|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004980 ID=TCONS_00004980|Name=TCONS_00004980|organism=Clytia hemisphaerica|type=transcript|length=575bp
TGAAGAACATAATATAAAAGGAAGACGAGGAAtggaaaatccaaaaaaat
gtaTGAAATGCTCGAACCATGGTACAAAGAAATGTGGGCAATGTTTACAA
GTATATTATTGCAGTAGAGATTGTCAGATGGCTCACTGGAAAATCCACAA
ACCCTCTTGCAAACCGTGCAATAAACCCAAAGGGGCGTCCACTGAGAAAC
GAAAGGAAAGTAAAAATATGAAGCGTGCCAAAACTATTTATGTTAAGGCA
GGTTCCTTTGACTCTTACGACGAATTTGATGCAAAGACTGAATTATTTGA
ATTGGAAAGTTATGGGAACGAGGCTGGAGAGATGAAGGAGATTCGTTCAC
GATTCGGCTGGAGAGATGAAGGAGATTCGTTCACGATTCGGTTGGAAGGA
TGTATCAGGGActctttataaattttattcACCAAATGAAAGCGATTTTC
AATGGtattattatatttattatGATGATACTagaaatagagcaaaaaat
tttctgatgaAAATGTGTTCGCATCTGGGTGCTGTTCTTCAAAAATCtat
ggtgacgtcatcattcttCGTAGCG Run BLAST on NCBI protein sequence of TCONS_00004980-protein >TCONS_00004980-protein ID=TCONS_00004980-protein|Name=TCONS_00004980-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
EEHNIKGRRGMENPKKCMKCSNHGTKKCGQCLQVYYCSRDCQMAHWKIHK
PSCKPCNKPKGASTEKRKESKNMKRAKTIYVKAGSFDSYDEFDAKTELFE
LESYGNEAGEMKEIRSRFGWRDEGDSFTIRLEGCIRDSL Run BLAST on NCBI transcript from alignment at sc0000050:128903..134665+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004980 ID=TCONS_00004980|Name=TCONS_00004980|organism=Clytia hemisphaerica|type=transcript|length=5763bp|location=Sequence derived from alignment at sc0000050:128903..134665+ (Clytia hemisphaerica)
TGAAGAACATAATATAAAAGGAAGACGAGGAAtggaaaatccaaaaaaat
gtaTGAAATGCTCGAACCATGGTACAAAGAAATGTGGGCAATGTTTACAA
GTATATTATTGCAGTAGAGATTGTCAGATGGCTCACTGGAAAATCCACAA
ACCCTCTTGCAAACCGTGCAATAAACCCAAAGGGGCGTCCACTGAGAAAC
GAAAGGAAAGTAAAAATATGAAGCGTGCCAAAACTATTTATGTTAAGGCA
GGTTCCTTTGACTCTTACGACGAATTTGATGCAAAGACTGAATTATTTGA
ATTGGAAAGTTATGGGAACGAGGCTGGAGAGATGAAGGAGATTCGTTCAC
GATTCGGTTGGAAGGATGTATCAGGGACTCGCTATAAATTTTATTCACca
aatgaaattgattttcaatgGTATTATTACATTTATTATGATGATACTAG
AAATAGAGTGAAAAGATTTTCTGATGAAAATGTGTTCGCATCTGGGTGCT
GTTCTTCAAAAATCtatggtgacgtcatcattcttCGTAGTGGACCCATG
GGTAGCAATTCATACGATGAATCAATTTCTGTTAAAGACTTGTatgattg
ttttgaattttatcagACTCACAACTCAGTGAAAGTTTTCCAGCAACGAG
AGTATAAAAGATGTATGCAATCTTTTGGAGTTACTGGTGGGCAGCAGCCA
TCATGGCAGATGGGTGAATCTTTTAAATATggtgaaaacatttttgtttc
aaagataCTTTAACGTTTCTTCTGTAACCAAGAGATACTTACCCAATAGA
AAACATTTCATCTTCAAGTTTTGTTGTGTTTGTGTTGGATttcttgtttt
aaatattttgttaatatttcttCCTACCATTTGTAGAATGTCTTTTGATA
TTTGAATGTACAGTTGgttatttataaaatattggatAGACCACAGAATC
ATTATGTCTTCAAAGTTAAAGTCCAAAAACAGCTGTAATTCGCATTCGCC
GTATCTAGCAGGATCTACTTTTGGTCATTTCCACTGCTTTTCAGCCTCTA
AATTATGTCTGTTAAGGTTAAGGGCCAATATTTTGTCGAATTTTTGTTTA
ACAGGAACATTAAATAAAATAGGTTGTTTTATCTTTCGAACGATACGTCT
TCGTCGttttaaaaataccaaaagacTGACTTGTGGAACTTTATCTTTGC
GAAAAATATACTTTCCTCAAAATCTGTTGTTGGatagaaaataacttttt
tacaAAGATACTTTACCGAATTGTTTTCGCNGGAAAGTTATGGGAACGAG
GCTGGAGAGATGAAGGAGATTCGTTCACGATTCGGTTGGAAGGATGTATC
AGGGACTCGCTATAAATTTTATTCACcaaatgaaattgattttcaatgGT
ATTATTACATTTATTATGATGATACTAGAAATAGAGTGAAAAGATTTTCT
GATGAAAATGTGTTCGCATCTGGGTGCTGTTCTTCAAAAATCtatggtga
cgtcatcattcttCGTAGTGGACCCATGGGTAGCAATTCATACGATGAAT
CAATTTCTGTTAAAGACTTGTatgattgttttgaattttatcagACTCAC
AACTCAGTGAAAGTTTTCCAGCAACGAGAGTATAAAAGATGTATGCAATC
TTTTGGAGTTACTGGTGGGCAGCAGCCATCATGGCAGATGGGTGAATCTT
TTAAATATggtgaaaacatttttgtttcaaagataCTTTAACGTTTCTTC
TGTAACCAAGAGATACTTACCCAATAGAAAACATTTCATCTTCAAGTTTT
GTTGTGTTTGTGTTGGATTtcttgtttcaaatattttgttaatatttctt
CCTACCATTTGTAGAATGTCTTTTGATATTTGAATGTACATTTGgttatt
tataaaatattggatAGACCACAGAATCATTATGTCTTCAAAGTTAAAGT
CCAAAAACAGCTGTAATTCGCATTCACCTTATCTAGCAGGATCTACTTTT
GGTCATTTCCACTGCTTTTCAGCCTCTAAATTATGTCTGTTAAGGTTAAG
GGCCAATATTTTGTCGAATTTTTGTTTAACAGGAACATTAAATAAAATAG
GTTGTTTTATCTTTCGAACGATACGTCTTCGTCGttttaaaaataccaaa
agacTGACTTGTGGAACTTTATCTTTGCGAAAAATATACTTTCCTCAAAA
TCTGTTGTTGGatagaaaataacttttttacaAAGATACTTTACCGAATT
GTTTTCGCCGACAAATTTGACAAGAGTAACGTCTGCTTTTGGTTTTAGGT
ATTCTTTCATATttagacttcgtgagcaaaacatacatctatctcatcta
aaatttgagtaatttggTTAGGAACATTGATCGaagcttataaatagtga
ttcttatggatGAAGTCGATTTTTGAGGAGAAAATTATATCTGTGAAAAT
CTGCTCCAGCCATCgtttaacacccccttctcaccgaCTCACTGGAatat
ttggccaaaatatcgcccCCAGTAGAAAATTATACTACAATCTTTGttcc
gctgaaaataatcaaataaaccaatcctcgccgcaaaatattatgctaaa
tgttccatccccactgaattttgtgactcgaaaacaatggaatttaaatc
ccaggccataaaaaatatcaaaataacgaTCCTCAGCGAGTTTCAgtcaa
aacaagtgatacttttatggacctacctggttatgcatttaacacatata
taatttaTATCTACGTGAgaatgaacgttaaacaatcattcagaacacaa
atagtgacgatttattaaaattaatcgtttgtttcttacaaaaaaaacgt
ttagaaaccaaaatttcatgctcttgaaatattctttcatattcaagacg
ttttttgagctgaaaagttttcttacaaaaatctgcttgacccatctttt
acctactctcatacaaaaaatccatatttcacaaagtccaaaaaacccgc
tttttagccgttttttggcccaaatttgcccaaaaaattttttattcgaa
aatcaggctccgtccaCATTTTGGCCACCGCCGTTTTGCAcatttgtacc
aaaaatcaaatgattcctatgattcaatctcgatgaaaagctggtaacga
acggacggacggacagaggtgaatttatagaaccttcaccccaccggggt
aggtccaaaaaaaatcctataccgggtctgtgagaagggggtgtataaca
TCGCCCTTTGAATTTACGTAAttatcaaaactttttcatACTTTCTTTTC
ATTGAAGAACATAATATAAAAGGAAGACGAGGAAtggaaaatccaaaaaa
atgcaTGAAATGCTCGAACCATGGTACAAAGAAATGTGGGCAATGTTTAC
AAGTATATTATTGCAGTAGAGATTGTCAGATGGCTCACTGGAAAACCCAC
AAACCCTCTTGCAAACCGTGCAATAAACCCAAAGGGGCGTCCACTGAGAA
ACGAAAGGAAAGTAAAAATATGAAGCGTGCCAAAACTATTTATGTTAAAG
CTGGTTCCTTTGACTCTTACGACGAATTTGATGCAAAGACTGATTTATTT
GAATTGGAAAGTTATGGGAACGAGGCTGGAGAGATGAAGGAGATTCGTTC
ACGATTCGGTTGGAAGGATGTATCAGGGActctttataaattttattcac
caaatgaaattgattttcaatgGTATTATTACATTTATTATGATGATACT
AGAAATAGAGTGAAAAGATTTTCTGATGAAAATGTGTTCGCATCTGGGTG
CTGTTCTTCAAAAATCtatggtgacgtcatcattcttCGTAGTGGACCCA
TGGGTAGCAATTCATACGATGAATCAATTTCTGTTAAAGACTTGTatgat
tgttttgaattttatcagACTCACAACTCAGTGAAAGTTTTCCAGCAACG
AGAGTATAAAAGATGTATGCAATCTTTTGGAGGTACTGGTGGGCAGCAGC
CATCATGGCAGATGGGTGAATCTTTTAAATATggtgaaaacatttttgtt
tcaaagataCTTTAACGTTTCTTCTGTAACCAAGAGATACTTACCCAATA
GAAAACATTTCATCTTCAAGTTTTGTTGTGTTTGTGTTGGATTtcttgtt
tcaaatattttgttaatatttcttCCTACCATTTGTAGAATGTCTTTTGA
TATTTGAATGTACATTTGgttatttataaaatattggatAGACCACAGAA
TCATTATGTCTTCAAAGTTAAAGTCCAAAAACAGCTGTAATTCGCATTCA
CCTTATCTAGCAGGATCTACTTTTGGTCATTTCCACTGCTTTTCAGCCTC
TAAATTATGTCTGTTAAGGTTAAGGGCCAATATTTTGTCGAATTTTTGTT
TAACAGGAACATTAAATAAAATAGGTTGTTTTATCTTTCGAACGATACGT
CTTCGTCGttttaaaaataccaaaagacTGACTTGTGGAACTTTATCTTT
GCGAAAAATATACTTTCCTCAAAATCTGTTGTTGGatagaaaataacttt
tttacaAAGATACTTTACCGAATTGTTTTCGCCGACAAATTTGACCAGAG
TAACGTCTGCTTTTGGTTTTAGGTATTCTTTCATATttagacttcgtgag
caaaacatatacatctatctcatctaaaatttgagtaatttggctaggAA
CATTGATCGaagcttataaatagtgattcttatgaATGAAGTCGATTTTT
GAGGAGAAAATTATATTTGTGAAAATCTGCTCCAGCCATCGTTTAACACC
CCTTCTCACCGACTCTCTGGAatatttggccaaaatatcgcccCCAGTAG
AAAATTATACTACAATCTTTGttccgctgaaaataatcaaataaaccaat
cctcgccgcaaaatattatgctaaatgttccatccccactgaattttgtg
actcgaaaacaatggaatttaaatcccaggccataaaaaatatcaaaata
acgaTCCTCAGCGAGTTTCAgtcaaaacaagtgatacttttatggaccta
cctggttatgcattNcatttaaatccccagccataaaaaatatcaaaata
acgaTCCTCAGCGAGTTtcggtcaaaaaaaaaatcctataccgggtctgt
gagaaaggggtgtataaCATCGCTTTTTGAATTTACGTAATTATCAAAAA
CTATTTCATACTTTCTTTTCATTGAAGAACATAATATAAAAGGAAGACGA
GGAAtggaaaatccaaaaaaatgcaTGAAATGCTCCAACCATGGTACAAA
GAAATGTGGGCAATGTTTACAAGTATATTATTACAATAGAGATTGTCAGA
TAGCTCACTGGAAAATCCACAAACCCTCTTGCAAACCGTGCAATAAAGCC
AAACGGGCTTCAACTGAGAAACGAAAGGAAAGTAAAAATATGAAGCGCGC
CAAAACTATTTATGTTAAAGCTGGTTCCTTTGACTCTTACGACGAATTTG
ATACAAAGACTGAATTGTTTGAATTGGAAAGTTATGGGAACGAGGCTGGA
GAGATGAAGGAGATTCGTTCACGATTCGGTTGGAAGGATGTATCAGGGAc
tctttataaattttattcACCAAATGAAAGCGATTTTCAATGGtattatt
atatttattatGATGATACTagaaatagagcaaaaaattttctgatgaAA
ATGTGTTCGCATCTGGGTGCTGTTCTTCAAAAATCtatggtgacgtcatc
attcttCGTAGCG Coding sequence (CDS) from alignment at sc0000050:128903..134665+ >TCONS_00004980 ID=TCONS_00004980|Name=TCONS_00004980|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at sc0000050:128903..134665+ (Clytia hemisphaerica)
GAAGAACATAATATAAAAGGAAGACGAGGAAtggaaaatccaaaaaaatg
taTGAAATGCTCGAACCATGGTACAAAGAAATGTGGGCAATGTTTACAAG
TATATTATTGCAGTAGAGATTGTCAGATGGCTCACTGGAAAATCCACAAA
CCCTCTTGCAAACCGTGCAATAAACCCAAAGGGGCGTCCACTGAGAAACG
AAAGGAAAGTAAAAATATGAAGCGTGCCAAAACTATTTATGTTAAGGCAG
GTTCCTTTGACTCTTACGACGAATTTGATGCAAAGACTGAATTATTTGAA
TTGGAAAGTTATGGGAACGAGGCTGGAGAGATGAAGGAGATTCGTTCACG
ATTCGGCTGGAGAGATGAAGGAGATTCGTTCACGATTCGGTTGGAAGGAT
GTATCAGGGActctttataaGAAGAACATAATATAAAAGGAAGACGAGGA
AtggaaaatccaaaaaaatgtaTGAAATGCTCGAACCATGGTACAAAGAA
ATGTGGGCAATGTTTACAAGTATATTATTGCAGTAGAGATTGTCAGATGG
CTCACTGGAAAATCCACAAACCCTCTTGCAAACCGTGCAATAAACCCAAA
GGGGCGTCCACTGAGAAACGAAAGGAAAGTAAAAATATGAAGCGTGCCAA
AACTATTTATGTTAAGGCAGGTTCCTTTGACTCTTACGACGAATTTGATG
CAAAGACTGAATTATTTGAATTGGAAAGTTATGGGAACGAGGCTGGAGAG
ATGAAGGAGATTCGTTCACGATTCGGCTGGAGAGATGAAGGAGATTCGTT
CACGATTCGGTTGGAAGGATGTATCAGGGActctttataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004980-exon-sc0000050-1491911889:128903..129258 | TCONS_00004980-exon-sc0000050-1491911889:128903..129258 | Clytia hemisphaerica | exon |
| TCONS_00004980-exon-sc0000050-1510915933:128903..129258 | TCONS_00004980-exon-sc0000050-1510915933:128903..129258 | Clytia hemisphaerica | exon |
| TCONS_00004980-exon-sc0000050-1575043694:128903..129258 | TCONS_00004980-exon-sc0000050-1575043694:128903..129258 | Clytia hemisphaerica | exon |
| TCONS_00004980-exon-sc0000050-1491911889:134447..134665 | TCONS_00004980-exon-sc0000050-1491911889:134447..134665 | Clytia hemisphaerica | exon |
| TCONS_00004980-exon-sc0000050-1510915933:134447..134665 | TCONS_00004980-exon-sc0000050-1510915933:134447..134665 | Clytia hemisphaerica | exon |
| TCONS_00004980-exon-sc0000050-1575043694:134447..134665 | TCONS_00004980-exon-sc0000050-1575043694:134447..134665 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:128903..134665 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002893 | Znf_MYND |
Blast
The following BLAST results are available for this feature:
|
