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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004977 ID=TCONS_00004977|Name=TCONS_00004977|organism=Clytia hemisphaerica|type=transcript|length=1435bp
NNTTTTCTTTCCTCAATCCCATTCGTCGAAGATAATCAGCTCTGTATTCT
TCTGTTGTCAAACGTATTAAGATATCTAGTCGGCGGTCTTCTTCCCTGAT
ACTGCTTGCTTCTTTGGGTGATCTTCTTCTAAGTCTTGTCAAGATTATCT
CACTGTGCATCCTTCCAAAATACGAAAGAATAAGTTGGGGTTTTGTGTTT
ATTATATCCCTTTGCAGTTTGATACAGGGTGCTATCTTCAGCTGTATAAA
TTGAAAGCGAATTCTTGTGATTGTGTAGTTCAACCATCTTTCCTTCTTTC
TTGATTGATCGCTCATCGTGAGGTCGACTCGTATTTTCTTTAACAGCATG
GCCTGTTGCTTCTGTGACAtaattttatccattttgatttcTAGATTTAC
TCGTCCTGTCGCCAGAAGTAATTGAAAGCTGAGCGTGGACAATCGCAGCA
CCATCTTGTCAACCATCAGAATGTTGAACCGTGAAATATaatgatttttt
gtttcttttatatacCTCACAAAAATTTCGTTTGTTATTTCCTTTCCTCC
ACCGCTTCCTTTGTTTCGTCACATTACATATAGTACAAACTTTTGCGGTA
CTTCGGTTACCATGATTACAACTCCTTTAAAATTAATGAGTTTTTACCAT
AGTGATATAAGTGCGGTTTAGTTTGTAGTTTGAAACACAATTTTGAACAT
CAAAACATTAAGGTTATTTACATCTATTTACATTTTCTTCGTtgcttctt
ttattcaatggagTATCCGCAAACGGCATTTTGCATTGAGCCTCTGGAAC
TCTTCCGTTGCGTTAACCCTTTGTCCGCTACCTACAATTATTCCCAATAC
CATTCTCGTGTCTGTCTTCTTCAGGAAAGGGTATAGTATTTTGGGCAGCG
GGAATTCAAGCACAACCACGTGCTTGGTCCATTTTGATAATACTTTTCCG
GTTTTGATCATGAGGGTAGTTGGGACTTCTACAAAGTTTCGTGTGAGATT
TCCGTCAATTTCCTTTCCTTCGTGTACATTTTGTTTCATAAAGGTCAACC
CGTAAACGGTACCCAAGGCCGTAACCGCTATCGCAGCTAAAATTCCCAGG
CCAATCCAGCATTTTGATACTCCTTCTCGattgttacttttctggaaaAT
TGTTTTCTTGTTCCCGCTTGTAATGCTCTTCTCCTGAAAATTGATGATGG
CTTTCTCAGCACTTAAGATGTCTGTCCCAATTATCGCTTCTTCTTCGATA
TCGGGGACTACCAGGAAGTTTTGATTCTTTAGTGACTTCGGATCTACAAT
GCTCGTTGGAATGATTACACTTCCTGTGGTTTCTATTTCTTCTTCAGTTA
TGGAATTCAACGTTGTGTCGGTAACGTGTGTTAGAAATGGTGCTATTTCT
GCAGCGTCCCAGATATCTTTGTTTAGTAGTGAGTG Run BLAST on NCBI protein sequence of TCONS_00004977-protein >TCONS_00004977-protein ID=TCONS_00004977-protein|Name=TCONS_00004977-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
HSLLNKDIWDAAEIAPFLTHVTDTTLNSITEEEIETTGSVIIPTSIVDPK
SLKNQNFLVVPDIEEEAIIGTDILSAEKAIINFQEKSITSGNKKTIFQKS
NNREGVSKCWIGLGILAAIAVTALGTVYGLTFMKQNVHEGKEIDGNLTRN
FVEVPTTLMIKTGKVLSKWTKHVVVLEFPLPKILYPFLKKTDTRMVLGII
VGSGQRVNATEEFQRLNAKCRLRILH Run BLAST on NCBI transcript from alignment at sc0000049:836220..837654 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004977 ID=TCONS_00004977|Name=TCONS_00004977|organism=Clytia hemisphaerica|type=transcript|length=1435bp|location=Sequence derived from alignment at sc0000049:836220..837654 (Clytia hemisphaerica)
CACTCACTACTAAACAAAGATATCTGGGACGCTGCAGAAATAGCACCATT
TCTAACACACGTTACCGACACAACGTTGAATTCCATAACTGAAGAAGAAA
TAGAAACCACAGGAAGTGTAATCATTCCAACGAGCATTGTAGATCCGAAG
TCACTAAAGAATCAAAACTTCCTGGTAGTCCCCGATATCGAAGAAGAAGC
GATAATTGGGACAGACATCTTAAGTGCTGAGAAAGCCATCATCAATTTTC
AGGAGAAGAGCATTACAAGCGGGAACAAGAAAACAATtttccagaaaagt
aacaatCGAGAAGGAGTATCAAAATGCTGGATTGGCCTGGGAATTTTAGC
TGCGATAGCGGTTACGGCCTTGGGTACCGTTTACGGGTTGACCTTTATGA
AACAAAATGTACACGAAGGAAAGGAAATTGACGGAAATCTCACACGAAAC
TTTGTAGAAGTCCCAACTACCCTCATGATCAAAACCGGAAAAGTATTATC
AAAATGGACCAAGCACGTGGTTGTGCTTGAATTCCCGCTGCCCAAAATAC
TATACCCTTTCCTGAAGAAGACAGACACGAGAATGGTATTGGGAATAATT
GTAGGTAGCGGACAAAGGGTTAACGCAACGGAAGAGTTCCAGAGGCTCAA
TGCAAAATGCCGTTTGCGGATActccattgaataaaagaagcaACGAAGA
AAATGTAAATAGATGTAAATAACCTTAATGTTTTGATGTTCAAAATTGTG
TTTCAAACTACAAACTAAACCGCACTTATATCACTATGGTAAAAACTCAT
TAATTTTAAAGGAGTTGTAATCATGGTAACCGAAGTACCGCAAAAGTTTG
TACTATATGTAATGTGACGAAACAAAGGAAGCGGTGGAGGAAAGGAAATA
ACAAACGAAATTTTTGTGAGgtatataaaagaaacaaaaaatcattATAT
TTCACGGTTCAACATTCTGATGGTTGACAAGATGGTGCTGCGATTGTCCA
CGCTCAGCTTTCAATTACTTCTGGCGACAGGACGAGTAAATCTAgaaatc
aaaatggataaaattaTGTCACAGAAGCAACAGGCCATGCTGTTAAAGAA
AATACGAGTCGACCTCACGATGAGCGATCAATCAAGAAAGAAGGAAAGAT
GGTTGAACTACACAATCACAAGAATTCGCTTTCAATTTATACAGCTGAAG
ATAGCACCCTGTATCAAACTGCAAAGGGATATAATAAACACAAAACCCCA
ACTTATTCTTTCGTATTTTGGAAGGATGCACAGTGAGATAATCTTGACAA
GACTTAGAAGAAGATCACCCAAAGAAGCAAGCAGTATCAGGGAAGAAGAC
CGCCGACTAGATATCTTAATACGTTTGACAACAGAAGAATACAGAGCTGA
TTATCTTCGACGAATGGGATTGAGGAAAGAAAANN Coding sequence (CDS) from alignment at sc0000049:836220..837654 >TCONS_00004977 ID=TCONS_00004977|Name=TCONS_00004977|organism=Clytia hemisphaerica|type=CDS|length=681bp|location=Sequence derived from alignment at sc0000049:836220..837654 (Clytia hemisphaerica)
CACTCACTACTAAACAAAGATATCTGGGACGCTGCAGAAATAGCACCATT
TCTAACACACGTTACCGACACAACGTTGAATTCCATAACTGAAGAAGAAA
TAGAAACCACAGGAAGTGTAATCATTCCAACGAGCATTGTAGATCCGAAG
TCACTAAAGAATCAAAACTTCCTGGTAGTCCCCGATATCGAAGAAGAAGC
GATAATTGGGACAGACATCTTAAGTGCTGAGAAAGCCATCATCAATTTTC
AGGAGAAGAGCATTACAAGCGGGAACAAGAAAACAATtttccagaaaagt
aacaatCGAGAAGGAGTATCAAAATGCTGGATTGGCCTGGGAATTTTAGC
TGCGATAGCGGTTACGGCCTTGGGTACCGTTTACGGGTTGACCTTTATGA
AACAAAATGTACACGAAGGAAAGGAAATTGACGGAAATCTCACACGAAAC
TTTGTAGAAGTCCCAACTACCCTCATGATCAAAACCGGAAAAGTATTATC
AAAATGGACCAAGCACGTGGTTGTGCTTGAATTCCCGCTGCCCAAAATAC
TATACCCTTTCCTGAAGAAGACAGACACGAGAATGGTATTGGGAATAATT
GTAGGTAGCGGACAAAGGGTTAACGCAACGGAAGAGTTCCAGAGGCTCAA
TGCAAAATGCCGTTTGCGGATActccattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004977-exon-sc0000049-1491911889:836220..837654 | TCONS_00004977-exon-sc0000049-1491911889:836220..837654 | Clytia hemisphaerica | exon |
| TCONS_00004977-exon-sc0000049-1510915933:836220..837654 | TCONS_00004977-exon-sc0000049-1510915933:836220..837654 | Clytia hemisphaerica | exon |
| TCONS_00004977-exon-sc0000049-1575043694:836220..837654 | TCONS_00004977-exon-sc0000049-1575043694:836220..837654 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:836220..837654 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
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