TCONS_00004988 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004988
Unique Name	TCONS_00004988
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2452

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000050:204453..214150+

transcript sequence

>TCONS_00004988 ID=TCONS_00004988|Name=TCONS_00004988|organism=Clytia hemisphaerica|type=transcript|length=2452bp
CAAACTCTACCAACCCGTACTCAGGCGATTGTGAATTACAGGATGGTGAA
AAATTATCTAAAACGAATTTATATATTAGAGGGTTACCAATTTCAACGAC
AGACGATGACTTAGTTAGTATGTGTAAAGTATATGGCAACATCATTTCGA
CCAAAGCGATTCTCCACAAAGACACGAACCAATGCAAAGGATATGGCTTC
GTCGACTTTGACAACCCAGCTTCAGCTCAAAGAGCAGTAGCATCTTTACA
GAGTCAAGGTGTTCAAGCTCAAATGGCTAAACAACAAGAACAAGACCCAA
CCAACCTTTATATCTCAAATCTACCGAAAACTTTAGATGAACAGaCCCTA
CAACAAATACTTATGCCATACGGAAATGTCATTTCAACACGAATTTTACG
AGATTCGAACGGATGCAGCAAATGTGTTGGTTTTGCCAGAATGGAATCGA
AAGAAATTTGTGAGAAAATTATCAACAGTTTGAATGGCAAATATTTACAG
GGAAGTTCAGATCCACTACTCGTGAAATTTGCTGATGGTGGACCAAAGAA
AGCGAAACCAGaTAAAGTGTGGCGATCTCATGACGAGagTTACATGGGTT
ATGATGTTCGAAGTCCTGTATCctCTGTACCATCACAACCGACTGCACGA
GTTACTCCAGTTGTTCAAAATCAAATGATGTCACCATCGGGCGTCAATTG
GGGTGTTCAACAACAATCATATACCGTCGTCTCACCGCAAGGGGTGCCAG
TGTCGCCAGTGGACACAGCCACAGCAATGCAATCCAACATCACCCATATG
ACCAATCAAATGGCACAAATGCAAATGCATGGTGCACCATCTAACAATGG
TCAATACATCGTGCCTGGTGGCTACCCGTCGGCCGCTGCGGCGCATCAAA
ACACATGGCATGGAATGTCGCAACAGAGTCATCCACAGTCGAATATACAG
GAATCACCAGTCATAATGACTGCAACCGAAGTAGAATCGAACTATCCTCC
ACCCCAGATACAAACAACAGGGCCACAACAACACATGCCACATGTCGTCA
GTAGTGAATTGTATTCCGACGATCAACAGAACAGAGTCTATTACGCAAGG
AAATAGAGCACTGACCCAAACAAGACCGATTATTTTTTGATACAGAAACG
TGCAAGCAATGAGCTGTTTCCTCGTTTCTTAAGAGACAGGTGGACTTCTT
GCTGAGCTGGTGAAATGTGTGGTTACGGAACCAAAGGAATAGAGACTAGC
TGGAACGTTAGATGAGGGATTGAAACTTTGGGCTCTTTTTAAAAGATCCA
AGGACAAATGGAATTGCTTGGACTAACCTTTGTAACGCGATCATTGATGA
TATTGTCTACTGATTCAACGTATCAATTTTGCCGGATTCGAATAATGGAC
AAGAAAGAGACTACCGAATCGGTGATAAAATTGAGATAATGTCGATGATA
AATAGataaaatgaacattttctacaaaacaattttttctttctttttat
tttatttttttgtgacaGCGAAGCTTTGTTGCTGTTACAGAAATTTCTCA
AACTTTTAGAGTATAAATTAACAATTTTCTAGGATACTCAGGGCATTGAT
AATAGTTTCAGGCTAACGGcgatattttaaaaaatttctcgaTGAACAAA
AATCTCTTTTAAGCATTgataatgacttaaaaataattttccatgaaatt
ttatcataacttgaaatttcaaaaatcttttagaagaaagttttcaaaag
aaaaccaaataattttattatttttaggaagaattttttcttttagggaa
ttttaaaattttaaacagaTTTAAAAGAGCTGTGAATATGTGAAGAGact
aaaaagttttatttgaaaaaaagcaagtattttttatacttttagTGTTT
GAAATTCCGTAGTGCGTAGAAAAATTCGAGCGACAGTGAGTtagtgaaaa
agattttttttacctttttgaatTCACGATTTATTTTGGGACGTGTAAAA
AATGTGTGAGAAAAATATAGACTGATAAGGCTttcaatttagaatttttg
aatttgcAAATCCAGGCAATGGGTCCGATTCCCTTAggttaatttcaatt
ttgttgtttttgttatttttttgttttgtttttaatattgatgcttttga
gaaaattttaattatttgattttattgtttttttctacttctcatttttt
cattttttttgttcttttagcACTTTATCCTTTTTGAAAGGATGGCACGC
TAACTTAGACTTTaagaagaaaatttattttatttattttcttggaATAG
TTtttaggaaaagaaaaaaaaggtttttatgaagaattttttcatcattt
tttatgTCAGTGACCGGTTACCTTAGCAGCTGCGTTCCAGTCCTGGTTTC
CTACCCTACAGAATCTTTTTTCACCTTCTTCGGGTAGTGGTGTTagtaat
tt

Run BLAST on NCBI

transcript from alignment at sc0000050:204453..214150+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004988 ID=TCONS_00004988|Name=TCONS_00004988|organism=Clytia hemisphaerica|type=transcript|length=9698bp|location=Sequence derived from alignment at sc0000050:204453..214150+ (Clytia hemisphaerica)
CAAACTCTACCAACCCGTACTCAGGCGATTGTGAATTACAGGATGGTGAA
AAATTATCTAAAACGAATTTATATATTAGAGGGTTACCAATTTCAACGAC
AGACGATGACTTAGTTAGTATGTGTAAAGTGTAAGTAATGCTTTAGTTTT
CTTTtcacattttcattaaagtgtaaaaaatgctttatttttctttccac
GTTTTCATTAAAGTGTAAATAATGCTTTAGTTCTCTTTTCacatttattt
ttaattgtaaGTGATGCattagttttcttttaaaatctttcataTCTGGA
ATTATGCATGCTAGGGTCATTCTAAGAAATTGTCAACTACGATTGGAGAT
CTACGCCTGATCGGTGCTATCAAATGGTGCATGGGTCAGTGCGCTCCTAG
GTCCCCTACTGGTGGTATATCCAGTCAAAATAAGCGTGACCTATAACGTA
CCCCTTCCTCTGGAAAGGCTGTTCATTCTTTCTGTTTACCACATGtatga
aacaaaacaaaaatagataACCAATGTCTCATTCCTGTGGAAGCTGTTAC
CTCTGGATATTTTCCGATTCCTTTCTGTATTTGTATGTAATACTTACATT
AGTGACAAGGCTCGGATTTTAAATAGATTTCAAGATGGTATCACAAGGCC
AATTTTAAAGCATCGACCAGTAACTGCCGCGATACATTCCCTGTTAGAAA
CTGTataaattgggcttttccagaaatagtccgtgcccactgttgaggat
atcggatggatatccagggggttaaatatctacaagggagtggGTATCAG
GGgataaagtgtcttttcaagtaaaaaatacgatacccaggggtaagcat
ctttataaaagAGGATATctagggggttgagcatatttttaagagtgtaT
ATCCAGGGGCAGTTActggtctttactaataaagggggttcgatactttg
aaaaatcaatatcctcaacagtggggtaaaatcttttttctggaaaagcc
cattggaGCTGAAATTACAAATCTTTATGCTCTATTTTTCCAATACAGAT
ATGGCAACATCATTTCGACCAAAGCGATTCTCCACAAAGACACGAACCAA
TGCAAAGGATATGGCTTCGTCGACTTTGACAACCCAGCTTCAGCTCAAAG
AGCAGTAGCATCTTTACAGAGTCAAGGTGTTCAAGCTCAAATGGCTAAAG
TAAGTTTTTAAAGGCCTTACATTTTCATTGCCAACAAATAAGAGATTTGA
TTATGTTACTCTTGAACCAAGATTTGTTTTGTATTCAATTATTCCATGAA
TTGTTTGGTCAGGTCAGATATAAACGTCTAATGATTTCTACGAAATACTT
TTACTTCTTTTCAGCAACAAGAACAAGACCCAACCAACCTTTATATCTCA
AATCTACCGAAAACTTTAGATGAACAGGTAAAAAGAATTAATAATTTTTA
CATTATCATACCTAAAAAGCTACTATACACGTTTATATCACATGTTCATC
CTTAAGCTTCTATAGTTTCCAGGCCATTGAAATAGCCAAAGTATACTGGT
AACAATAAGGCACTATAGACTTACTGGCTTCGCAAAATACCTTTGACTAG
AAATAAGTTGGAGTGGTGTAATACTGCAGTGTATTATTGAATTCCCTGGA
ACACTCATAACAGTTTCTAAtaccttcccagctggcacaaaacgttgttt
caacgttcatataacgttatatgaacgttatgaacattagaaaaacgtta
aaacaacgttgtttgccaGCTGGGTTATTATATGTGTTCATAATATTAAA
CTatggattcttttgttttttatagaCCCTACAACAAATACTTATGCCAT
ACGGAAATGTCATTTCAACACGAATTTTACGAGATTCGAACGGATGCAGC
AAATGTGTTGGTTTTGCCAGGTAAAAGAATTGTCTGATTTCACATCTTGC
TTCATTGGAAACTATACCGAAGCCAttacattttttcaatttgataTATT
TCACACTACCCTTAGGCTCAGAATTCTAAAGCGATGTTCTGGATGCTCTA
AGAAAAACATATGCCAGGGGCGACATTCTGATACCCACACCCTTGTTTAA
ACAAAGTAAACGGAAAGAAATCAGCTATACATCTATTTCTGAATTTAATC
ACACGTTTTTTTACGagaagaaaactttttaagccttttgatgttcttta
tttttttgagtttcaaattttcaagtttaaaggtGTTCTATGTTCTTATT
TATGTCCATTTTCCTCTGAAAttgttttcgagtccgcaaagccataaaat
gttcttaacttgttcttaacattttggccatggaagcattatgctcttat
atagtttgttcttataaaaaaaaaacgttttattaTAATTCTTTACCTCT
GCTACACTTTTAGAATGGAATCGAAAGAAATTTGTGAGAAAATTATCAAC
AGTTTGAATGGCAAATATTTACAGGGAAGTTCAGATCCACTACTCGTGAA
ATTTGCTGATGGTGGACCAAAGAAAGCGAAACCAGGTTTGTCTTAATAAG
AATCATACCGTTGGTCTTATTTCGatatccctcttctaatttcgacaccc
ttctttagagatagaaataatgggaaggtcggaatcactgattgaaactg
attttctttgCTTAACGATCACAGAGGAATAAATCTCTTGTCtgtcagtg
attctgacctacctattattcctatctctaattagaagagggatgtcgac
attaaaCCAACCTACGGTACTTATTAATTTGAATTCTATTTTGTCTATGT
GCGCTCTTAAATTACGAAACCTTTTCCCAAGAAACTGTAAAAGTGACGGA
TTAAAGTGTTATGGTGCTGTGTTATGTACAGTATTGCGTAGATTGAATTT
GCACCAACGggaggatttttttatttcgatcctttaaaatgcttcaaaat
aCAATAAGCCGAAGCGGTATAAAGGTCCAGCGACACGAAACTGTCGTTAC
TCTTAgatgccaaataaacggccccccccccgcttgttaatttttcgatt
tttttccaacccccccggactttattaggacccccccgtttattaagttt
tgaaataatttccagctcccaaaaggaaagtttcttgttttactctcaaa
agcctaaatttagtctatttgaccctttttagggtttttaaaagtcaatt
ttccaaccccccggtaattatgtccccccccgtttatttgatttgaaaat
tctttccaacccccctgtttattcgaaccccccgtttatttggcacctaa
gagtacaagGACAGCATGATTTCTTCTAAAATGAACTTGAATATTAAAGC
ACTGGACAAACCACGAACCAGAACTACGGACAGTAGGTGAAATGCTAAAA
ACGGCCCATGTACCTTTTAAAACGTGAAACCTTCTCTCAAGAAACTGTAA
AAGTGACGGATTAAAGTATTACATGGTGCTTTGTTAAGTACAGTATTGAG
TAGATTGAATTTCCCAATCTCTTACCCAGAGCTTcttgcaccactttttg
attttacttatGGGTGTGTGATACAATCCTTTCGTAAGTACGcacgctat
cagaatcataaaagagtgaactaagggactgggttcgagtttgaaatttt
tcaacactAACAAACTACAAATGTACGATACGTaatatatttctattttt
tttctagaTAAAGTGTGGCGATCTCATGACGAGGTatgttttgttgaaaa
aaaaacactcaaaagTTCCCgtattttttgctattttaaaTAAAGTTACA
TTCCATCCAGTatttagtctagcaagctagacgactaattcaaacATAAT
agaaatggaggaaaaaattTTAGTCTATaaaaactaaatcccgtaacaat
aatcgtattatcatataacgcctatactactgtattccacgcattataaa
cgactccagtctatccaATATTCGGTATTTCCGGAGCATAACGTTTGCAT
TTCTTGATTTTGCAATATCCTTCACCGGGGAGGGGGTAACTAAGCAAGTG
AAGGTACGTGTATGTGCCTTAAAGGCTACATTTTTAGAGGTTGGAGAGCA
CGGCGTccttcctcctttctgacataATGTATTATTAATCCTCGAACgct
ctctttcattttttcagagTTACATGGGTTATGATGTTCGAAGTCCTGTA
TCGTAAGTAAACAAATTACATTCGATATTCTTTATAAAGTAATGAAGCAC
CATGCCAATATGGGAATTTTGACTCATTTTAGCATTTAGCCCTTCCNATC
TTTATATAGTAATGAAGCATCATGCCAATACGGGCATTTTGACTCATTTT
AGCATTTAGCCCTTCCATATAATTTGGAATATTCAAAAATTAGTATTCAA
TCAATGTTTTAGCTTTTCATATCATCATTTTGCAAtcattgttttttaat
aaaaaatccaattttcagctCTGTACCATCACAACCGACTGCACGAGTTA
CTCCAGTTGTTCAAAATCAAATGGTATTCCTTTATGTTTTTCTTCTATGA
TATTAAATTTTGTTAGGCACTTGGCCCACCCTTATTTTTGATCAATGAAA
CTTTCGAAATCCTTCTCCATTTATCAGGCCATCGTTACCGTACACATAGC
CCACATTTAACGTCTATCTAACGTCATGTACCGTCAGCTGACAGTGTGGA
AAGTTTTCCCCATGCCCCAAAAGGGGGAGGGGGGTGTGCCACCAAAGTtg
gaaaaatggaccctacgtgggactcgtttttttttaaagtgaccTTGATG
GAActgaaatatatattttccaaattttccccAATAAAGATACCCTACGg
gtgactgatttttctattttggtgttttttgcgaccctacctgggactca
tgaAGGTGAAAAAAGATACCCTGACCAGCGACACATCCCCGTAAATTTTC
GAATACACCAtctcaagcaaaatgactcacaagAAACCAATCCTGATAGC
TCTTAGCGATACTGGTTACTTACTTTGTAGGATTTTTGCCAACTCTCTTT
GACACTGTATCATTATTCATTCTAGATGTCACCATCGGGCGTCAATTGGG
GTGTTCAACAACAATCATATACCGTCGTCTCACCGCAAGGGGTAATGCTA
CCTAATTCTAGTTGGAATTTCAGGTCTAAACATTGAAAAAGTCTGTTCCG
CTCACCAGAAGGACTCATATTGAAAAAGAATCCAGTGGCagttataaaaa
aatttaaatgtgGAAATTTTTTATATGGTTTTGACACAGTCATTGTAAAT
GACCCATTTTATAATGCATTATTAATAAAGACTATGGTTTAGGTTAGATT
GCAATTTGTGAACGGATtgcgaaaatagaaaaaaaatcttcgcTTTATAT
TAACTAGATACTATTCTTGATNCTCTTTGACACTGTATCATTATTCATTC
TAGATGTCACCATCGGGCGTCAATTGGGGTGTTCAACAACAATCATATAC
CGTCGTCTCACCGCAAGGGGTAATGCTACCTAATTCTAGTTGGAATTTCA
GGTCTAAACATTGAAAAAGTCTGTTCCGCTCACCAGAAGGACTCATATTG
AAAAAGAATCCAGTGGCagttataaaaaaatttaaatgtgGAAATTTTTT
ATATGGTTTTGACACAGTCATTGTAAATGACCCATTTTATAATACATTAT
TAATAAAGACTATGGTTTAGGTTAGATTGCAATTTGTGAACGGATtgcga
aaatagaaaaaaaatcttcgcTTTATATCAACTAGATACTATTCtttatg
cgtaagtcaagatgacgtcatattttttaacggaagcacccaaaaaagcc
ggtttttgtcctccgtgtttctatttttagtaacagagagaggtcaaatc
ctAGCTTTTTAGGGTGTTTACGctagaaaaattactttcgcATATCAAGC
ATTATTCCTTCGCTTCAAATGTACACTTCATTTTGCAAAATGTGAAAACC
ATTCTCAAGAGATATAGTCTAAATACTTACATGGTTTTCACATGGTAAAA
ATAGTGAACATTCAAAACGAATGGACTTTAAGAGACAATTTTTCAATATT
ACTCCCttcaatgggctattccagaaatagtctgtaccccttATGTTgcg
gaggtgtgacgtccagggtggtttggaaaattaaaaatccagagtggtca
gtaaaatcgggttgaaaatccagggtggtcagtataacgaggtcgaaaat
ccagggtcCAAAGATatgggagaaaaaaatccaagggggtcaccttttta
aaaaaagatctccccagcatagggggtacaaattttttctggaatagccc
aattgtATGAACTTACATAGATTTTAGTACCGCACTATATTATCATTTTC
TTCTCATCAACAGGTGCCAGTGTCGCCAGTGGACACAGCCACAGCAATGC
AATCCAACATCACCCATATGACCAATCAAATGGCACAAATGCAAATGCAT
GGTGCACCATCTAACAATGGTCAATACATCGTGCCTGGTGGCTACCCGTC
GGCCGCTGCGGCGCATCAAAACACATGGCATGGAATGTCGCAACAGAGTC
ATCCACAGTCGAATATACAGGTTCTTAAATGATTTCTTTCATTGCATCGT
CTGGGTTTAATCGTgttaaaaagctctaaaatCAAGAGAAGAAATAGATT
GTTTAATCTATAAATAAAACAGCCGTAATGACGGCTGCAAACTCCGGTAA
TTGTTATAGGTCAGCCTTTCTTAAAATATCTAACATAAAAGTAAGTGCAA
GCGCAAACACAAaccaaatcgggaaatcaaaccggaaagatcgggaaatc
gaaccCGACTATCACGATTGATTggatttacgcacaattacaaatgaaaa
acactgattttaagaaactccttaACCGGGAGTTTAATTAGTTATAAGCA
TCTGAATCCAATACGATTTCTATTATTGAAAATTCTCCAAACAGTTTTCt
aacaaaatttcaatattttgaattttaagaatAATGAGAACCCGGGGCCC
AGTTTTGGCTTAAACTTTATCTCAAAAATAGAGCTTAAGAGAAAAACTTG
AGAACAATTCGGTAagaaaatatctaaaataataACACCTAAAGCCTCGA
CTAAACATTTTTGCTCGTTAGAAAACTTCATAAAACGGTAAGCGTTTATA
TCTTTAGAAATTAGTACAATCACCCTGCAAGTTTataagggacataaaag
tactgacgaaatttgtaaacaaaccgcatgcagcgggatacaaaatcaaa
acaaatatcacatgttaaaagaaaaaatccaaacaaatatggctgatttt
gattgtttcaattgttttacaagtttgttttggacacgtgattttaattg
ttctctttaatgacacgtggttcgtgcattgtttacattttactactttt
atgtccctttaatattGAAGATTCTTTCTTTCAACAGGAATCACCAGTCA
TAATGACTGCAACCGAAGTAGAATCGAACTATCCTCCACCCCAGATACAA
ACAACAGGGCCACAACAACACATGCCACATGTCGTCAGTAGTGAATTGTA
TTCCGACGATCAACAGAACAGAGTCTATTACGCAAGGTATGTTTTTTATC
GAATTTATaccaaatagaccttttcataaatcacgtcacgaacatcactt
gcctcgtattcaaccaaatttccatggtgatcataTTCCTTgaaacatta
aatgatttttttgaacatttggGATGTGTTGTTGTGGCCATGTTGTTTGT
ATCTGGGGTGGAGGATTCTACTTCGATTGCAGTCATTATagaaaatagtt
gtaataaaatccgctgggagttaatcgcCAAGGCAATAATTtaaaaacga
ggcaagtgatgttcgtgacgtaatttatgaaaaggtttattgTAAAGAAG
TAATGTGAaatattcaatgtttttgtCAAGATGAAGTATAACAGTCAGAT
TCTAGGACCCCCTGTCTCCGTTTGAAATTCTTCCCATAGtgggaaaaaaa
tgtttatcgaAATCCAAATGGGNacccctgtctcacaactcCGTTTGAAA
TTCTTCCCATAGTGGGAATTAAAATGTTTATCGAAATCCAAATGGGGATA
GGAACCCTATCGTTCAAATAATCAAGTATGATTCCCATTAGACTTCGAAT
GGGGATAAGAAAATTAATATCCCAGTAGGGCTGAAGTTGTGGGGTATAAT
TTTTCAATGTGTCGGATGTCCAAGTAGGTCTGCGGCACTGCGGTGTTCTA
GGAACCGAATACTAATTAAAAGTTCATTTCTTGTTTTCTTTATAGGAAAT
AGAGCACTGACCCAAACAAGACCGATTATTTTTTGATACAGAAACGTGCA
AGCAATGAGCTGTTTCCTCGTTTCTTAAGAGACAGGTGGACTTCTTGCTG
AGCTGGTGAAATGTGTGGTTACGGAACCAAAGGAATAGAGACTAGCTGGA
ACGTTAGATGAGGGATTGAAACTTTGGGCTCTTTTTAAAAGATCCAAGGA
CAAATGGAATTGCTTGGACTAACCTTTGTAACGCGATCATTGATGATATT
GTCTACTGATTCAACGTATCAATTTTGCCGGATTCGAATAATGGACAAGA
AAGAGACTACCGAATCGGTGATAAAATTGAGATAATGTCGATGATAAATA
Gataaaatgaacattttctacaaaacaattttttctttctttttatttta
tttttttgtgacaGCGAAGCTTTGTTGCTGTTACAGAAATTTCTCAAACT
TTTAGAGTATAAATTAACAATTTTCTAGGATACTCAGGGCATTGATAATA
GTTTCAGGCTAACGGcgatattttaaaaaatttctcgaTGAACAAAAATC
TCTTTTAAGCATTgataatgacttaaaaataattttccatgaaattttat
cataacttgaaatttcaaaaatcttttagaagaaagttttcaaaagaaaa
ccaaataattttattatttttaggaagaattttttcttttagggaatttt
aaaattttaaacagaTTTAAAAGAGCTGTGAATATGTGAAGAGactaaaa
agttttatttgaaaaaaagcaagtattttttatacttttagTGTTTGAAA
TTCCGTAGTGCGTAGAAAAATTCGAGCGACAGTGAGTtagtgaaaaagat
tttttttacctttttgaatTCACGATTTATTTTGGGACGTGTAAAAAATG
TGTGAGAAAAATATAGACTGATAAGGCTttcaatttagaatttttgaatt
tgcAAATCCAGGCAATGGGTCCGATTCCCTTAggttaatttcaattttgt
tgtttttgttatttttttgttttgtttttaatattgatgcttttgagaaa
attttaattatttgattttattgtttttttctacttctcattttttcatt
ttttttgttcttttagcACTTTATCCTTTTTGAAAGGATGGCACGCTAAC
TTAGACTTTaagaagaaaatttattttatttattttcttggaATAGTTtt
taggaaaagaaaaaaaaggtttttatgaagaattttttcatcatttttta
tgTCAGTGACCGGTTACCTTAGCAGCTGCGTTCCAGTCCTGGTTTCCTAC
CCTACAGAATCTTTTTTCACCTTCTTCGGGTAGTGGTGTTagtaattt

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002829	XLOC_002829	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000050	supercontig	sc0000050:204453..214150 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.74035e-05	9.30584e-06	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00004988 vs. Swiss-Prot (Human)
Match: RBMS3 (RNA-binding motif, single-stranded-interacting protein 3 OS=Homo sapiens GN=RBMS3 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 3.052e-77
Identity = 123/175 (70.29%), Postives = 145/175 (82.86%), Query Frame = 3

Query:   45 GEKLSKTNLYIRGLPISTTDDDLVSMCKVYGNIISTKAILHKDTNQCKGYGFVDFDNPASAQRAVASLQSQGVQAQMAKQQEQDPTNLYISNLPKTLDEQTLQQILMPYGNVISTRILRDSNGCSKCVGFARMESKEICEKIINSLNGKYLQ------GSSDPLLVKFADGGPKK 551
            GE+LSKTNLYIRGLP  TTD DL+ +C+ YG I+STKAIL K+TNQCKGYGFVDFD+PA+AQ+AVASL++ GVQAQMAKQQEQDPTNLYISNLP ++DEQ L+ +L P+G+VISTRILRD+NG S+ VGFARMES E CE +I   NGKYL+        S+PLL KFADGG KK
Sbjct:   55 GEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKK 229

The following BLAST results are available for this feature:

BLAST of TCONS_00004988 vs. Swiss-Prot (Human)

BLAST of TCONS_00004988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RBMS3	3.052e-77	70.29	RNA-binding motif, single-stranded-interacting pro...	[more]

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TCONS_00004988 (transcript) - C. hemisphaerica