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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004959 ID=TCONS_00004959|Name=TCONS_00004959|organism=Clytia hemisphaerica|type=transcript|length=2204bp
GTCGTCGGTGGGAGGGGGGAGGAAGGAGGATGAAATCATTCTTCACAAGT
AATATACTTTATTATTCTTACAAGCCTCCCCCAGCAGGCGGGGGTATCTT
ATTATTGACCAACATGTATAATCAGCCTCGTATCCGTATATCCCAGGCTT
AACTTATTAAAAACTCATAAAGTTGTTGACTTATACTGTATCCGCATATT
CCAGGCCTAATCTTATCTTCCAgtttaaaacatcaaaaagcaGATAATAC
AAACCAGAGACGACGAAGTTGAcatattcttgtaaaaaaagcgtgtgtAT
CCCACCCCCTGCTTGTCTGCTCAATTTTTAATATTAGGATATGTCAATCT
CATTTTAAGACACTGCCAAAAAACTGTATTTTACCCATGGTtggcttttt
attgtatttgagTTGAGGATCAGCTTTTTCCCAAGGGTCGAGTGGTCGGC
CTTTCTCAAGGGTCAGGGTCAGGCTCGAGGCCGAGGTTGGATTAATATAG
ATTGCCCTCCCGCATTTTGCGAGGTGAAGTTGATGAAAGCGCTATGCTAA
TTGAAGCCTAGTTAAAGGAGTGGTTcggtaaaaatttcattttttaatat
cTGTCTTATTGGATTCTCCTTTTAAAAAGACACACAGAGATATAAACTGT
TAAAAACTAATTGATTATTCGTTTCCTTTAAAAGGCCACTCACTTTTATA
TGCCTTTTAAACGAGACCTTTTGCTGACATCACAGACGCTGTTAAAAACT
GTAGCTGTGTTTACTGAAGTGAATTATAAACCTTTTCCTGGGTAGAAAAG
TGGTTATTTCTGCTAGAAACTGAAGAAAGGAGTGGTTAATTATGATAAAT
TTGTACTATAATCTTTTTGAATACTTGGGTAAATGTATTCTGACTTGGAA
AGCGATATATTCAAGCTATGAAGAATATGATATCAGTGGAAATGAGGCAG
ATTCTGAGAGAGAAAATGATTCTGAGAGAGAGGATGGAGAATGCAAGAGA
GATATGGATCTCCTCATTAACAAGATGAAGACATTTAATCTCTATCTCTA
TGAGCCTGAACGAGAAGTATCGAGTAAGCAAGAGTGACATTTCTTCATCC
AAAGACAAAAAAGACTATGAAACTTGTTCTGAAGGTAGAATTGAGAGTTT
AGGAttgtttcaatgaaaaatttgatcatGGAGACTTTCAGTCCATTATT
GATAGGCAACAATTCCCAAAAATGTCCATCGAATAGATTGCTAAGATACA
TAGCATACAGGCAGTTTTCATGGTGGGTTTTCAAGAGATTGAGAAAAAAT
AATCGCTGAGTTCTCCCATCACCTGAAAAAACTAtggcaaataatttttt
tgattgatgGGTCTGTCAATTCATCCGTTAGTGCAGTGCATTAATAAGTT
CATTTTCCAGTTTGCATTGGATTAACATCCTGAGTTTCATCGATATCGTT
TGGGTTTACTATTTATTCAATTGACACAAGCTTTGTACTAATTGATGATG
TTGGATGGGTCCTTCATGGACCTGAAGTTTAGCCTTTTCTTGTGCTCTCC
TTTCATTCGACTTTCTTTTAGTTGGTTGTTTATCTTTGTTGTGATTGAAC
AAGTTTTGGATAGCGTCTTCCTTAACAGTAGTCTATGCGGCGCAAGCCCT
AGGATGACTTTGTGCTAAAAATACCagcttttggtgttttttttttcttt
agtgtTTCGTCCCTAGGTAGCTTGTACAAAGATACTTTCACTCTTAAGTG
AGCTGTTAGTACATACAGTTCACCATGGtgacaccctcttctcacaaaCC
CGTTGGAATTTTTCAACCAGTTGGGATAGAAAAAAACggactttttttaa
acttgatggggattgatatttccatagttttttaatggcatgggatttca
attcttttgttttcaagtcagagaattcagtggggattggaaaaatagca
taatattttgcagaaaggattggtttatttgattatcatAAAGAATTCTT
TGATTATCTTTAGTGTGGACAAAAATTGAGACATAATTTTCCACTGAGGA
CAATATTCTGGCCAATTTTCTCAGTGGGAAgtggtcccagtgggtctgtg
agaaggggtgtatggtaaaaaaagaagtaaataTCACGAGTCTGAATCCT
ACATCAAGTTCACTTGGAAAACAGTCCAAACTGACTATAAAAGTGGGATA
AAAC Run BLAST on NCBI transcript from alignment at sc0000049:476747..478950 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004959 ID=TCONS_00004959|Name=TCONS_00004959|organism=Clytia hemisphaerica|type=transcript|length=2204bp|location=Sequence derived from alignment at sc0000049:476747..478950 (Clytia hemisphaerica)
GTTTTATCCCACTTTTATAGTCAGTTTGGACTGTTTTCCAAGTGAACTTG
ATGTAGGATTCAGACTCGTGAtatttacttctttttttaccatacacccc
ttctcacagacccactgggaccacTTCCCACTGAGAAAATTGGCCAGAAT
ATTGTCCTCAGTGGAAAATTATGTCTCAATTTTTGTCCACACTAAAGATA
ATCAAAGAATTCTTTatgataatcaaataaaccaatcctttctgcaaaat
attatgctatttttccaatccccactgaattctctgacttgaaaacaaaa
gaattgaaatcccatgccattaaaaaactatggaaatatcaatccccatc
aagtttaaaaaaagtccGTTTTTTTCTATCCCAACTGGTTGAAAAATTCC
AACGGGtttgtgagaagagggtgtcaCCATGGTGAACTGTATGTACTAAC
AGCTCACTTAAGAGTGAAAGTATCTTTGTACAAGCTACCTAGGGACGAAa
cactaaagaaaaaaaaaacaccaaaagctGGTATTTTTAGCACAAAGTCA
TCCTAGGGCTTGCGCCGCATAGACTACTGTTAAGGAAGACGCTATCCAAA
ACTTGTTCAATCACAACAAAGATAAACAACCAACTAAAAGAAAGTCGAAT
GAAAGGAGAGCACAAGAAAAGGCTAAACTTCAGGTCCATGAAGGACCCAT
CCAACATCATCAATTAGTACAAAGCTTGTGTCAATTGAATAAATAGTAAA
CCCAAACGATATCGATGAAACTCAGGATGTTAATCCAATGCAAACTGGAA
AATGAACTTATTAATGCACTGCACTAACGGATGAATTGACAGACCcatca
atcaaaaaaattatttgccaTAGTTTTTTCAGGTGATGGGAGAACTCAGC
GATTATTTTTTCTCAATCTCTTGAAAACCCACCATGAAAACTGCCTGTAT
GCTATGTATCTTAGCAATCTATTCGATGGACATTTTTGGGAATTGTTGCC
TATCAATAATGGACTGAAAGTCTCCatgatcaaatttttcattgaaacaa
TCCTAAACTCTCAATTCTACCTTCAGAACAAGTTTCATAGTCTTTTTTGT
CTTTGGATGAAGAAATGTCACTCTTGCTTACTCGATACTTCTCGTTCAGG
CTCATAGAGATAGAGATTAAATGTCTTCATCTTGTTAATGAGGAGATCCA
TATCTCTCTTGCATTCTCCATCCTCTCTCTCAGAATCATTTTCTCTCTCA
GAATCTGCCTCATTTCCACTGATATCATATTCTTCATAGCTTGAATATAT
CGCTTTCCAAGTCAGAATACATTTACCCAAGTATTCAAAAAGATTATAGT
ACAAATTTATCATAATTAACCACTCCTTTCTTCAGTTTCTAGCAGAAATA
ACCACTTTTCTACCCAGGAAAAGGTTTATAATTCACTTCAGTAAACACAG
CTACAGTTTTTAACAGCGTCTGTGATGTCAGCAAAAGGTCTCGTTTAAAA
GGCATATAAAAGTGAGTGGCCTTTTAAAGGAAACGAATAATCAATTAGTT
TTTAACAGTTTATATCTCTGTGTGTCTTTTTAAAAGGAGAATCCAATAAG
ACAgatattaaaaaatgaaatttttaccgAACCACTCCTTTAACTAGGCT
TCAATTAGCATAGCGCTTTCATCAACTTCACCTCGCAAAATGCGGGAGGG
CAATCTATATTAATCCAACCTCGGCCTCGAGCCTGACCCTGACCCTTGAG
AAAGGCCGACCACTCGACCCTTGGGAAAAAGCTGATCCTCAActcaaata
caataaaaagccaACCATGGGTAAAATACAGTTTTTTGGCAGTGTCTTAA
AATGAGATTGACATATCCTAATATTAAAAATTGAGCAGACAAGCAGGGGG
TGGGATacacacgctttttttacaagaatatgTCAACTTCGTCGTCTCTG
GTTTGTATTATCtgctttttgatgttttaaacTGGAAGATAAGATTAGGC
CTGGAATATGCGGATACAGTATAAGTCAACAACTTTATGAGTTTTTAATA
AGTTAAGCCTGGGATATACGGATACGAGGCTGATTATACATGTTGGTCAA
TAATAAGATACCCCCGCCTGCTGGGGGAGGCTTGTAAGAATAATAAAGTA
TATTACTTGTGAAGAATGATTTCATCCTCCTTCCTCCCCCCTCCCACCGA
CGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004959-exon-sc0000049-1491911889:476747..478950 | TCONS_00004959-exon-sc0000049-1491911889:476747..478950 | Clytia hemisphaerica | exon |
| TCONS_00004959-exon-sc0000049-1510915933:476747..478950 | TCONS_00004959-exon-sc0000049-1510915933:476747..478950 | Clytia hemisphaerica | exon |
| TCONS_00004959-exon-sc0000049-1575043694:476747..478950 | TCONS_00004959-exon-sc0000049-1575043694:476747..478950 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:476747..478950 . |
Blast
The following BLAST results are available for this feature:
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