TCONS_00004953 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004953
Unique NameTCONS_00004953
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length248

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004953 ID=TCONS_00004953|Name=TCONS_00004953|organism=Clytia hemisphaerica|type=transcript|length=248bp
GTGTCTGAGAGCTGGATGCCATGTGCAGACGAAGATGGATTGTTGatctt
gtttatctttttcttttgaacgaAAGAGAGATTCCCGGCTGATCTTCAGG
ACGTCTTTGTACGTGTTTTCAACAACATCGTGTCTGTACCCTCTTTTCAG
AAAGTACTGAAGGAGTTGTTTGCCATGGTTGATGTAGTCAGCTACGTTCG
TACAAATTCGACGGATTCTGATGAATTGTCCCTTCGGGATGTTTCTGA
Run BLAST on NCBI

transcript from alignment at sc0000049:246136..246383

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004953 ID=TCONS_00004953|Name=TCONS_00004953|organism=Clytia hemisphaerica|type=transcript|length=248bp|location=Sequence derived from alignment at sc0000049:246136..246383 (Clytia hemisphaerica)
TCAGAAACATCCCGAAGGGACAATTCATCAGAATCCGTCGAATTTGTACG
AACGTAGCTGACTACATCAACCATGGCAAACAACTCCTTCAGTACTTTCT
GAAAAGAGGGTACAGACACGATGTTGTTGAAAACACGTACAAAGACGTCC
TGAAGATCAGCCGGGAATCTCTCTTtcgttcaaaagaaaaagataaacaa
gatCAACAATCCATCTTCGTCTGCACATGGCATCCAGCTCTCAGACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002801XLOC_002801Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004953-exon-sc0000049-1491911889:246136..246383TCONS_00004953-exon-sc0000049-1491911889:246136..246383Clytia hemisphaericaexon
TCONS_00004953-exon-sc0000049-1510915933:246136..246383TCONS_00004953-exon-sc0000049-1510915933:246136..246383Clytia hemisphaericaexon
TCONS_00004953-exon-sc0000049-1575043694:246136..246383TCONS_00004953-exon-sc0000049-1575043694:246136..246383Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:246136..246383 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.537974	1.42821	1.48831	1.10202	2.37904	2.0347	9.52431	1.52459	3.95945	0.489686	3.11519	5.9098	2.03183	0.0790073	2.18967	2.95761	4.14944	1.45067	0.880232	1.35881	2.11116	0	0.672812	5.72727	3.48207	2.70028	0	4.04246	2.44912
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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