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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004956 ID=TCONS_00004956|Name=TCONS_00004956|organism=Clytia hemisphaerica|type=transcript|length=1497bp
TTAAGGTTAGCATCGTAGTTCTAGGGTGAAacgtttttatttttgcaaac
aTTCTTTTATAGGTAGTGATATTATTATGAAAcgtttgtaaatattttcc
gataaattgtttttatattatttagttatattttgaattttcggGAGGGT
GATATCAATTGTTTGACAAATGACAAATATTGCAACTTTATTTTGCTTTT
AGTGttatgattgattgattgattgattgattgattgattgattgattga
ttgattgattgattgattgattgattgattgattgattgattgattgatt
gatagaTTGATAGATTGatagattgattgattgattgattgattgattga
ttgattgattgattggtattgacattctttttttctgtttagAGTGAAAT
AAGTATAAAAACTACaactaaaaacaaaaaccaaaaacaagGAATGACGG
AACCAATAGCAGAGGAAAACATACCGGCAGACGAAAAACCAGAGAAACAA
CCGGACGATTTCAACGATGATGTGAACTACAAAGAGAAATATCGGACATT
AAAACGAAAATTGAAATCGCTACTTTACGAGCAAGAATGTTTTCACGAGG
AATTACGTAAGATACAACGGAAATGTTTAAGAGTGAGTCGTGACAAGAGT
TTCTTGTTAGATCGTCTGTTACAGTATGAACAACCTGGACTTTCTTCTGA
CGAAGAACTGACTGATTCTTCcgatgatgaagaagaaaaacctCAAATCA
GCAAGAAACAGATTTCCaagacatcaaaacaaaaatctaaaGCAGTGTCC
AATGCAAGTAGTGGATCCAAGAACAGTGATAAGATACGATGTAAACAAAT
GGAAAACGGAAAGCAATGTTCCAAACTTGTTAGTAAGAAAATCGTGTCAG
GGATTTGTCAAACGCATAGACAACAGGCGAACAAGAGTAAAGTTACCGAA
ACGAAGAAAGAAACATCCTCAAAAGCTGACAACCCCGCCCCAGTGAAGAG
GGTGGCTGGTGGCGGGAAGGATATAGGACAATTCCGGGAAGCGATGGAAG
CTAGCCAGAAGGAGTTGAGTGATTCTGAAgcaaatgaagaagaagatgag
tTGATTATTGACGTTCCACACTGATcaactgaaaatctttttcatgaACA
AACTAACGTTGGTTTAACTGCTTTcttttgatacccctttttatGAGGAT
GGGACTTTCACAATGAACAACGAACAACTGTCTTTCTGCTCCTTGTACAC
TGATTACCTTGAACTTTATTGCTTTATTTGATTATTACTTTACAGAACTT
CACTATTTGGATAAATTTTTTACCAATGATGTTTTGTGAATCTAAAGCTT
TTAAAATTATAGAAAGATAATATTCTTAATCCCCGGGAAGAACGATGTCG
TCATATTGTCATAATTTGGAATAGAGTTTTGTTTATAGAATACGTTTTGT
TGTATTCTGGTAGAATTAGACCAATAAAGGGTCTAACCCTACAATTT Run BLAST on NCBI protein sequence of TCONS_00004956-protein >TCONS_00004956-protein ID=TCONS_00004956-protein|Name=TCONS_00004956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MTEPIAEENIPADEKPEKQPDDFNDDVNYKEKYRTLKRKLKSLLYEQECF
HEELRKIQRKCLRVSRDKSFLLDRLLQYEQPGLSSDEELTDSSDDEEEKP
QISKKQISKTSKQKSKAVSNASSGSKNSDKIRCKQMENGKQCSKLVSKKI
VSGICQTHRQQANKSKVTETKKETSSKADNPAPVKRVAGGGKDIGQFREA
MEASQKELSDSEANEEEDELIIDVPH Run BLAST on NCBI transcript from alignment at sc0000049:361158..362654 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004956 ID=TCONS_00004956|Name=TCONS_00004956|organism=Clytia hemisphaerica|type=transcript|length=1497bp|location=Sequence derived from alignment at sc0000049:361158..362654 (Clytia hemisphaerica)
AAATTGTAGGGTTAGACCCTTTATTGGTCTAATTCTACCAGAATACAACA
AAACGTATTCTATAAACAAAACTCTATTCCAAATTATGACAATATGACGA
CATCGTTCTTCCCGGGGATTAAGAATATTATCTTTCTATAATTTTAAAAG
CTTTAGATTCACAAAACATCATTGGTAAAAAATTTATCCAAATAGTGAAG
TTCTGTAAAGTAATAATCAAATAAAGCAATAAAGTTCAAGGTAATCAGTG
TACAAGGAGCAGAAAGACAGTTGTTCGTTGTTCATTGTGAAAGTCCCATC
CTCataaaaaggggtatcaaaagAAAGCAGTTAAACCAACGTTAGTTTGT
tcatgaaaaagattttcagttgATCAGTGTGGAACGTCAATAATCAactc
atcttcttcttcatttgcTTCAGAATCACTCAACTCCTTCTGGCTAGCTT
CCATCGCTTCCCGGAATTGTCCTATATCCTTCCCGCCACCAGCCACCCTC
TTCACTGGGGCGGGGTTGTCAGCTTTTGAGGATGTTTCTTTCTTCGTTTC
GGTAACTTTACTCTTGTTCGCCTGTTGTCTATGCGTTTGACAAATCCCTG
ACACGATTTTCTTACTAACAAGTTTGGAACATTGCTTTCCGTTTTCCATT
TGTTTACATCGTATCTTATCACTGTTCTTGGATCCACTACTTGCATTGGA
CACTGCtttagatttttgttttgatgtcttGGAAATCTGTTTCTTGCTGA
TTTGaggtttttcttcttcatcatcgGAAGAATCAGTCAGTTCTTCGTCA
GAAGAAAGTCCAGGTTGTTCATACTGTAACAGACGATCTAACAAGAAACT
CTTGTCACGACTCACTCTTAAACATTTCCGTTGTATCTTACGTAATTCCT
CGTGAAAACATTCTTGCTCGTAAAGTAGCGATTTCAATTTTCGTTTTAAT
GTCCGATATTTCTCTTTGTAGTTCACATCATCGTTGAAATCGTCCGGTTG
TTTCTCTGGTTTTTCGTCTGCCGGTATGTTTTCCTCTGCTATTGGTTCCG
TCATTCcttgtttttggtttttgtttttagttGTAGTTTTTATACTTATT
TCACTctaaacagaaaaaaagaatgtcaataccaatcaatcaatcaatca
atcaatcaatcaatcaatcaatcaatctatCAATCTATCAAtctatcaat
caatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatca
atcaatcaatcaatcaatcaatcaatcaatcaatcaatcataaCACTAAA
AGCAAAATAAAGTTGCAATATTTGTCATTTGTCAAACAATTGATATCACC
CTCccgaaaattcaaaatataactaaataatataaaaacaatttatcgga
aaatatttacaaacgTTTCATAATAATATCACTACCTATAAAAGAAtgtt
tgcaaaaataaaaacgtTTCACCCTAGAACTACGATGCTAACCTTAA Coding sequence (CDS) from alignment at sc0000049:361158..362654 >TCONS_00004956 ID=TCONS_00004956|Name=TCONS_00004956|organism=Clytia hemisphaerica|type=CDS|length=681bp|location=Sequence derived from alignment at sc0000049:361158..362654 (Clytia hemisphaerica)
TCAGTGTGGAACGTCAATAATCAactcatcttcttcttcatttgcTTCAG
AATCACTCAACTCCTTCTGGCTAGCTTCCATCGCTTCCCGGAATTGTCCT
ATATCCTTCCCGCCACCAGCCACCCTCTTCACTGGGGCGGGGTTGTCAGC
TTTTGAGGATGTTTCTTTCTTCGTTTCGGTAACTTTACTCTTGTTCGCCT
GTTGTCTATGCGTTTGACAAATCCCTGACACGATTTTCTTACTAACAAGT
TTGGAACATTGCTTTCCGTTTTCCATTTGTTTACATCGTATCTTATCACT
GTTCTTGGATCCACTACTTGCATTGGACACTGCtttagatttttgttttg
atgtcttGGAAATCTGTTTCTTGCTGATTTGaggtttttcttcttcatca
tcgGAAGAATCAGTCAGTTCTTCGTCAGAAGAAAGTCCAGGTTGTTCATA
CTGTAACAGACGATCTAACAAGAAACTCTTGTCACGACTCACTCTTAAAC
ATTTCCGTTGTATCTTACGTAATTCCTCGTGAAAACATTCTTGCTCGTAA
AGTAGCGATTTCAATTTTCGTTTTAATGTCCGATATTTCTCTTTGTAGTT
CACATCATCGTTGAAATCGTCCGGTTGTTTCTCTGGTTTTTCGTCTGCCG
GTATGTTTTCCTCTGCTATTGGTTCCGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004956-exon-sc0000049-1491911889:361158..362654 | TCONS_00004956-exon-sc0000049-1491911889:361158..362654 | Clytia hemisphaerica | exon |
| TCONS_00004956-exon-sc0000049-1510915933:361158..362654 | TCONS_00004956-exon-sc0000049-1510915933:361158..362654 | Clytia hemisphaerica | exon |
| TCONS_00004956-exon-sc0000049-1575043694:361158..362654 | TCONS_00004956-exon-sc0000049-1575043694:361158..362654 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:361158..362654 . |
Blast
BLAST of TCONS_00004956 vs. Swiss-Prot (Human)
Match: IN80E (INO80 complex subunit E OS=Homo sapiens GN=INO80E PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 7.518e-21 Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 3
Query: 513 NDDVNYKEKYRTLKRKLKSLLYEQECFHEELRKIQRKCLRVSRDKSFLLDRLLQYE 680
+ +V+YK+KYR LKRKLK L+YE ECF EELRK QRK L+VSRDKSFLLDRLLQYE
Sbjct: 6 DGEVDYKKKYRNLKRKLKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYE 61
The following BLAST results are available for this feature:
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