TCONS_00004969 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004969
Unique NameTCONS_00004969
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length536

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004969 ID=TCONS_00004969|Name=TCONS_00004969|organism=Clytia hemisphaerica|type=transcript|length=536bp
CCTTCAACAAATATCCATCAATGGCAACAACTTGTTAATTTTCTACGACA
ATGGTTGCAGCGATTTCGTTGTCAGCAAGAAAGCAATAGAGCTACTCGGC
AGCAAAGCAAAGAAGATATCATCCGAACCGGTCATACTTGGTGGCGTTGG
TGAATGTCAAACCAAATCGTTGAATGGAATCTTCAGTGTCACTATCCCAC
TTCACGATGATAAAGAAGTCACGTTCTCCGGTGTTTGTCTCGATCGTATC
ACATCTACATTCCCAACATATCCATTAGAAGTCGTCGAACAAGACATCAT
TGACTATCACATCTCATCAGGAGGAACCAGTCCAATTCCAAAGCTTCCAA
ACAACATTGGTGGTGAAGTGCATATGATGATTGGAGTCAAATACCTTCGT
CATCACCCAAAAATGGTCATCCAACTCCCATCAGGTCTTGCATTGTACGA
ATCGAAATTCAACAATTCAACTGGGGGAAGAGGAGTGGTCGGTGGACCAC
ATCACAGCTTCACCAAAATTCATCAGCAATTCAACA
Run BLAST on NCBI

protein sequence of TCONS_00004969-protein

>TCONS_00004969-protein ID=TCONS_00004969-protein|Name=TCONS_00004969-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
LQQISINGNNLLIFYDNGCSDFVVSKKAIELLGSKAKKISSEPVILGGVG
ECQTKSLNGIFSVTIPLHDDKEVTFSGVCLDRITSTFPTYPLEVVEQDII
DYHISSGGTSPIPKLPNNIGGEVHMMIGVKYLRHHPKMVIQLPSGLALYE
SKFNNSTGGRGVVGGPHHSFTKIHQQFN
Run BLAST on NCBI

transcript from alignment at sc0000049:680488..681023

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004969 ID=TCONS_00004969|Name=TCONS_00004969|organism=Clytia hemisphaerica|type=transcript|length=536bp|location=Sequence derived from alignment at sc0000049:680488..681023 (Clytia hemisphaerica)
TGTTGAATTGCTGATGAATTTTGGTGAAGCTGTGATGTGGTCCACCGACC
ACTCCTCTTCCCCCAGTTGAATTGTTGAATTTCGATTCGTACAATGCAAG
ACCTGATGGGAGTTGGATGACCATTTTTGGGTGATGACGAAGGTATTTGA
CTCCAATCATCATATGCACTTCACCACCAATGTTGTTTGGAAGCTTTGGA
ATTGGACTGGTTCCTCCTGATGAGATGTGATAGTCAATGATGTCTTGTTC
GACGACTTCTAATGGATATGTTGGGAATGTAGATGTGATACGATCGAGAC
AAACACCGGAGAACGTGACTTCTTTATCATCGTGAAGTGGGATAGTGACA
CTGAAGATTCCATTCAACGATTTGGTTTGACATTCACCAACGCCACCAAG
TATGACCGGTTCGGATGATATCTTCTTTGCTTTGCTGCCGAGTAGCTCTA
TTGCTTTCTTGCTGACAACGAAATCGCTGCAACCATTGTCGTAGAAAATT
AACAAGTTGTTGCCATTGATGGATATTTGTTGAAGG

Coding sequence (CDS) from alignment at sc0000049:680488..681023

>TCONS_00004969 ID=TCONS_00004969|Name=TCONS_00004969|organism=Clytia hemisphaerica|type=CDS|length=534bp|location=Sequence derived from alignment at sc0000049:680488..681023 (Clytia hemisphaerica)
GTTGAATTGCTGATGAATTTTGGTGAAGCTGTGATGTGGTCCACCGACCA
CTCCTCTTCCCCCAGTTGAATTGTTGAATTTCGATTCGTACAATGCAAGA
CCTGATGGGAGTTGGATGACCATTTTTGGGTGATGACGAAGGTATTTGAC
TCCAATCATCATATGCACTTCACCACCAATGTTGTTTGGAAGCTTTGGAA
TTGGACTGGTTCCTCCTGATGAGATGTGATAGTCAATGATGTCTTGTTCG
ACGACTTCTAATGGATATGTTGGGAATGTAGATGTGATACGATCGAGACA
AACACCGGAGAACGTGACTTCTTTATCATCGTGAAGTGGGATAGTGACAC
TGAAGATTCCATTCAACGATTTGGTTTGACATTCACCAACGCCACCAAGT
ATGACCGGTTCGGATGATATCTTCTTTGCTTTGCTGCCGAGTAGCTCTAT
TGCTTTCTTGCTGACAACGAAATCGCTGCAACCATTGTCGTAGAAAATTA
ACAAGTTGTTGCCATTGATGGATATTTGTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002817XLOC_002817Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004969-proteinTCONS_00004969-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004969-exon-sc0000049-1491911889:680488..681023TCONS_00004969-exon-sc0000049-1491911889:680488..681023Clytia hemisphaericaexon
TCONS_00004969-exon-sc0000049-1510915933:680488..681023TCONS_00004969-exon-sc0000049-1510915933:680488..681023Clytia hemisphaericaexon
TCONS_00004969-exon-sc0000049-1575043694:680488..681023TCONS_00004969-exon-sc0000049-1575043694:680488..681023Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:680488..681023 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.322453	1.63665	1.11613	0.742582	0.577422	0.335932	0.940507	0.161138	0.390518	0.692738	1.20912	0.556198	0.232054	0.944707	0.620888	1.12573	0.157385	1.00404	0	0	0.507821	0.193061	0.146943	0.390737	0.651035	0.74566	0.986839	0.386274	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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