TCONS_00004970 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004970
Unique NameTCONS_00004970
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004970 ID=TCONS_00004970|Name=TCONS_00004970|organism=Clytia hemisphaerica|type=transcript|length=492bp
ATTTTTAAAGAATAAGACAAACACGAAAGTCTCGACAAAAAGTTGTTTAA
CCGTTAAACTAAGGTTGAGTTGGCCGTAACTTGACCTAGTATACTAAAGC
CCACAAAGGCAGAATCTCCAATGAATATTTGAGATGATATCTTCCTAAAA
AGTTAAATGTAATTAAGTAACTATACAAACGTTGATACAATTTACAAACT
ATATACAAAGGACCTGGCGCAAATTAACTGGAATAAAGTAAAAGTTCCCC
CTGCTTTTGAACCATTGTTCCAAGATGAGTTTCTCAAGCCCCTTACCTTA
CTTGCCCCTTAGTTGAGCCAGATACTTTGTATCTTCAATGATACATAAAA
TGAGgtacaaaatattaaaataaaattacaaGCTTAAACATATCCACAAA
GGTTTAACCAGTCTACATGACAGTACATAGTTCGCATAGTTCTCAATCTA
CGGTTagtcttcattttgaaaaacctGTTCGTATCTGCCACA
Run BLAST on NCBI

transcript from alignment at sc0000049:703636..704127

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004970 ID=TCONS_00004970|Name=TCONS_00004970|organism=Clytia hemisphaerica|type=transcript|length=492bp|location=Sequence derived from alignment at sc0000049:703636..704127 (Clytia hemisphaerica)
TGTGGCAGATACGAACaggtttttcaaaatgaagactAACCGTAGATTGA
GAACTATGCGAACTATGTACTGTCATGTAGACTGGTTAAACCTTTGTGGA
TATGTTTAAGCttgtaattttattttaatattttgtacCTCATTTTATGT
ATCATTGAAGATACAAAGTATCTGGCTCAACTAAGGGGCAAGTAAGGTAA
GGGGCTTGAGAAACTCATCTTGGAACAATGGTTCAAAAGCAGGGGGAACT
TTTACTTTATTCCAGTTAATTTGCGCCAGGTCCTTTGTATATAGTTTGTA
AATTGTATCAACGTTTGTATAGTTACTTAATTACATTTAACTTTTTAGGA
AGATATCATCTCAAATATTCATTGGAGATTCTGCCTTTGTGGGCTTTAGT
ATACTAGGTCAAGTTACGGCCAACTCAACCTTAGTTTAACGGTTAAACAA
CTTTTTGTCGAGACTTTCGTGTTTGTCTTATTCTTTAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002818XLOC_002818Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004970-exon-sc0000049-1491911889:703636..704127TCONS_00004970-exon-sc0000049-1491911889:703636..704127Clytia hemisphaericaexon
TCONS_00004970-exon-sc0000049-1510915933:703636..704127TCONS_00004970-exon-sc0000049-1510915933:703636..704127Clytia hemisphaericaexon
TCONS_00004970-exon-sc0000049-1575043694:703636..704127TCONS_00004970-exon-sc0000049-1575043694:703636..704127Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:703636..704127 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.125363	0.366746	0	0.138869	0.169059	0	0.161174	0.452667	0.316923	0	0.12701	0.166982	0.250125	0.173172	0.142371	0.534749	7.24644	2.02564	1.99896	0.557803	18.1812	20.042	13.6552	16.2043	3.09573	6.48672	0.343795	0.550361	0.41743	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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