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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004994 ID=TCONS_00004994|Name=TCONS_00004994|organism=Clytia hemisphaerica|type=transcript|length=2755bp
cgaaaatttgtaacacgcgaaaatatataccaataataATTCAAATAGGA
ATacgttaaaaaaaaactttaataattTAGTCActatttaaaagaacaaa
ttatataccaTGCTTTCCACAAagatataaaatcaaaacaattattTGCA
CACAAGGAATCTTTGAATAGGCCTTTGCAGTGAATCGAAATGATAAtggt
tttcttttgaatttcatGTGACCACCATTCCCTCTACCTCTGCTTTGCCA
TCTGACCGGTCAAAATGAGAAATTAGGAAGTTGTATGTGTGTGTAGCCCC
TATGCACCTAGAATCTGTGCTTACAATAAGATAATAAGGATGAGGAAACA
AGGACCTAATTATTTTGATCACATGACTTAAAGCGTAAAAAAGTTGTAAG
ATTTTAAAGGATTGACTGTCTTAAGTTAGCACATGTTCCGTCTAATGTGT
AAAATTGCTTCCTTTTTGGCTGCTTTATTGAAAGAATTGTGATTTTAACC
AAAGTTATTCAAGTTATATTGTTTGATGGGTGAATTTGTTCAATAAGAAT
AATACCAGATAATACCAATAATTTCATTAAAGGCTTATTTTGGCTATTTT
GCAGATTGGGTGAAGATATTAGAGGATGCATGATGATACGAGACAAATCT
TGGATGGTATTGAGTGAAAATGGTATCCAGATTTGCAAAATGTCTATCCT
GTATCCACATTACATTCTTTTCAGTCAGTTCGTTGATAAGTTCATTATTA
CTTAGGATGATAATGTAAAGACATTCGTTTGATTGTCCTCTCTGTTTGTA
CTGTTTGTACTGTTGCTTGATGATTTCCTAGTAGCAGTGAGGTTGAAATA
TGATTAGATTCTGATTAGAAAAGGtattatgttttctttttttttccttt
ctgaTTAGGCCTTCCATACAAGGGGTAATCCGAGAAGAATTTACAGGGAG
TTTGTGGgagtgtttttccatttttctagGAGctagttattctaaaattt
ctaggGGACAAGAGAGACTGATTTTAATTTGTCCACTTTTTGTATTAATA
TTTTATGGTACAGCCCATCAAGATTTTCAAGATGATGTGATTGGAAATAC
ATTCCTTTTTCAGGTGACTACTAAAGAAAAGAActataattttgtttgtt
tcCAACTAAATTACATTTTATCTATCAAAATGCTATGAAGATTATGTTTT
GTAGATTTGAATTTCGAagcgatttttaaaagaaattatctttccaacaa
ggtATTACTTTTAATGGTATATTCTTCCTTCAAGaacaaatgtttcaaaa
ttattgTTTTGGCTGCCATCTTCTTTTGGAACAGTCCGCAATGGAGCCAG
ATGACTAACTAAAGCTTTGGTAATGGGCTGtaggaaagaaaacaaaatgc
TTTCTTTTAGCATATTTTGCTTCTTTAAGCTTTTCTAGAACTTTTTGgtc
atgtaaaaataattagaATTATGATGCATATGGAATTCGAAGTATTCAGG
CAAAATTTGTAGCTCCATAACTTCAATTCCTGATCAGATTAAAGAACTGA
AACTTTGGgatctgataaaaaaattctgcGAAATTCTACTGAGTAAATTT
TTGGACTCAGGCTTTCACTTCCTTTTCTTCTTATTTCCACCTCTGTTtca
tgatgtctgaaattttagtactgacccccagATCACAGTGagctttttaa
ataaaaaaaatattatattgtaAGTAATGGCAACATCTTGGATAGTTGGT
TTTGTATCACACCCAATTGGAGCACGCATTGTTTACTATCCTACCCTACT
ATATGGTATCATGCGACAAAGTGAAAACAGACACTGGTATGATAGGATAG
ATGACCGAGTCCTATTAGGTGCATTACCGCTACACAAAGTTGCCAAAGAA
ATCATTGATAAAGAAAACGTTGGAGGAGTAATCACTCTGAATGAGAATTA
TGAGACAAGGTTTCTTTGTCCATCTCAAAAACAATGGTCTGTGATGAATG
TTAAAAACCTTCGCTTACCAACAACTGATTTTAATAATGCACCAACTATG
GATCAAATTAATCAAGGACTCGAATTCATAAATGAAATGGATAGTCAATC
TAAAAGTGTATATGTTCATTGTAAAGCTGGTAGAAGTCGAAGCAGTGTTG
TTGTGTTATGTTACGTCATGTCAAGATATGGACACAATGTTCAGGACGCT
ATTGACTTCGTCAAAACTCAACGACCGCATATTGTCTTAGGATCTGAACA
TATGAAAAGATTACATCAGTTTCATAATGTAAATAATGGGAGTCGTAACT
TTTAGTATTAGACAAATTTTTAAATTGCATATCATTATCAATAGAACTGA
AATTTGAATACAAATATTTGTTaagtttgttctttttgaaactgctttta
attttatattttgcacCTGTCTGATttgatttcaataaaaaagattcaat
tttcaaagtttcGTGTACGCTGTTTGCGTTAATATTTACTGTTgctcatg
gcgttctaaattacAATTAATTTACAAGTAATTTAGAACGNttttttaaa
agaaattatctttccaacaaggtATTACTTTTAATGGTATATTCTTTCTT
CAAGGAGAAAtgtttcaaaataattgttttggCTGCCATCTTCTTTTGGA
ACAGTCCGCAATGGACCCAGATGACTAACTAAAGCTTTGGTAATGGGCTG
taggaaagaaaacaaaatgcTTTCTTTTAGCATATTTTGCTTCTTTAAGC
TTTTC Run BLAST on NCBI transcript from alignment at sc0000050:311006..313760+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004994 ID=TCONS_00004994|Name=TCONS_00004994|organism=Clytia hemisphaerica|type=transcript|length=2755bp|location=Sequence derived from alignment at sc0000050:311006..313760+ (Clytia hemisphaerica)
cgaaaatttgtaacacgcgaaaatatataccaataataATTCAAATAGGA
ATacgttaaaaaaaaactttaataattTAGTCActatttaaaagaacaaa
ttatataccaTGCTTTCCACAAagatataaaatcaaaacaattattTGCA
CACAAGGAATCTTTGAATAGGCCTTTGCAGTGAATCGAAATGATAAtggt
tttcttttgaatttcatGTGACCACCATTCCCTCTACCTCTGCTTTGCCA
TCTGACCGGTCAAAATGAGAAATTAGGAAGTTGTATGTGTGTGTAGCCCC
TATGCACCTAGAATCTGTGCTTACAATAAGATAATAAGGATGAGGAAACA
AGGACCTAATTATTTTGATCACATGACTTAAAGCGTAAAAAAGTTGTAAG
ATTTTAAAGGATTGACTGTCTTAAGTTAGCACATGTTCCGTCTAATGTGT
AAAATTGCTTCCTTTTTGGCTGCTTTATTGAAAGAATTGTGATTTTAACC
AAAGTTATTCAAGTTATATTGTTTGATGGGTGAATTTGTTCAATAAGAAT
AATACCAGATAATACCAATAATTTCATTAAAGGCTTATTTTGGCTATTTT
GCAGATTGGGTGAAGATATTAGAGGATGCATGATGATACGAGACAAATCT
TGGATGGTATTGAGTGAAAATGGTATCCAGATTTGCAAAATGTCTATCCT
GTATCCACATTACATTCTTTTCAGTCAGTTCGTTGATAAGTTCATTATTA
CTTAGGATGATAATGTAAAGACATTCGTTTGATTGTCCTCTCTGTTTGTA
CTGTTTGTACTGTTGCTTGATGATTTCCTAGTAGCAGTGAGGTTGAAATA
TGATTAGATTCTGATTAGAAAAGGtattatgttttctttttttttccttt
ctgaTTAGGCCTTCCATACAAGGGGTAATCCGAGAAGAATTTACAGGGAG
TTTGTGGgagtgtttttccatttttctagGAGctagttattctaaaattt
ctaggGGACAAGAGAGACTGATTTTAATTTGTCCACTTTTTGTATTAATA
TTTTATGGTACAGCCCATCAAGATTTTCAAGATGATGTGATTGGAAATAC
ATTCCTTTTTCAGGTGACTACTAAAGAAAAGAActataattttgtttgtt
tcCAACTAAATTACATTTTATCTATCAAAATGCTATGAAGATTATGTTTT
GTAGATTTGAATTTCGAagcgatttttaaaagaaattatctttccaacaa
ggtATTACTTTTAATGGTATATTCTTCCTTCAAGaacaaatgtttcaaaa
ttattgTTTTGGCTGCCATCTTCTTTTGGAACAGTCCGCAATGGAGCCAG
ATGACTAACTAAAGCTTTGGTAATGGGCTGtaggaaagaaaacaaaatgc
TTTCTTTTAGCATATTTTGCTTCTTTAAGCTTTTCTAGAACTTTTTGgtc
atgtaaaaataattagaATTATGATGCATATGGAATTCGAAGTATTCAGG
CAAAATTTGTAGCTCCATAACTTCAATTCCTGATCAGATTAAAGAACTGA
AACTTTGGgatctgataaaaaaattctgcGAAATTCTACTGAGTAAATTT
TTGGACTCAGGCTTTCACTTCCTTTTCTTCTTATTTCCACCTCTGTTtca
tgatgtctgaaattttagtactgacccccagATCACAGTGagctttttaa
ataaaaaaaatattatattgtaAGTAATGGCAACATCTTGGATAGTTGGT
TTTGTATCACACCCAATTGGAGCACGCATTGTTTACTATCCTACCCTACT
ATATGGTATCATGCGACAAAGTGAAAACAGACACTGGTATGATAGGATAG
ATGACCGAGTCCTATTAGGTGCATTACCGCTACACAAAGTTGCCAAAGAA
ATCATTGATAAAGAAAACGTTGGAGGAGTAATCACTCTGAATGAGAATTA
TGAGACAAGGTTTCTTTGTCCATCTCAAAAACAATGGTCTGTGATGAATG
TTAAAAACCTTCGCTTACCAACAACTGATTTTAATAATGCACCAACTATG
GATCAAATTAATCAAGGACTCGAATTCATAAATGAAATGGATAGTCAATC
TAAAAGTGTATATGTTCATTGTAAAGCTGGTAGAAGTCGAAGCAGTGTTG
TTGTGTTATGTTACGTCATGTCAAGATATGGACACAATGTTCAGGACGCT
ATTGACTTCGTCAAAACTCAACGACCGCATATTGTCTTAGGATCTGAACA
TATGAAAAGATTACATCAGTTTCATAATGTAAATAATGGGAGTCGTAACT
TTTAGTATTAGACAAATTTTTAAATTGCATATCATTATCAATAGAACTGA
AATTTGAATACAAATATTTGTTaagtttgttctttttgaaactgctttta
attttatattttgcacCTGTCTGATttgatttcaataaaaaagattcaat
tttcaaagtttcGTGTACGCTGTTTGCGTTAATATTTACTGTTgctcatg
gcgttctaaattacAATTAATTTACAAGTAATTTAGAACGNttttttaaa
agaaattatctttccaacaaggtATTACTTTTAATGGTATATTCTTTCTT
CAAGGAGAAAtgtttcaaaataattgttttggCTGCCATCTTCTTTTGGA
ACAGTCCGCAATGGACCCAGATGACTAACTAAAGCTTTGGTAATGGGCTG
taggaaagaaaacaaaatgcTTTCTTTTAGCATATTTTGCTTCTTTAAGC
TTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004994-exon-sc0000050-1491911889:311006..313760 | TCONS_00004994-exon-sc0000050-1491911889:311006..313760 | Clytia hemisphaerica | exon |
| TCONS_00004994-exon-sc0000050-1510915933:311006..313760 | TCONS_00004994-exon-sc0000050-1510915933:311006..313760 | Clytia hemisphaerica | exon |
| TCONS_00004994-exon-sc0000050-1575043694:311006..313760 | TCONS_00004994-exon-sc0000050-1575043694:311006..313760 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:311006..313760 + |
Blast
BLAST of TCONS_00004994 vs. Swiss-Prot (Human)
Match: PTPM1 (Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 OS=Homo sapiens GN=PTPMT1 PE=1 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.217e-42 Identity = 73/173 (42.20%), Postives = 109/173 (63.01%), Query Frame = 2
Query: 1772 ARIVYYPTLLYGIMRQS----ENRHWYDRIDDRVLLGALPLHKVAKEIIDKENVGGVITLNENYETRFLCPSQKQWSVMNVKNLRLPTTDFNNAPTMDQINQGLEFINEMDSQSKSVYVHCKAGRSRSSVVVLCYVMSRYGHNVQDAIDFVKTQRPHIVLGSEHMKRLHQFHN 2278
AR+++YPTLLY + R +R WY RID VLLGALPL + ++++ ENV GVIT+NE YETRFLC S ++W + V+ LRL T D PT+D + +G++F + S + VYVHCKAGRSRS+ +V Y++ + + ++A+ + R +I + + L +FH
Sbjct: 12 ARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQLVQDENVRGVITMNEEYETRFLCNSSQEWKRLGVEQLRLSTVDMTGIPTLDNLQKGVQFALKYQSLGQCVYVHCKAGRSRSATMVAAYLIQVHKWSPEEAVRAIAKIRSYIHIRPGQLDVLKEFHK 184
The following BLAST results are available for this feature:
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