TCONS_00004966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004966
Unique NameTCONS_00004966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004966 ID=TCONS_00004966|Name=TCONS_00004966|organism=Clytia hemisphaerica|type=transcript|length=276bp
CCCCCTCCAATAAACGCCCCTTCTAAAGACTAAACAATTTTCATAAACTC
CCgggacgtttattcgaagtaatacggtattcaTATTAATAAGGAAACTT
TTGAATTACATAGGAGAATGACTGACACGATGGTCAGTCgaatagttttt
atttttatagaaattgaaatttataGATTTTTAGATTATTTATAGCGTAG
ATTATTTTTGGTGATAATGTGTAACTGTGTAAACAACgtgttttaaattt
tatattatGAAAACAAATTGTTGCAC
Run BLAST on NCBI

transcript from alignment at sc0000049:661139..661414

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004966 ID=TCONS_00004966|Name=TCONS_00004966|organism=Clytia hemisphaerica|type=transcript|length=276bp|location=Sequence derived from alignment at sc0000049:661139..661414 (Clytia hemisphaerica)
GTGCAACAATTTGTTTTCataatataaaatttaaaacacGTTGTTTACAC
AGTTACACATTATCACCAAAAATAATCTACGCTATAAATAATCTAAAAAT
CtataaatttcaatttctataaaaataaaaactattcGACTGACCATCGT
GTCAGTCATTCTCCTATGTAATTCAAAAGTTTCCTTATTAATAtgaatac
cgtattacttcgaataaacgtcccGGGAGTTTATGAAAATTGTTTAGTCT
TTAGAAGGGGCGTTTATTGGAGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002814XLOC_002814Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004966-exon-sc0000049-1491911889:661139..661414TCONS_00004966-exon-sc0000049-1491911889:661139..661414Clytia hemisphaericaexon
TCONS_00004966-exon-sc0000049-1510915933:661139..661414TCONS_00004966-exon-sc0000049-1510915933:661139..661414Clytia hemisphaericaexon
TCONS_00004966-exon-sc0000049-1575043694:661139..661414TCONS_00004966-exon-sc0000049-1575043694:661139..661414Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:661139..661414 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.60715	1.01695	2.95194	4.62083	5.62541	2.22264	4.69266	6.27601	0	2.72133	0	0.694538	1.38714	1.44056	0.296085	0.953233	1.56574	1.20362	1.10858	0.580025	4.53733	2.95086	7.17432	10.8708	2.23934	2.4982	2.85993	1.5261	4.05122	4.7172
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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