCCTTT
TGAATGCTTCGTTAAAGATGGGCAAAATGACTAAATactttaagagaaga
aattttgacgaaTAGTTCATTGGGAATGTGCCAATTCACTGGGGGATTTA
AGACAACAGAGCACAAGTACGTCGGTAACATGCGAAatagtgcaacgctc
gttaaaagacaatgaaatttgGTTAATGACCAAAAAGTTTCCGTTTTGAT
GGAAGTAAAAAAATCGCTAAAACTTCTTCTCGCCAAAATATCTTCCCTTA
AGGCAACTAGAATTTAGTCTGCAAGCAATCAAGATCCCATACTTTCATTA
ACattgtcattatttttatttggtaAGATTTCCATTTTTTGTAAANGAAT
TCGCTAAAACTTTTTCTCGCCAAAATATCTTCCCTTAAGGCAACTAGAAT
TTAGTCTGCAAGCAATCAAGATCCCATACTTTCATTAACattgtcattat
ttttatttggtaagatttccattttttgtaaaagtaatAAACCTTTGTAA
TAATCTACCCTATAAGTATAATAAATAATCACACACCTGTATACACAGGC
TTCTTTGAGAATTGGGTCGTTCCATTAGATTTCCATACATGGGGACCTTT
TCTAGTCAAAAACAattcttggaaatgtgtggataccccctggaaaatag
gaacatttgcaaaaaacgcttggaaaatttcttttcataccATAAAGAGA
ctgtggacgaactaaaattagttttttactcattggaaattttaaattat
ctttttaccccttgaaaaatgaaaaaaaaaacaatcttttacatcttctg
aaaattctgCCCGagtaaccccctggaaatgttcgtccaccccctgt Run BLAST on NCBI transcript from alignment at sc0000050:313610..317379+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004995 ID=TCONS_00004995|Name=TCONS_00004995|organism=Clytia hemisphaerica|type=transcript|length=3770bp|location=Sequence derived from alignment at sc0000050:313610..317379+ (Clytia hemisphaerica)
GAGAAAtgtttcaaaataattgttttggCTGCCATCTTCTTTTGGAACAG
TCCGCAATGGACCCAGATGACTAACTAAAGCTTTGGTAATGGGCTGtagg
aaagaaaacaaaatgcTTTCTTTTAGCATATTTTGCTTCTTTAAGCTTTT
CTAGNTTCGATAGAAAGATTGTGGTATGTTTATCGGAGTATCTACAGAAG
TATGTCATCTTTCTgatctgttttctttttcatgacATTTTTACTtctca
tcattttcgatttcctCCTTTATCTATTTTCTTGTTTCTGAGCTCATGAT
ACCATAGTTTTTTGTAAGGCTTTGTAATTCTAATTTATAATAACTATTTG
TGCTGATTTGTGAAAAAGTATTTACTATATTTGTTCTCATATAACATTAT
CTtgataatgggcttttccagaataaaatcgtgcaccccctgttgaggag
gttcatttccgttccaagggggtaaggtttatAATGCAGttgaattccat
aagggtagacgaaaatccgtcaaaaataagcagaattccaagggggtaat
gattgaaaattggTAATAATTctgaattccagaggggtacgatcctaaaa
ttgcctggaattccaagggggtaggttacaaaaggttggacctcctcaac
agggggtgcatgtttttttttctggaaaagcccaatcttcAAGGTGAATA
TTGTTGAGAATGTGTTCGGTCAGTTTTCCAGTTTTGGCTTAAATATTCAT
CATGATTTGATTTCGTTAtagtaaaagtaaaaatattaataaaagaAATA
CACTAACAACAACAAATCTAAGATGATTCGGGGTAGTTTGATCATCCTCA
GCCTCGTCCATCTCTATCTTTGTGATTTCACCCTTGTTGGCATGATCAAA
TTCAAAGATGGAGACTTACCAGAAAAAGTCCCGGATAACTCATGGTTGAC
TGTTAAAGTTGAAGACACAAGCATTATGGATGTTGCCAGTGTTTCGTTGG
GTAGAATCACGGTACCTGTTCAAAATTATACCAAATCAAACGAAGGTATT
AAATTTCGTGTGGAGAATATCAAGTATGCTAAAGTCCCTGAGATCTCTGT
AAGTAGTGTTTTAATGCTTGTTGCTTTTTCttgttattttacttttttcg
aATTCTTAAGGGCCATTAGTAGTATAgtatgagaaaaaaatattagtcAT
CCTTCTTGGAAAATCATTTTATTTCAACCTGGCAAAAGGGAATATGTCTG
TTTTGTCATCCAAACCCTTGAGAAAAAATGACTTTTCGGAATACCCCCTT
GAAATGTTCGTCTACCCCCTGTATGTATATAAAATGGACCCAACATACAT
ATAAAAAGTCACGTTGGACTTAGGCTGGCCGTAGAGGAAAGTCTGGGTCA
GTCTGTAATAAACTTTTGTTTGATCGTCCTCGACTCGGGCACAAAATAAC
ACTGGTGGGCcataaaagaaaaatctttttgattgactttttttcgaata
aaaattgccttaaaagttgaaaatattcctCAAATCCTATAAAGACTACT
GCTCTTCAACAAAAAGaccgaaaatttgatatttatcaCGAATTCGAGGT
TTAATAGATTTcctattttttgagaattcttcgccagcataaactttcac
gaatttacctgttaagaattttcaaagacatttagtttcgcgaaaatggc
gaaagtttctgctcgccaAAGTTTGTAGACCTAAAgtaccccctgaaaat
gttcCACCCAGTATcgatataaaatgaaatggccCAATACCTTTTCTTAA
GATTAACAGAAAATTACCATATTTCTTTACGAATcttcaattttgatttg
ttaAATTTCATTTGTCAGAAAGATCTTAGAATTTTAACCCCTTTTAATAA
AGcgaaattttgttattttcactGTATACAGAGCAATGACAAAAAAGTTT
ATATGAAGTTTCTCTTCAAAGGATGACAagaatatttccttaaaaagtac
aaagaaattttccccaaaaagtgaACAGATAAAAGTTTTCCTTAAAAGAC
CTTAAAACATTATTTCCTTCAGAGGATGTAAAAGTTGctctttcaaaaga
ttttcaaaagcaCGTGTTAAGAACAAGAAAATTCCTCAAAAATTTCGAAG
AGTTTTCTCTCATAACGTCTAATCACGAGAAACTTTTTCTCCAAAAGAAT
GGACAACGAAGTTTTCCTTAACAAATACAAAAGtgtttccttcaaaaata
cgaagagttttcctttaaaaatacatacaAGTATATTTTCCCTCCTTAGG
TATCCGCTGTCCTCAATATGGGTTGGAAGCCAAATGGTGATAAATGGCTT
CAGAAAGGCGATTATTTATCCGACATCACTCACCGACTCGACGACATTGA
AGATAAATCTACTGTCACAAAAGACGTCGAAGTCCGTAAATACGGCGACT
GACTAGACAACAGTGTATTTGTTGCCCGGTGGAACGCCCAATATGACGAC
CAATCTGACTCGGATAGTGTGATACTGACTACGCCTTTATTCTTGAtgat
attttgcattttttctattttctcattattttaaattatttaaatCGAGA
CTTTATTTAATGAGGGCAATTTTACTTTAtttatattaaattttatttaa
gGGTTTTATAAAAACTCAGTAGTGATataaaatgggcttttccagaaaaa
aattaaatatgggAGAtgggaggatataacattttttggacaaagcaaat
tttgtagatttttcactacccccggacactatatcctatAATATGCATCG
AAGCAAAAGTGTCCAGGATTGGTATAAATGGTCCATTACTCCGATAtggt
tttgaaataaaattgtttttgatgCCTGGTACATTAAAATCTTCATTGTG
ACAGGAATGAAATTGTACCCTTTTGAATGCTTCGTTAAAGATGGGCAAAA
TGACTAAATactttaagagaagaaattttgacgaaTAGTTCATTGGGAAT
GTGCCAATTCACTGGGGGATTTAAGACAACAGAGCACAAGTACGTCGGTA
ACATGCGAAatagtgcaacgctcgttaaaagacaatgaaatttgGTTAAT
GACCAAAAAGTTTCCGTTTTGATGGAAGTAAAAAAATCGCTAAAACTTCT
TCTCGCCAAAATATCTTCCCTTAAGGCAACTAGAATTTAGTCTGCAAGCA
ATCAAGATCCCATACTTTCATTAACattgtcattatttttatttggtaAG
ATTTCCATTTTTTGTAAANGAATTCGCTAAAACTTTTTCTCGCCAAAATA
TCTTCCCTTAAGGCAACTAGAATTTAGTCTGCAAGCAATCAAGATCCCAT
ACTTTCATTAACattgtcattatttttatttggtaagatttccatttttt
gtaaaagtaatAAACCTTTGTAATAATCTACCCTATAAGTATAATAAATA
ATCACACACCTGTATACACAGGCTTCTTTGAGAATTGGGTCGTTCCATTA
GATTTCCATACATGGGGACCTTTTCTAGTCAAAAACAattcttggaaatg
tgtggataccccctggaaaataggaacatttgcaaaaaacgcttggaaaa
tttcttttcataccATAAAGAGActgtggacgaactaaaattagtttttt
actcattggaaattttaaattatctttttaccccttgaaaaatgaaaaaa
aaaacaatcttttacatcttctgaaaattctgCCCGagtaaccccctgga
aatgttcgtccaccccctgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004995-exon-sc0000050-1491911889:313610..313808 | TCONS_00004995-exon-sc0000050-1491911889:313610..313808 | Clytia hemisphaerica | exon |
| TCONS_00004995-exon-sc0000050-1510915933:313610..313808 | TCONS_00004995-exon-sc0000050-1510915933:313610..313808 | Clytia hemisphaerica | exon |
| TCONS_00004995-exon-sc0000050-1575043694:313610..313808 | TCONS_00004995-exon-sc0000050-1575043694:313610..313808 | Clytia hemisphaerica | exon |
| TCONS_00004995-exon-sc0000050-1491911889:314381..314707 | TCONS_00004995-exon-sc0000050-1491911889:314381..314707 | Clytia hemisphaerica | exon |
| TCONS_00004995-exon-sc0000050-1510915933:314381..314707 | TCONS_00004995-exon-sc0000050-1510915933:314381..314707 | Clytia hemisphaerica | exon |
| TCONS_00004995-exon-sc0000050-1575043694:314381..314707 | TCONS_00004995-exon-sc0000050-1575043694:314381..314707 | Clytia hemisphaerica | exon |
| TCONS_00004995-exon-sc0000050-1491911889:315909..317379 | TCONS_00004995-exon-sc0000050-1491911889:315909..317379 | Clytia hemisphaerica | exon |
| TCONS_00004995-exon-sc0000050-1510915933:315909..317379 | TCONS_00004995-exon-sc0000050-1510915933:315909..317379 | Clytia hemisphaerica | exon |
| TCONS_00004995-exon-sc0000050-1575043694:315909..317379 | TCONS_00004995-exon-sc0000050-1575043694:315909..317379 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:313610..317379 + |
Blast
The following BLAST results are available for this feature:
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