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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004946 ID=TCONS_00004946|Name=TCONS_00004946|organism=Clytia hemisphaerica|type=transcript|length=1519bp
GGGTAACTCTTTATCGTGATCAGGTGATTTGATCtacaactttttaaaac
aaattaaaaatgaaattgaaatatttgttgCTGTTTATTATGAAAGTAGA
AAGAACAAACAATAACCAAACAAATAATAATATAATCATTTACAATTATC
ATAAAATAAATCTCCAAAAAATAACCAGAGTTGAAACATACGAtaataat
tttatttgctttataTCATATACTTGTCAGGCATCAAACTTTAGTTGTTC
TACATCAAGTCATTCAATTTATTAAACTATAGAAAACGGCCTCACGTTTA
ATTGAAATTTACAAAGCTATNCATACATTTTATTTATCATATACCTGTCA
GGTAAAACAGACCTCGCGCAATTCACAAAACTTGAGATTCCAATCCTCCA
TAGAGCGATACATTAatttccttcaatttttttagcCGCTCAGTTCGTTT
TGGATGGCTAAACATATTGGCCATCTTTTTATGATTACCTAATTTTGAAT
AAGTCTCCAAACCATCCTCAGTTGTGGCCCTCAATACACGATTCAATTTC
AACTTCTTCCGTGTATATGAAATACCACCACTGCAATAATATTCACCCAA
TTTTGCAGAAGTCTCATCTGCTGAGAATTCCATATAATGAGCAAGTGGTC
TTTTAGACATATAATACACTGGAGCTCCTAATAACCACACAGCCATTGTT
AAACCTATATGACTTGCAAGTCCTAATGGTTTCCTCAAAAGTCTTGGACC
GAATGTACCTAGTTTATAAAACATGTAGAAAAGACCAACTCCATGAGCAG
TACTTGCAAGAAAATGCATGTCTTTGATATGACTTAATTCATGACCAATT
AAAAACTTAATTTCATCATCGTTAAGAATCAAAGTCTCTTTGAGAACATC
TCCTGTCTTAGAGTTCCAATCAACTGGTTTGTTATTGTTGAAATGAATTC
CAGCATGGATAAGGTGATTAGGGTGGGTGTATAGTGCGTTTCTTGGAAGT
ACCACAACTGCTTTGTTTGGAAACAAAAGACAACCAGCGCTGACAGTGTT
CAAGGTTTTGGAGTGAGTCAAATCAACTTTGTTTACATCAATGTCCATTA
ACTTACATGTctctttcaaaatgtttttgtatCGTGGATCTACATGCCTG
CTTGAGCTTGGTGAAAGGCTGTGAACCAAATCAACAGATTGTTTGGGGAA
AAGATGAGGACCAACATTCAAGCAAAACAGTGAAGTTGTGCCAATTCCAG
CAATTATTTTTAAACTTCTTTGAAATAATTCTATTTGCCTTGTTGTCATG
ACTATAACATTAGGAATTAAaagtagaaaaataaacattaggTGAGGCCA
AAGATTTCATCTGATTTCATGGGCAAATAAATATGCATAATACATACATA
ACATATCAGTTTTAATACATTTTCATCCTTCACATAACTAAAAACTAATC
TAAGCACACATTTCAAACGCCTTATTAAATCATATTCAGTCTTCCCAGAG
CAACAAAATCTGGCTGTAG Run BLAST on NCBI protein sequence of TCONS_00004946-protein >TCONS_00004946-protein ID=TCONS_00004946-protein|Name=TCONS_00004946-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MFIFLLLIPNVIVMTTRQIELFQRSLKIIAGIGTTSLFCLNVGPHLFPKQ
SVDLVHSLSPSSSRHVDPRYKNILKETCKLMDIDVNKVDLTHSKTLNTVS
AGCLLFPNKAVVVLPRNALYTHPNHLIHAGIHFNNNKPVDWNSKTGDVLK
ETLILNDDEIKFLIGHELSHIKDMHFLASTAHGVGLFYMFYKLGTFGPRL
LRKPLGLASHIGLTMAVWLLGAPVYYMSKRPLAHYMEFSADETSAKLGEY
YCSGGISYTRKKLKLNRVLRATTEDGLETYSKLGNHKKMANMFSHPKRTE
RLKKLKEINVSLYGGLESQVL Run BLAST on NCBI transcript from alignment at sc0000049:13870..15388 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004946 ID=TCONS_00004946|Name=TCONS_00004946|organism=Clytia hemisphaerica|type=transcript|length=1519bp|location=Sequence derived from alignment at sc0000049:13870..15388 (Clytia hemisphaerica)
CTACAGCCAGATTTTGTTGCTCTGGGAAGACTGAATATGATTTAATAAGG
CGTTTGAAATGTGTGCTTAGATTAGTTTTTAGTTATGTGAAGGATGAAAA
TGTATTAAAACTGATATGTTATGTATGTATTATGCATATTTATTTGCCCA
TGAAATCAGATGAAATCTTTGGCCTCAcctaatgtttatttttctacttT
TAATTCCTAATGTTATAGTCATGACAACAAGGCAAATAGAATTATTTCAA
AGAAGTTTAAAAATAATTGCTGGAATTGGCACAACTTCACTGTTTTGCTT
GAATGTTGGTCCTCATCTTTTCCCCAAACAATCTGTTGATTTGGTTCACA
GCCTTTCACCAAGCTCAAGCAGGCATGTAGATCCACGatacaaaaacatt
ttgaaagagACATGTAAGTTAATGGACATTGATGTAAACAAAGTTGATTT
GACTCACTCCAAAACCTTGAACACTGTCAGCGCTGGTTGTCTTTTGTTTC
CAAACAAAGCAGTTGTGGTACTTCCAAGAAACGCACTATACACCCACCCT
AATCACCTTATCCATGCTGGAATTCATTTCAACAATAACAAACCAGTTGA
TTGGAACTCTAAGACAGGAGATGTTCTCAAAGAGACTTTGATTCTTAACG
ATGATGAAATTAAGTTTTTAATTGGTCATGAATTAAGTCATATCAAAGAC
ATGCATTTTCTTGCAAGTACTGCTCATGGAGTTGGTCTTTTCTACATGTT
TTATAAACTAGGTACATTCGGTCCAAGACTTTTGAGGAAACCATTAGGAC
TTGCAAGTCATATAGGTTTAACAATGGCTGTGTGGTTATTAGGAGCTCCA
GTGTATTATATGTCTAAAAGACCACTTGCTCATTATATGGAATTCTCAGC
AGATGAGACTTCTGCAAAATTGGGTGAATATTATTGCAGTGGTGGTATTT
CATATACACGGAAGAAGTTGAAATTGAATCGTGTATTGAGGGCCACAACT
GAGGATGGTTTGGAGACTTATTCAAAATTAGGTAATCATAAAAAGATGGC
CAATATGTTTAGCCATCCAAAACGAACTGAGCGgctaaaaaaattgaagg
aaatTAATGTATCGCTCTATGGAGGATTGGAATCTCAAGTTTTGTGAATT
GCGCGAGGTCTGTTTTACCTGACAGGTATATGATAAATAAAATGTATGNA
TAGCTTTGTAAATTTCAATTAAACGTGAGGCCGTTTTCTATAGTTTAATA
AATTGAATGACTTGATGTAGAACAACTAAAGTTTGATGCCTGACAAGTAT
ATGAtataaagcaaataaaattattaTCGTATGTTTCAACTCTGGTTATT
TTTTGGAGATTTATTTTATGATAATTGTAAATGATTATATTATTATTTGT
TTGGTTATTGTTTGTTCTTTCTACTTTCATAATAAACAGcaacaaatatt
tcaatttcatttttaatttgttttaaaaagttgtaGATCAAATCACCTGA
TCACGATAAAGAGTTACCC Coding sequence (CDS) from alignment at sc0000049:13870..15388 >TCONS_00004946 ID=TCONS_00004946|Name=TCONS_00004946|organism=Clytia hemisphaerica|type=CDS|length=966bp|location=Sequence derived from alignment at sc0000049:13870..15388 (Clytia hemisphaerica)
atgtttatttttctacttTTAATTCCTAATGTTATAGTCATGACAACAAG
GCAAATAGAATTATTTCAAAGAAGTTTAAAAATAATTGCTGGAATTGGCA
CAACTTCACTGTTTTGCTTGAATGTTGGTCCTCATCTTTTCCCCAAACAA
TCTGTTGATTTGGTTCACAGCCTTTCACCAAGCTCAAGCAGGCATGTAGA
TCCACGatacaaaaacattttgaaagagACATGTAAGTTAATGGACATTG
ATGTAAACAAAGTTGATTTGACTCACTCCAAAACCTTGAACACTGTCAGC
GCTGGTTGTCTTTTGTTTCCAAACAAAGCAGTTGTGGTACTTCCAAGAAA
CGCACTATACACCCACCCTAATCACCTTATCCATGCTGGAATTCATTTCA
ACAATAACAAACCAGTTGATTGGAACTCTAAGACAGGAGATGTTCTCAAA
GAGACTTTGATTCTTAACGATGATGAAATTAAGTTTTTAATTGGTCATGA
ATTAAGTCATATCAAAGACATGCATTTTCTTGCAAGTACTGCTCATGGAG
TTGGTCTTTTCTACATGTTTTATAAACTAGGTACATTCGGTCCAAGACTT
TTGAGGAAACCATTAGGACTTGCAAGTCATATAGGTTTAACAATGGCTGT
GTGGTTATTAGGAGCTCCAGTGTATTATATGTCTAAAAGACCACTTGCTC
ATTATATGGAATTCTCAGCAGATGAGACTTCTGCAAAATTGGGTGAATAT
TATTGCAGTGGTGGTATTTCATATACACGGAAGAAGTTGAAATTGAATCG
TGTATTGAGGGCCACAACTGAGGATGGTTTGGAGACTTATTCAAAATTAG
GTAATCATAAAAAGATGGCCAATATGTTTAGCCATCCAAAACGAACTGAG
CGgctaaaaaaattgaaggaaatTAATGTATCGCTCTATGGAGGATTGGA
ATCTCAAGTTTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004946-exon-sc0000049-1491911889:13870..15388 | TCONS_00004946-exon-sc0000049-1491911889:13870..15388 | Clytia hemisphaerica | exon |
| TCONS_00004946-exon-sc0000049-1510915933:13870..15388 | TCONS_00004946-exon-sc0000049-1510915933:13870..15388 | Clytia hemisphaerica | exon |
| TCONS_00004946-exon-sc0000049-1575043694:13870..15388 | TCONS_00004946-exon-sc0000049-1575043694:13870..15388 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:13870..15388 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001915 | Peptidase_M48 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004222 | metalloendopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004222 |
metalloendopeptidase activity |
Blast
The following BLAST results are available for this feature:
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