TCONS_00004945 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004945
Unique NameTCONS_00004945
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1290

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004945 ID=TCONS_00004945|Name=TCONS_00004945|organism=Clytia hemisphaerica|type=transcript|length=1290bp
NNAATTCTTTCCTTGATCTGTCACGAAATGCCTCGGTACTCCGAATCTAA
ATATGATGTGGTGAAGCAGCAGCTCTGCTATTACGTTTGCCTCAGTTGAT
GCCACTGCAAACGCTTCGGGCCAGGCTGTCAAGCGCTCGATAAATACGAC
TACGTACCTGTTACCGGCATCCGTTATTGGAAATGGACCGACAACGTCGC
AATGAAGGGCTTCAAAAACTTCTCCTGTCGCGATTGGATACAAAGGTGCA
TTCTTTTTGGTTGTTCCTTTGTCTTGTTGGCAAATAATACATGTGTTCAC
CCAAGTCTGGATATCTGTCAGCATATTGGGCCAGTAATATCGTCTGCGGA
TTTTATCTGCTGTCTTTGCAAATCCAAAATGGGCAGAGGCCGGNGTTCCT
TTGTCTTGTTGGCAAATAATACATGTGTTCACCCAAGTCTGGATATCTGT
CAGCATATTGGGCCAGTAATATCGTCTGCGGATTTTATCTGCTGTCTTTG
CAAATCCAAAATGGGCAGAGGCCAGTTCATCATGGTTGAGTTGCAGAATT
TGTGCACGATACCTCTTTGGGATAACCAGTTGTTTCCATGTCCCTTCTGT
TGTTGCAATCTTTGGACTAAATACGTGATATAACACGCCATTATCAATGA
GGTAGTTATCGATATCGCGAAGAATttccttcttttcttttgagtCCTCG
GGTATAACTTTGTCTGCGAGGTATTCCATTTTTCCTAGTAGCTGTGGGTC
GGCCTTTTGATGCCTGATTATCGATTCCTTATCAAAGGGGCTCTCTGTAA
ACGCCGAGAACTTTTGTTTCTCTCCTTTCTGCTCATCTATAATGCATGGA
GATGAATTATTCAAATTTCTCTCGTCGAGCTCGAGTTTGCTTCTCTCCTT
GAATGCTTCTGATTCATATTTCATGACGTTTGATTCATCTTCTCCTTCCA
CCGTTGTATTTGGGGTGAAAAATACCTCttccttttctatttttgatTCT
GGTNTCGTCGAGCTCGAGTTTGCTTCTCTCCTTGAATGCTTCTGATTCAT
ATTTCATGACGTTTGATTCATCTTCTCCTTCCACCGTTGTATTTGGGGTG
AAAAATACCTCttccttttctatttttgatTCTGGTTGTTCcgttttttt
cctatttttggtAGACTTCTTTTCTTGATTAGGATCTTTTGCTGCTCCAG
CTTGAAGTTGTTCCCATGGGATTCTTGATAGAGCGTCTGCATTTCCGTTT
GCCTTTCCGGGGCGGTATTCAATAACGAAATCATAGGCNN
Run BLAST on NCBI

transcript from alignment at sc0000049:830268..831779-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004945 ID=TCONS_00004945|Name=TCONS_00004945|organism=Clytia hemisphaerica|type=transcript|length=1512bp|location=Sequence derived from alignment at sc0000049:830268..831779- (Clytia hemisphaerica)
NNAATTCTTTCCTTGATCTGTCACGAAATGCCTCGGTACTCCGAATCTAA
ATATGATGTGGTGAAGCAGCAGCTCTGCTATTACGTTTGCCTCAGTTGAT
GCCACTGCAAACGCTTCGGGCCAGGCTGTCAAGCGCTCGATAAATACGAC
TACGTACCTGTTACCGGCATCCGTTATTGGAAATGGACCGACAACGTCGC
AATGAAGGGCTTCAAAAACTTCTCCTGTCGCGATTGGATACAAAGGTGCA
TTCTTTTTGGTTGTTCCTTTGTCTTGTTGGCAAATAATACATGTGTTCAC
CCAAGTCTGGATATCTGTCAGCATATTGGGCCAGTAATATCGTCTGCGGA
TTTTATCTGCTGTCTTTGCAAATCCAAAATGGGCAGAGGCCGGNGTTCCT
TTGTCTTGTTGGCAAATAATACATGTGTTCACCCAAGTCTGGATATCTGT
CAGCATATTGGGCCAGTAATATCGTCTGCGGATTTTATCTGCTGTCTTTG
CAAATCCAAAATGGGCAGAGGCCAGTTCATCATGGTTGAGTTGCAGAATT
TGTGCACGATACCTCTTTGGGATAACCAGTTGTTTCCATGTCCCTTCTGT
TGTTGCAATCTTTGGACTAAATACGTGATATAACACGCCATTATCAATGA
GGTAGTTATCGATATCGCGAAGAATTTCCTTCTTTTCTTTTGAGTCCTCG
GGTATAACTTTGTCTGCGAGGTATTTCATCTTTCCTAGTAGCTGTGGGTC
GGCCTTTTGATGCCTGATTATCGATTCCTTATCAAAGGGGCTCTCTGTGA
TCGCCGAGAACTTTTGTTTCTCTCCTTTCTGTTCATCTATAATGCATGGA
GATGAATTATTCAAACTTCTCTCGTCGAGCTCGAGTTTGCTTCTCTCCTT
GAATGCTTCTGATTCATATTTCATGACGNCTTTGTCTGCGAGGTATTCCA
TTTTTCCTAGTAGCTGTGGGTCGGCCTTTTGATGCCTGATTATCGATTCC
TTATCAAAGGGGCTCTCTGTAAACGCCGAGAACTTTTGTTTCTCTCCTTT
CTGCTCATCTATAATGCATGGAGATGAATTATTCAAATTTCTCTCGTCGA
GCTCGAGTTTGCTTCTCTCCTTGAATGCTTCTGATTCATATTTCATGACG
TTTGATTCATCTTCTCCTTCCACCGTTGTATTTGGGGTGAAAAATACCTC
TTCCTTTTCTATTTTTGATTCTGGTNTCGTCGAGCTCGAGTTTGCTTCTC
TCCTTGAATGCTTCTGATTCATATTTCATGACGTTTGATTCATCTTCTCC
TTCCACCGTTGTATTTGGGGTGAAAAATACCTCTTCCTTTTCTATTTTTG
ATTCTGGTTGTTCCGTTTTTTTCCTATTTTTGGTAGACTTCTTTTCTTGA
TTAGGATCTTTTGCTGCTCCAGCTTGAAGTTGTTCCCATGGGATTCTTGA
TAGAGCGTCTGCATTTCCGTTTGCCTTTCCGGGGCGGTATTCAATAACGA
AATCATAGGCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002793XLOC_002793Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004945-exon-sc0000049-1575043694:831060..831779TCONS_00004945-exon-sc0000049-1575043694:831060..831779Clytia hemisphaericaexon
TCONS_00004945-exon-sc0000049-1575043694:830268..830837TCONS_00004945-exon-sc0000049-1575043694:830268..830837Clytia hemisphaericaexon
TCONS_00004945-exon-sc0000049-1510915933:831060..831779TCONS_00004945-exon-sc0000049-1510915933:831060..831779Clytia hemisphaericaexon
TCONS_00004945-exon-sc0000049-1510915933:830268..830837TCONS_00004945-exon-sc0000049-1510915933:830268..830837Clytia hemisphaericaexon
TCONS_00004945-exon-sc0000049-1491911889:831060..831779TCONS_00004945-exon-sc0000049-1491911889:831060..831779Clytia hemisphaericaexon
TCONS_00004945-exon-sc0000049-1491911889:830268..830837TCONS_00004945-exon-sc0000049-1491911889:830268..830837Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:830268..831779 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.196916	0.293142	0.439667	0.654391	0.35407	0.175837	1.15366	1.81766	0.774375	0.942826	0.526722	0.749891	9.07551	10.3746	5.85489	8.82229	3.03753	3.87181	5.53351	7.4247	4.44784	2.25204	1.27529	1.88128	10.956	12.0502	2.66226	1.40643	0.211392	0.259793
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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