TCONS_00004965 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004965
Unique NameTCONS_00004965
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1058

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004965 ID=TCONS_00004965|Name=TCONS_00004965|organism=Clytia hemisphaerica|type=transcript|length=1058bp
CAAAATTATCGAATTTCAGGTCGCTCGCAATACTACCCCaacattgttat
ttttttgacaCTGTAGTAGTAATGTCATGAAAAAGTTTGAGTAGAAGTAT
ATAGCatcaagaaaaataattttgttggttGGTTTGTGTATGAAGCTATT
CTAAGAATCTAAGGAAGTTGTGTTGTGGTGTTGTACAATACCTTCGTGTA
AAGATTTTTTCTGTTGCTACTTTTTGTTTCCATCACAGAAAGTAAAAACT
TTCTTAGAAGAGAGAAGGATATATTTCAGTGCGTGCAAAAATGGTTTTAT
CAACTTTACGTGGAGTGCTGGCCAGACGTCCGTTATTAAAAAGTGTTGTC
ACAGTTACAAGTTTGATCACAGCAGCTGATATAAGTTGCCAGTTGATCGA
GAATAAAGGTGAAACTTTCAATTGGATTCGATTACGTAACATGATGAGCA
TCGGTGTCTGTTACTATGGGCCGTTCTATTATTACTACTACGGTATGCTT
GATCGTAAACTACCCGGTAAAAACCCTCGCACCATTGCTTTGAAATTATT
GATCGACCAAGTGGTAGTCACCATACCAAGTCTAGCCATCTTTTACGTTT
TTATCAGCGCTATTGAAGGAAAAAATATTGAGGAAACGAAAACGGAACTT
CGCAGTAAATTCTTACCGACGTACGCAACGGCCTGTTGCTTTTGGCCGGG
TATACAAGCCTTAAACTTTGCGCTGGTGCCACCGCAATACCGTGTCCTGA
TGGTGTCAACTTCCACCTTTGTGTGGTTGACCTTCCTTTCGTATGTCAAG
AACCGACCAAAACTTCCCTACTTGTTCGTCAAAATCAATGAACTGACAGG
CGTTCAAACCACTGAAGTTGAAGGATAATTCAATTTGCGTTTCGATGTAC
GACTTTCCAATGAATATACTTAAACTtgagtccaaaaaaaaacaatagca
AAGTAAATTTGGAcagtttttagtaaaaattttgaatttttgtaaatttt
ctaaatttaataGATATATTGATAGATATTATAGGCATacattatgtttt
gttttttt
Run BLAST on NCBI

protein sequence of TCONS_00004965-protein

>TCONS_00004965-protein ID=TCONS_00004965-protein|Name=TCONS_00004965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MVLSTLRGVLARRPLLKSVVTVTSLITAADISCQLIENKGETFNWIRLRN
MMSIGVCYYGPFYYYYYGMLDRKLPGKNPRTIALKLLIDQVVVTIPSLAI
FYVFISAIEGKNIEETKTELRSKFLPTYATACCFWPGIQALNFALVPPQY
RVLMVSTSTFVWLTFLSYVKNRPKLPYLFVKINELTGVQTTEVEG
Run BLAST on NCBI

transcript from alignment at sc0000049:638821..639878

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004965 ID=TCONS_00004965|Name=TCONS_00004965|organism=Clytia hemisphaerica|type=transcript|length=1058bp|location=Sequence derived from alignment at sc0000049:638821..639878 (Clytia hemisphaerica)
aaaaaaacaaaacataatgtATGCCTATAATATCTATCAATATATCtatt
aaatttagaaaatttacaaaaattcaaaatttttactaaaaactgTCCAA
ATTTACTTtgctattgtttttttttggactcaAGTTTAAGTATATTCATT
GGAAAGTCGTACATCGAAACGCAAATTGAATTATCCTTCAACTTCAGTGG
TTTGAACGCCTGTCAGTTCATTGATTTTGACGAACAAGTAGGGAAGTTTT
GGTCGGTTCTTGACATACGAAAGGAAGGTCAACCACACAAAGGTGGAAGT
TGACACCATCAGGACACGGTATTGCGGTGGCACCAGCGCAAAGTTTAAGG
CTTGTATACCCGGCCAAAAGCAACAGGCCGTTGCGTACGTCGGTAAGAAT
TTACTGCGAAGTTCCGTTTTCGTTTCCTCAATATTTTTTCCTTCAATAGC
GCTGATAAAAACGTAAAAGATGGCTAGACTTGGTATGGTGACTACCACTT
GGTCGATCAATAATTTCAAAGCAATGGTGCGAGGGTTTTTACCGGGTAGT
TTACGATCAAGCATACCGTAGTAGTAATAATAGAACGGCCCATAGTAACA
GACACCGATGCTCATCATGTTACGTAATCGAATCCAATTGAAAGTTTCAC
CTTTATTCTCGATCAACTGGCAACTTATATCAGCTGCTGTGATCAAACTT
GTAACTGTGACAACACTTTTTAATAACGGACGTCTGGCCAGCACTCCACG
TAAAGTTGATAAAACCATTTTTGCACGCACTGAAATATATCCTTCTCTCT
TCTAAGAAAGTTTTTACTTTCTGTGATGGAAACAAAAAGTAGCAACAGAA
AAAATCTTTACACGAAGGTATTGTACAACACCACAACACAACTTCCTTAG
ATTCTTAGAATAGCTTCATACACAAACCaaccaacaaaattatttttctt
gatGCTATATACTTCTACTCAAACTTTTTCATGACATTACTACTACAGtg
tcaaaaaaataacaatgttGGGGTAGTATTGCGAGCGACCTGAAATTCGA
TAATTTTG

Coding sequence (CDS) from alignment at sc0000049:638821..639878

>TCONS_00004965 ID=TCONS_00004965|Name=TCONS_00004965|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at sc0000049:638821..639878 (Clytia hemisphaerica)
TTATCCTTCAACTTCAGTGGTTTGAACGCCTGTCAGTTCATTGATTTTGA
CGAACAAGTAGGGAAGTTTTGGTCGGTTCTTGACATACGAAAGGAAGGTC
AACCACACAAAGGTGGAAGTTGACACCATCAGGACACGGTATTGCGGTGG
CACCAGCGCAAAGTTTAAGGCTTGTATACCCGGCCAAAAGCAACAGGCCG
TTGCGTACGTCGGTAAGAATTTACTGCGAAGTTCCGTTTTCGTTTCCTCA
ATATTTTTTCCTTCAATAGCGCTGATAAAAACGTAAAAGATGGCTAGACT
TGGTATGGTGACTACCACTTGGTCGATCAATAATTTCAAAGCAATGGTGC
GAGGGTTTTTACCGGGTAGTTTACGATCAAGCATACCGTAGTAGTAATAA
TAGAACGGCCCATAGTAACAGACACCGATGCTCATCATGTTACGTAATCG
AATCCAATTGAAAGTTTCACCTTTATTCTCGATCAACTGGCAACTTATAT
CAGCTGCTGTGATCAAACTTGTAACTGTGACAACACTTTTTAATAACGGA
CGTCTGGCCAGCACTCCACGTAAAGTTGATAAAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002813XLOC_002813Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004965-proteinTCONS_00004965-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004965-exon-sc0000049-1491911889:638821..639878TCONS_00004965-exon-sc0000049-1491911889:638821..639878Clytia hemisphaericaexon
TCONS_00004965-exon-sc0000049-1510915933:638821..639878TCONS_00004965-exon-sc0000049-1510915933:638821..639878Clytia hemisphaericaexon
TCONS_00004965-exon-sc0000049-1575043694:638821..639878TCONS_00004965-exon-sc0000049-1575043694:638821..639878Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:638821..639878 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0835754	0.122249	0.189257	0.277737	18.4838	15.2741	34.921	37.4708	15.4236	11.4279	9.14469	8.26562	6.89234	7.64841	10.132	12.4265	10.7285	10.8356	2.13222	3.02144	16.1207	16.7313	15.955	12.0225	7.85148	5.4056	5.15693	5.44246	22.031	16.2557
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00004965 vs. Swiss-Prot (Human)
Match: MP17L (Mpv17-like protein OS=Homo sapiens GN=MPV17L PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.529e-22
Identity = 53/160 (33.12%), Postives = 89/160 (55.62%), Query Frame = 3 
Query:  324 RRPLLKSVVTVTSLITAADISCQLIENKGETFNWIRLRNMMSIGVCXXXXXXXXXXXMLDRKLPGKNPRTIALKLLIDQVVVTIPSLAIFYVFISAIEGKNIEETKTELRSKFLPTYATACCFWPGIQALNFALVPPQYRVLMVSTSTFVWLTFLSYVKN 803
            R P   +V+   SL++A D   Q ++  G   NW + R + ++ V ++  F Y +  +L+R LPG+ P  +  KLL DQVV    +++ FYV +S ++GK  ++   +L+ KF  TY +   +WP +Q  NF+LVP Q+R        F+W TF+ + + 
Sbjct:   14 RHPWPTNVLLYGSLVSAGDALQQRLQ--GREANWRQTRRVATLVVTFHANFNYVWLRLLERALPGRAPHALLAKLLCDQVVGAPIAVSAFYVGMSILQGK--DDIFLDLKQKFWNTYLSGLMYWPFVQLTNFSLVPVQWRTAYAGVCGFLWATFICFSQQ 169
The following BLAST results are available for this feature:
BLAST of TCONS_00004965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MP17L5.529e-2233.13Mpv17-like protein OS=Homo sapiens GN=MPV17L PE=1 ... [more]
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