TCONS_00004958 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004958
Unique NameTCONS_00004958
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length710

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004958 ID=TCONS_00004958|Name=TCONS_00004958|organism=Clytia hemisphaerica|type=transcript|length=710bp
CGTTTCTCGGTTCCGGCATCCTGGCAAGACGTCCATATGAGATAGACCCG
GGCATCCCGAAAAACCTTGACCGTTTATTCACGAAGAATTCCATGCGAAG
ACAACAtcacagaaaaagaaaagataagtaCTTTAGCGGGCcgcttgttt
tcattttagcgGGAATGGCAGCAGCTTCGGTaagattttggtcaaattaT
GAAGACCGTTAAGAAGGTGGGTAGGTATGTTTTGAAagtaacggtctttt
cccgttacgcgtggcgactttgaatatggacgtTGCCCCTTACTGgaaca
tttgtaaaaaaaagagcctttttagtggaaaaacactggaaaaagtgccc
tttttgactaccaacggacgctgccttacctttctaaaatatggcctgca
GAAGAAAGCTAGCTAGACTgtctgattttgattttttttccaggcaGGTT
TTTTTATTCCCCCCCCCCTTCTGAGGGCCTTGAGAGTAATCCAAAAGATA
GTGATTACTGGATAAAGTTAAAGAGAGTGGGTAAAAAAGATTCCACTCGC
TAAAGAaagtataaaatcaaaaaaagaaagaaataccTGACACAATTTTC
GAAATTAAAGCCTGGCTTTGGGTACTCTTCGACTGCTGCCGACGCCATTT
TTTGAATCTAGCTTTGTCATGTTGCTAGTGCGCAGGTACcttatttcact
ttcgatttcg
Run BLAST on NCBI

transcript from alignment at sc0000049:398757..399466

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004958 ID=TCONS_00004958|Name=TCONS_00004958|organism=Clytia hemisphaerica|type=transcript|length=710bp|location=Sequence derived from alignment at sc0000049:398757..399466 (Clytia hemisphaerica)
cgaaatcgaaagtgaaataagGTACCTGCGCACTAGCAACATGACAAAGC
TAGATTCAAAAAATGGCGTCGGCAGCAGTCGAAGAGTACCCAAAGCCAGG
CTTTAATTTCGAAAATTGTGTCAggtatttctttctttttttgattttat
acttTCTTTAGCGAGTGGAATCTTTTTTACCCACTCTCTTTAACTTTATC
CAGTAATCACTATCTTTTGGATTACTCTCAAGGCCCTCAGAAGGGGGGGG
GGAATAAAAAAACCtgcctggaaaaaaaatcaaaatcagacAGTCTAGCT
AGCTTTCTTCtgcaggccatattttagaaaggtaaggcagcgtccgttgg
tagtcaaaaagggcactttttccagtgtttttccactaaaaaggctcttt
tttttacaaatgttcCAGTAAGGGGCAacgtccatattcaaagtcgccac
gcgtaacgggaaaagaccgttactTTCAAAACATACCTACCCACCTTCTT
AACGGTCTTCAtaatttgaccaaaatcttACCGAAGCTGCTGCCATTCCc
gctaaaatgaaaacaagcgGCCCGCTAAAGtacttatcttttctttttct
gtgaTGTTGTCTTCGCATGGAATTCTTCGTGAATAAACGGTCAAGGTTTT
TCGGGATGCCCGGGTCTATCTCATATGGACGTCTTGCCAGGATGCCGGAA
CCGAGAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002806XLOC_002806Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004958-exon-sc0000049-1491911889:398757..399466TCONS_00004958-exon-sc0000049-1491911889:398757..399466Clytia hemisphaericaexon
TCONS_00004958-exon-sc0000049-1510915933:398757..399466TCONS_00004958-exon-sc0000049-1510915933:398757..399466Clytia hemisphaericaexon
TCONS_00004958-exon-sc0000049-1575043694:398757..399466TCONS_00004958-exon-sc0000049-1575043694:398757..399466Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:398757..399466 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
66.0261	67.3551	70.9894	76.5167	1.44474	1.45467	1.16264	0.857974	30.1409	24.3843	23.9947	21.2128	19.2198	17.2651	21.041	23.1753	24.6766	25.2498	8.83029	12.1382	33.2367	31.8337	35.0252	31.6823	1.09421	1.54582	37.0085	33.8383	28.1372	22.5247
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004958 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top