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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004952 ID=TCONS_00004952|Name=TCONS_00004952|organism=Clytia hemisphaerica|type=transcript|length=1776bp
tgattttcttgttaTATATTTCTATGTTATATTATATTATGAAATAATTC
TTATCAGCGGTCtcaataaagaaaatataacaATTATTCAATGCTTAGTC
TATCATTAAATGGATTtaaccccctcccccgggcaCTCGATTTAAAGACG
ACCGTATGTGCTgcccaaaaatctttttttctatctttttaccCCTTAGA
GTGCTTTTTCTATAAACcttgctcatttcgacccttacagagCACTTCTG
GAAGTCCGAAAAACGTACCCTCAAGGGCCGCACCTAAGGTCATTTACCTT
AAGTACCATCCCCCGCAACCCTGGGATTTCAGCAAGAGAAAACGACTTCT
CTACTAATTAGAATTAGTCTTAGTGTTTGCTTAAACCCAGTTTCTTTTAT
AATACAATCCGTTTACAGTTAATAAAATTATTCCAAACATTGATAAACAG
GAAAACTATATCCATAGAATTGACAACGTTAACTCTTTCACGTCCCagag
tttcatttttttgaaaacgccGACCGGTTAAGGGCTAAGGGCGCCCCAGC
AAAACCAacctattttcttcaaaatttcacgtCCTTTGCAATGGTAGGTC
CGAGAGCTCTGGAAACCTTTTATTTCGTGAAATATAGTCTGGTGAAGTTA
TGTTCCGAAGAGACCCGCTCTACGGGTGTCTCGGACTGAATGGGTTAACG
ATTTTTAAGCTATATACCAGTAGGGGAAATTGCTTATATTTGAACTCTGA
CCTAGGCACATTACAATATTCTTTAGCGTGCAAGTGCAATATGTTGTGCG
CCTTTGGATTAGGACATATAGAATCATTATGTTATATAACACCCTCTTTA
CATGTAGGTACAATTGTCAAATATGATACCATCGATGCATCAATAGAAAT
ATGATACCTCAATCTAAAATTCATCATAAAAGTAAATCTAGTTCTAAAAC
ACTGTCATCTCAAGTGTCAAATCTCATAAACCAATCGTGTTGGTAATGAC
ATCATTACATTATATTATTTCATTTGTCTTCATCAGCAAGAACTCTCTTG
ACCagctttttgaaatttcgtAGCCACATATCGAATCCTGGTCTATCAAC
CGgacctttctttttctttgaatcaGCTGACTCATCCCAAACACCGATCC
CACTCGGATTGCTTCCTCCCCTATGTTTCACTCCAAAACTCCATATTCCG
ATCTGGTTTTGATCACGCCTACGTTCTTCTTCGTCTCTCCATATCCCTAT
TCCGTTCGGGTTTCGTTTTGGCGtcCTCTTCCCAATTCCGTTCGGATATC
GCCATTCGCTATCTTTCCAGATCCCGATTCCATTCGGACTACGACGGCTC
TCATAATCTCTCCATATACCGATCCCGTTCGGATTACGGTATCTGTTTTC
ATCGCTCCAGATTCCTATTCCGTTTGGATTTCTACTTCTTCGACCTTCAT
CATTAGATTTTTCGccttgatgtttgtttctcatatTGAAATACATTCCC
AGCAAACTTGTCAATTTTTGATCAATATAAGAGTTTCCACCAGGTTTCCC
GTACATCTCTTTTACTTCATCATGCGGGCTATAACGTGAGTCCATCGCAT
TCAAAAATTCCTCAAGGTCTTCTTTTTGCTTATGGTTTAGCCCATAACAT
ATCGAAATTAagattaaaatacaaaatataaatttcagtCTCATTTTCAT
TATACTTTTTCACCTCTTGTTGCCATCAATAAGCTTTACTGAATATTCGA
AAGACACTTTTAGCAAATGATTCGGC Run BLAST on NCBI protein sequence of TCONS_00004952-protein >TCONS_00004952-protein ID=TCONS_00004952-protein|Name=TCONS_00004952-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MKMRLKFIFCILILISICYGLNHKQKEDLEEFLNAMDSRYSPHDEVKEMY
GKPGGNSYIDQKLTSLLGMYFNMRNKHQGEKSNDEGRRSRNPNGIGIWSD
ENRYRNPNGIGIWRDYESRRSPNGIGIWKDSEWRYPNGIGKRTPKRNPNG
IGIWRDEEERRRDQNQIGIWSFGVKHRGGSNPSGIGVWDESADSKKKKGP
VDRPGFDMWLRNFKKLVKRVLADEDK Run BLAST on NCBI transcript from alignment at sc0000049:166391..168166 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004952 ID=TCONS_00004952|Name=TCONS_00004952|organism=Clytia hemisphaerica|type=transcript|length=1776bp|location=Sequence derived from alignment at sc0000049:166391..168166 (Clytia hemisphaerica)
GCCGAATCATTTGCTAAAAGTGTCTTTCGAATATTCAGTAAAGCTTATTG
ATGGCAACAAGAGGTGAAAAAGTATAATGAAAATGAGactgaaatttata
ttttgtattttaatctTAATTTCGATATGTTATGGGCTAAACCATAAGCA
AAAAGAAGACCTTGAGGAATTTTTGAATGCGATGGACTCACGTTATAGCC
CGCATGATGAAGTAAAAGAGATGTACGGGAAACCTGGTGGAAACTCTTAT
ATTGATCAAAAATTGACAAGTTTGCTGGGAATGTATTTCAatatgagaaa
caaacatcaaggCGAAAAATCTAATGATGAAGGTCGAAGAAGTAGAAATC
CAAACGGAATAGGAATCTGGAGCGATGAAAACAGATACCGTAATCCGAAC
GGGATCGGTATATGGAGAGATTATGAGAGCCGTCGTAGTCCGAATGGAAT
CGGGATCTGGAAAGATAGCGAATGGCGATATCCGAACGGAATTGGGAAGA
GgaCGCCAAAACGAAACCCGAACGGAATAGGGATATGGAGAGACGAAGAA
GAACGTAGGCGTGATCAAAACCAGATCGGAATATGGAGTTTTGGAGTGAA
ACATAGGGGAGGAAGCAATCCGAGTGGGATCGGTGTTTGGGATGAGTCAG
CtgattcaaagaaaaagaaaggtcCGGTTGATAGACCAGGATTCGATATG
TGGCTacgaaatttcaaaaagctGGTCAAGAGAGTTCTTGCTGATGAAGA
CAAATGAAATAATATAATGTAATGATGTCATTACCAACACGATTGGTTTA
TGAGATTTGACACTTGAGATGACAGTGTTTTAGAACTAGATTTACTTTTA
TGATGAATTTTAGATTGAGGTATCATATTTCTATTGATGCATCGATGGTA
TCATATTTGACAATTGTACCTACATGTAAAGAGGGTGTTATATAACATAA
TGATTCTATATGTCCTAATCCAAAGGCGCACAACATATTGCACTTGCACG
CTAAAGAATATTGTAATGTGCCTAGGTCAGAGTTCAAATATAAGCAATTT
CCCCTACTGGTATATAGCTTAAAAATCGTTAACCCATTCAGTCCGAGACA
CCCGTAGAGCGGGTCTCTTCGGAACATAACTTCACCAGACTATATTTCAC
GAAATAAAAGGTTTCCAGAGCTCTCGGACCTACCATTGCAAAGGacgtga
aattttgaagaaaataggtTGGTTTTGCTGGGGCGCCCTTAGCCCTTAAC
CGGTCggcgttttcaaaaaaatgaaactctGGGACGTGAAAGAGTTAACG
TTGTCAATTCTATGGATATAGTTTTCCTGTTTATCAATGTTTGGAATAAT
TTTATTAACTGTAAACGGATTGTATTATAAAAGAAACTGGGTTTAAGCAA
ACACTAAGACTAATTCTAATTAGTAGAGAAGTCGTTTTCTCTTGCTGAAA
TCCCAGGGTTGCGGGGGATGGTACTTAAGGTAAATGACCTTAGGTGCGGC
CCTTGAGGGTACGTTTTTCGGACTTCCAGAAGTGctctgtaagggtcgaa
atgagcaagGTTTATAGAAAAAGCACTCTAAGGggtaaaaagatagaaaa
aaagatttttgggcAGCACATACGGTCGTCTTTAAATCGAGtgcccgggg
gagggggttaAATCCATTTAATGATAGACTAAGCATTGAATAATtgttat
attttctttattgaGACCGCTGATAAGAATTATTTCATAATATAATATAA
CATAGAAATATAtaacaagaaaatca Coding sequence (CDS) from alignment at sc0000049:166391..168166 >TCONS_00004952 ID=TCONS_00004952|Name=TCONS_00004952|organism=Clytia hemisphaerica|type=CDS|length=681bp|location=Sequence derived from alignment at sc0000049:166391..168166 (Clytia hemisphaerica)
ATGAAAATGAGactgaaatttatattttgtattttaatctTAATTTCGAT
ATGTTATGGGCTAAACCATAAGCAAAAAGAAGACCTTGAGGAATTTTTGA
ATGCGATGGACTCACGTTATAGCCCGCATGATGAAGTAAAAGAGATGTAC
GGGAAACCTGGTGGAAACTCTTATATTGATCAAAAATTGACAAGTTTGCT
GGGAATGTATTTCAatatgagaaacaaacatcaaggCGAAAAATCTAATG
ATGAAGGTCGAAGAAGTAGAAATCCAAACGGAATAGGAATCTGGAGCGAT
GAAAACAGATACCGTAATCCGAACGGGATCGGTATATGGAGAGATTATGA
GAGCCGTCGTAGTCCGAATGGAATCGGGATCTGGAAAGATAGCGAATGGC
GATATCCGAACGGAATTGGGAAGAGgaCGCCAAAACGAAACCCGAACGGA
ATAGGGATATGGAGAGACGAAGAAGAACGTAGGCGTGATCAAAACCAGAT
CGGAATATGGAGTTTTGGAGTGAAACATAGGGGAGGAAGCAATCCGAGTG
GGATCGGTGTTTGGGATGAGTCAGCtgattcaaagaaaaagaaaggtcCG
GTTGATAGACCAGGATTCGATATGTGGCTacgaaatttcaaaaagctGGT
CAAGAGAGTTCTTGCTGATGAAGACAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004952-exon-sc0000049-1491911889:166391..168166 | TCONS_00004952-exon-sc0000049-1491911889:166391..168166 | Clytia hemisphaerica | exon |
| TCONS_00004952-exon-sc0000049-1510915933:166391..168166 | TCONS_00004952-exon-sc0000049-1510915933:166391..168166 | Clytia hemisphaerica | exon |
| TCONS_00004952-exon-sc0000049-1575043694:166391..168166 | TCONS_00004952-exon-sc0000049-1575043694:166391..168166 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:166391..168166 . |
Blast
The following BLAST results are available for this feature:
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