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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004976 ID=TCONS_00004976|Name=TCONS_00004976|organism=Clytia hemisphaerica|type=transcript|length=1731bp
NNTGATATCTTTCCATAGGTCGTTGCTCATAGCGCTGATCGCTGCACCAC
TGTCAATTAAGAATTGGCATGATCGTCCCAAGAGCTTTCCCCACATGCGG
ACTGACGTCGCTGTGCCACTTGCAAACGTAACTGTCACCTGTGACTTTGA
TGTCTTTTCACCGCATGGTGGCTCCTCTCGACAACCGTCTTTCTTTTTGT
CTGAATTCTTCTCTTCTGGTTGAGCAGGACCTCCTGTCTGGAATGAATTT
GTCCTTTCTGTTCCGCGAACTACGTTGAGGACCGACTGTGGTGTACTAAT
ATCTTCTTCGTTCCTCCTCTCCGACATGTCTTTTGGGATGAAAGGTTCGT
CTAACGGTACCTCTTTCCATGGAGCCNNNNNNNNNNCCGCGAACTACGTT
GAGGACCGACTGTGGTGTACTAATATCTTCTTCGTTCCTCCTCTCCGACA
TGTCTTTTGGGATGAAAGGTTCGTCTAACGGTACCTCTTTCCATGGAGCC
ATGATTTGTTTCATTCCATTGTCGTCGTTTATTAATATCTCCACAAATGA
GTTATGTAGGGATCCCTCAGTGGAACAGGAGTTGGAGCAGAGCCCAGGGA
TTGTGTCTCTTTCATAACTTCTGGAAGGTTCGTGGGGACCACTAAGGTTT
GGAGGTGTACCAATGTCCATTAGAGCTGTTTCAGGGGGTAGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGACCGGGA
AGGGAATCATTATTATTTCCTGGGGTCATATGGGTTTCCTCTATGCAGAC
AGCAATTTCATTAACGTCGAGGTTTGGTAACACGTCGACTTCCCGAAGAG
TTTGGAATTCTTTCAGCATGTCCACGCCGGGCTCCTCGTCACTTAGCATA
GGGATTTCCTCACTACCATAGTTAATTGCGTCCTCAGGAAAGATAGGTGC
ATTTAGATCGGGAATGGCTGCTTGGTTGAAATTCATTGGTGGCGGCGCAT
CCATCTGGTGATCTCGATCGGCTGCTTGCAGCTGCCCCATCAAGTTGAAT
GAATCTCTCTTCCTAGGGTATGTGATACTCTTACCATTTGCCTCATTTCT
CAGGTATTGGACTTGTTGGCGCTGCTGATGGTGCTGTTGCTGAGGTGTTG
GACCTGTTATTGCTGGCGTTCGGGTTGCCATGTAACGGCGCCCGTCAGTG
ATTGGGATCCTTGGGTCTCGACCTCCACTATCCTGTCTGTACATAAGGgc
gttgctgttgttgttgttattattgttgttgttgttgttcccGGTATAAT
TATGGTTGCCATATCGTCCGCCTCGAAAGTCGGTATACTGTTGATAATCG
TACCTCCGATCATACTGTCTTGGTCCTCCTCCTTGAATTTCTTGGCAATA
TTTGCTTATGTGACCAACTCTCCTACACTGGTTGCAAATTGGCTGCCCAT
CCACCGTTCTCTCATATTTGGTTTTGAAGCCAATTCTCCTATCTTGAGGG
GGTCTGTTTCGTCGTCGCTTGAGGTCCTTGATTTCGTTCTTCATTCGTTC
GATCTCCCTCATTGCGTCTGTTGTTGACGCAAAGTTTGGATGGCCAAATG
TGTTGATTGGCTGAGGTACCACAATTTGTAGCTTCTGTTCGAGCAGTTCG
GAGATTTTATCGTCCAAGTCTCTTCCGTCATCGGGGTAGTCATCAAACGA
TACTCGTTTTCGTGGTGCATTGGCAGATTGN Run BLAST on NCBI protein sequence of TCONS_00004976-protein >TCONS_00004976-protein ID=TCONS_00004976-protein|Name=TCONS_00004976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=349bp
QSANAPRKRVSFDDYPDDGRDLDDKISELLEQKLQIVVPQPINTFGHPNF
ASTTDAMREIERMKNEIKDLKRRRNRPPQDRRIGFKTKYERTVDGQPICN
QCRRVGHISKYCQEIQGGGPRQYDRRYDYQQYTDFRGGRYGNHNYTGNNN
NNNNNNNNSNALMYRQDSGGRDPRIPITDGRRYMATRTPAITGPTPQQQH
HQQRQQVQYLRNEANGKSITYPRKRDSFNLMGQLQAADRDHQMDAPPPMN
FNQAAIPDLNAPIFPEDAINYGSEEIPMLSDEEPGVDMLKEFQTLREVDV
LPNLDVNEIAVCIEETHMTPGNNNDSLPGLXXXXXXXXXXXXXXXXPTP Run BLAST on NCBI transcript from alignment at sc0000049:827014..828744 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004976 ID=TCONS_00004976|Name=TCONS_00004976|organism=Clytia hemisphaerica|type=transcript|length=1731bp|location=Sequence derived from alignment at sc0000049:827014..828744 (Clytia hemisphaerica)
NCAATCTGCCAATGCACCACGAAAACGAGTATCGTTTGATGACTACCCCG
ATGACGGAAGAGACTTGGACGATAAAATCTCCGAACTGCTCGAACAGAAG
CTACAAATTGTGGTACCTCAGCCAATCAACACATTTGGCCATCCAAACTT
TGCGTCAACAACAGACGCAATGAGGGAGATCGAACGAATGAAGAACGAAA
TCAAGGACCTCAAGCGACGACGAAACAGACCCCCTCAAGATAGGAGAATT
GGCTTCAAAACCAAATATGAGAGAACGGTGGATGGGCAGCCAATTTGCAA
CCAGTGTAGGAGAGTTGGTCACATAAGCAAATATTGCCAAGAAATTCAAG
GAGGAGGACCAAGACAGTATGATCGGAGGTACGATTATCAACAGTATACC
GACTTTCGAGGCGGACGATATGGCAACCATAATTATACCgggaacaacaa
caacaacaataataacaacaacaacagcaacgcCCTTATGTACAGACAGG
ATAGTGGAGGTCGAGACCCAAGGATCCCAATCACTGACGGGCGCCGTTAC
ATGGCAACCCGAACGCCAGCAATAACAGGTCCAACACCTCAGCAACAGCA
CCATCAGCAGCGCCAACAAGTCCAATACCTGAGAAATGAGGCAAATGGTA
AGAGTATCACATACCCTAGGAAGAGAGATTCATTCAACTTGATGGGGCAG
CTGCAAGCAGCCGATCGAGATCACCAGATGGATGCGCCGCCACCAATGAA
TTTCAACCAAGCAGCCATTCCCGATCTAAATGCACCTATCTTTCCTGAGG
ACGCAATTAACTATGGTAGTGAGGAAATCCCTATGCTAAGTGACGAGGAG
CCCGGCGTGGACATGCTGAAAGAATTCCAAACTCTTCGGGAAGTCGACGT
GTTACCAAACCTCGACGTTAATGAAATTGCTGTCTGCATAGAGGAAACCC
ATATGACCCCAGGAAATAATAATGATTCCCTTCCCGGTCTAANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTACCCCCTG
AAACAGCTCTAATGGACATTGGTACACCTCCAAACCTTAGTGGTCCCCAC
GAACCTTCCAGAAGTTATGAAAGAGACACAATCCCTGGGCTCTGCTCCAA
CTCCTGTTCCACTGAGGGATCCCTACATAACTCATTTGTGGAGATATTAA
TAAACGACGACAATGGAATGAAACAAATCATGGCTCCATGGAAAGAGGTA
CCGTTAGACGAACCTTTCATCCCAAAAGACATGTCGGAGAGGAGGAACGA
AGAAGATATTAGTACACCACAGTCGGTCCTCAACGTAGTTCGCGGNNNNN
NNNNNGGCTCCATGGAAAGAGGTACCGTTAGACGAACCTTTCATCCCAAA
AGACATGTCGGAGAGGAGGAACGAAGAAGATATTAGTACACCACAGTCGG
TCCTCAACGTAGTTCGCGGAACAGAAAGGACAAATTCATTCCAGACAGGA
GGTCCTGCTCAACCAGAAGAGAAGAATTCAGACAAAAAGAAAGACGGTTG
TCGAGAGGAGCCACCATGCGGTGAAAAGACATCAAAGTCACAGGTGACAG
TTACGTTTGCAAGTGGCACAGCGACGTCAGTCCGCATGTGGGGAAAGCTC
TTGGGACGATCATGCCAATTCTTAATTGACAGTGGTGCAGCGATCAGCGC
TATGAGCAACGACCTATGGAAAGATATCANN Coding sequence (CDS) from alignment at sc0000049:827014..828744 >TCONS_00004976 ID=TCONS_00004976|Name=TCONS_00004976|organism=Clytia hemisphaerica|type=CDS|length=1050bp|location=Sequence derived from alignment at sc0000049:827014..828744 (Clytia hemisphaerica)
CAATCTGCCAATGCACCACGAAAACGAGTATCGTTTGATGACTACCCCGA
TGACGGAAGAGACTTGGACGATAAAATCTCCGAACTGCTCGAACAGAAGC
TACAAATTGTGGTACCTCAGCCAATCAACACATTTGGCCATCCAAACTTT
GCGTCAACAACAGACGCAATGAGGGAGATCGAACGAATGAAGAACGAAAT
CAAGGACCTCAAGCGACGACGAAACAGACCCCCTCAAGATAGGAGAATTG
GCTTCAAAACCAAATATGAGAGAACGGTGGATGGGCAGCCAATTTGCAAC
CAGTGTAGGAGAGTTGGTCACATAAGCAAATATTGCCAAGAAATTCAAGG
AGGAGGACCAAGACAGTATGATCGGAGGTACGATTATCAACAGTATACCG
ACTTTCGAGGCGGACGATATGGCAACCATAATTATACCgggaacaacaac
aacaacaataataacaacaacaacagcaacgcCCTTATGTACAGACAGGA
TAGTGGAGGTCGAGACCCAAGGATCCCAATCACTGACGGGCGCCGTTACA
TGGCAACCCGAACGCCAGCAATAACAGGTCCAACACCTCAGCAACAGCAC
CATCAGCAGCGCCAACAAGTCCAATACCTGAGAAATGAGGCAAATGGTAA
GAGTATCACATACCCTAGGAAGAGAGATTCATTCAACTTGATGGGGCAGC
TGCAAGCAGCCGATCGAGATCACCAGATGGATGCGCCGCCACCAATGAAT
TTCAACCAAGCAGCCATTCCCGATCTAAATGCACCTATCTTTCCTGAGGA
CGCAATTAACTATGGTAGTGAGGAAATCCCTATGCTAAGTGACGAGGAGC
CCGGCGTGGACATGCTGAAAGAATTCCAAACTCTTCGGGAAGTCGACGTG
TTACCAAACCTCGACGTTAATGAAATTGCTGTCTGCATAGAGGAAACCCA
TATGACCCCAGGAAATAATAATGATTCCCTTCCCGGTCTAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTACCCCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004976-exon-sc0000049-1491911889:827014..828744 | TCONS_00004976-exon-sc0000049-1491911889:827014..828744 | Clytia hemisphaerica | exon |
| TCONS_00004976-exon-sc0000049-1510915933:827014..828744 | TCONS_00004976-exon-sc0000049-1510915933:827014..828744 | Clytia hemisphaerica | exon |
| TCONS_00004976-exon-sc0000049-1575043694:827014..828744 | TCONS_00004976-exon-sc0000049-1575043694:827014..828744 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:827014..828744 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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