TCONS_00004942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004942
Unique NameTCONS_00004942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2504

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004942 ID=TCONS_00004942|Name=TCONS_00004942|organism=Clytia hemisphaerica|type=transcript|length=2504bp
ACGTTGGGTTCTTGTTACCGAAGCAACATGGAGGACTTTGAAGAAGATGA
TCATTTATCTGATAACTACACAGCGTTATTGGTCAACGAACACGAACCGT
CTGATTTCTATATAACAGATCCTCGATTACCTCCGCCGAAAAGCCCGATA
CGATTCGAATTTGATCGACATTCATCGTATCGAACGAAACGAATGGAGAA
TCCAGCGTACCGCAAAGACAGTCCTGATGTTGATGAGCGGAACATCCAAG
TCAAGGAAACCGTCCTTCCGCCTTCCCACCACAAGAAAAGTGTTGTTTCT
TCTGAGAATGGATCTTCTGCGTCGTTCAACAACCCTCACTACCGCTATGG
TTGGAGCAAACTGACACCCAAACTCTTACAATTTATGAACAAACCTGTAN
CAACCCTCACTACCGCTATGGTTGGAGCAAACTGACACCTAAACTCTTAC
AATTCATGAACAAACCTGTAtggtttttagtttttctttgtGTGGCAGGT
GTAGCGCAAGGACTTGTTGTCACCGGTGTTGCGTTTACTATATTGACCTC
TATTGAGAAACAATTCGGCTTTTCAAGTTCACACGTGGCGCTATTTGGAA
CCGTCTACGATACGGCGTACGGTATATTTTGCGTTTTCATTGGTTATGTT
GGTCATCGCCACAAACCACGTTTCCTTGGTTACGGATTAATCATAATGGC
GTGTGGAGCTGTGTTGACTTCCGTACCGAAATACATTATTGGGACTTATG
ACGTAGGTACTGAACGCGACACGGACTTCTGTCGGTTTTCAGTGACGTCG
ACACATACACCGATTTGCGGTGGCTCCGCGGAGTGGTATTACACCTTAAT
TTTTCTTGCTGGTAACGCAATGATTGGCATCGGAGCAACTCCGTTATACG
TTTTGGGACCATCACATTTGGACGAAATCACCCACCGTGGACAGAATGCT
TTATATACGGGCATCTTTTACGCATGCGCAGCTCTGGGACCAGCCCTAGG
TTTCATCATTGGTCTTCCTATCTTGAACACATGGGTGGATCTGGAACAGC
CGGCGAACTCAAACTTGACACCTGAAGATAGGAATTGGGTTGGTGCTTGG
tggattggttaccttgttggtGCTGTCATCATGCTTCTCCCTGCTGCTCC
AATGCTGGGATTCCCAAAACTCTTCCCCAACGCTGAGAAAGTCAAACAAG
CAAAAAGTGAACTTGAAGACACAATTGAAGAAGACAAGAACTTGAATCAC
AATTTCAAGTCTGTTTGGCCTGCAACGAAATCGCTGCTCAAAAATATTCC
ATTTGTGTGTATCTGTCTGGCGAGTGCAACCGAGAGTTTAGCCATTGGTG
gattttcaactttcttttcaaagtttgTTGAAACACAATTTCACGTGACT
TCGGGATCTTCATCGCTTTATTCAGGTGTCATTATCATACCTGGTGCTGC
TGGTGGTATGTTTTTGGGCGGATTTCTCATCAATCGTTACAAATGGAATT
GTAAACAAATCCTTCGGGCGGCTAGCATGATGGCGTTTGTTGCAGCAGTA
TGTGTGGCGTCCACCCTGATAGGTTGTAAAGGGCGTGAAGTGGTGGGTGG
TGACCTACCCTATGCTAATTCGTCAACGATATCTTTACAATCAGGGTGCA
ATGAATATTGTCAATGTTCCATAAGATATTATAAACCAGTTTGTTCAGTG
GTCGACCAACAGACATATTTTTCACCTTGCCACGCTGGATGCTCTAATAA
TCACACTGTCACCATTGACggagaaaagcattttcagAACTGCTCATGCG
TCGCCAGTCTGGTGAAGGATGGAAGATGTACTCCTGAATGCAATTTGTTT
CCATTGTTTTTCGTTTGTGCATTTCTGATGATGTTCTTCACCTTCATGAA
TAATGTACCGATGTTGATGGCTACACTGAGGGTTGTTCCAGAAGGCCAAG
GTTCGTTTGCCATGGGTTTCCAACAAATTTTCGTTCGTTTCCTTGGCTTC
ATACCTGCTCCAACAATGTTCGGACGATTGATCGATGAAAGTTGTAAATT
ATGGCATAAAGACGAATGTACGGGTGAAACGACGAGCTGTTTAGAATACA
AAAACGAAAACTTCAGATACTATATATTCTTACTTGGTGTTATTACCAAG
tttctttcatttgtttttatatttgcTGCATACAAAACTTACAAACTGCC
GCAAGGGGTTTCAAAATCAGCAGATAGCAGTAATAGCAGTAGTTATGATA
TGAAAAACTTTGCTGAAAGTTCTTGTGAAGAAACTTCGATGGAAAGTTTG
GATCAGGAAAAAGGAAGCAAGATCACACCTGTCAATGTGGTGGTCAGTGG
TAATGGTGATAATCTATGATGACTGGTGATATATGTTGGTTGTCGAACTC
GattcttttgttgttttctacATACTCTTTAGTTTGAATTGTTCTTTGAG
GTGACATTTGCAGTGGTGTGGCACTTACAAAGTCCTGCTAAAATCTGATT
ATTT
Run BLAST on NCBI

transcript from alignment at sc0000049:743000..757478-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004942 ID=TCONS_00004942|Name=TCONS_00004942|organism=Clytia hemisphaerica|type=transcript|length=14479bp|location=Sequence derived from alignment at sc0000049:743000..757478- (Clytia hemisphaerica)
ACGTTGGGTTCTTGTTACCGAAGCAACATGGAGGACTTTGAAGAAGATGA
TCATTTATCTGATGTAAGTTATTTTCACTCGCACCGACAAACTCTCCCGT
TGTTTAATGGGGTCACCAACGATACATTTTACCAACATTTATAAGGTAGA
ACTTACAAGTTCTCGCTAGCTAGGACTTTGAAAAGACATGACCGCGTCAC
AATACTCGCCTAAAAAGTCGTCTCAGCGAGAGAAATACCGTAAAATTACA
TCTCCGTTGGAAAACTTCACTTTTGCCAGGTTAATTGATGAGGGCACTAC
TCTATTTTCTCTTATAGTGAAACTATTCATATTGAACACAGATACTCTCT
TCGAAACTACTCGTACTCGATAGATAGATAGATAGACTGGAGTTCCTTTT
CTTTACTTACAGTCTAAACTTTTGACTTTTGTTGACCACTTGAAGTTTTC
AATAGAGCGTCTGAAGGGATGCCAAAATTATTTCCTACTAGTACATTTTT
CTCCTCAGAAAACAGGAAGTCTGGTCGTTCAGCTTTCTGAATATAGCTTG
AGGAGTTTAATTTCTAATCATCAGTGAGTTTCAATTGCTTTTTTTCTGCA
TAGTGGTTTTTGGACAAATGGCAATTTCTTTGCAGACGGATCACTTTTTG
TGGAACTAACGTATAATTTCTTTTGATAGAGTTAATAGATTTAAAAAACT
CATTTAACTCTTATAAAATGATTTCCAAAAGCGTACACCAGAGAGCTCAT
GAGCTTTTGCATTCTTTAACTGTCTACGTTAATGGAGTCAAAGCGGAAAC
ATTTAATTTTATGAGAATGTGTGACTTGCTGTCAAGGTTGTCTGATGTCG
CGTGCCTTCACCGTCTCGTAAAAAATCTGTCAGTTCCTTTTCTGGTAGTA
TGGTTTTCAGAAATTTCGCGTGCTACCTTTTTCCATTCCAGGGGGATGTT
CTTTTGTAGCAACTATAAATGATAACATAATTAGACATGATATAAAAGGG
GAGGTATTTTTGAGACCACAAGCTTTGTTCGTGATCCTTCTAATGAACAA
GGTATAATTGATGTTGGTGAAAGATTGCGCAAGACAGAACACACCTAGCG
CCTTCTCAAATACTAGTCTTTATTAGAAGAATCTATACTTATTTGACATC
TACACCTTTTTAAGTTGTCTTGCATAGCCTATAAGCAGGGTTCCTTTCAA
ATACCCAACCTTCTTACGGATCTGGGTGTTTCTTTGATAGTAGGGAACAC
ATAGTGTCAGCCTGGGTTTAAGCTGAATTATTTTAGCCCCCACGTTAAGT
GATAAGATTTTAGCTCCCCCAAGTACATAGGTCCCCCAAAAAAGTGATGT
ACTTCCAGCCCCCTCTTTTGGGAAAAATTAAGGGTGTAACCCCACCCTCC
CCCCCCCAATCAGCAGGGGGGCTGACGCTATGGAACACTAGCGGCAATTG
AATGTACGTTTATGGGCATAAACATAGCTTACATTGTTGGCGTAATAGTG
CCTGGGCCACCCATTCAACCGACTATTTCTCAGACTTATATGCATATAAG
AATTAGTTACACAACTTTTACATTTTACTCGTCTGAAGTTCACCGGAAAG
TGAACTATGTGCAGGGCGGATAGCGCGTTGAAGAAAAAGGATATTTGTGG
TTTGGGATATCTGTCAATGATCTGTCGTCCTTGCATTGCTGCTAATTATG
CAACTTTTCAAAATTAGTGCAGATGAGAGAGTAGTTGTTTAATACTTACC
TTAAGTGGATTAATTTTCGCGTGTACTAATTTTCGCGACACGAGAATTTA
AAGATTTCGCGTGGATTAAATTTCGCAAATCAAGGGTCTTTAAGATTTTT
GCGTGGATTAAATTTCGCGAAAATGGCCAAAATTTTCGGTCCATGCGAAA
ATTTATCCACTTAAGGTATTTGATTTAATCTGAAATATCAGAAAAACCTA
GCTGTAAAAGTGCGAATAAGTCCAGCTCCTTTTAGAGGAATACAACTATT
ATCACTAAGAAATTTATCAGCTTAAAAGAGTATCACCCCTGTTTGCCACC
GTTTGTATTGCTAATGATTGATGGCTTCAAAATGAAGCTGTACGTTTGGA
TTTTTTTTTTTTGAAACACGTTAACGCGTGTTCCGAAATCTTTTAAGATG
TGAAGGAGAGAAGGGGTGGGGTTTATTCCTTCCCCATCATCCAAAGAAGG
GAAATTCCTTTTATAATATACCTTTTCTTCTTTTAGATCGTTAGTACCGT
AACTTGGTCTAATGTCGACACCCCTCCTCCAATTCTGACACCCTTTTATC
AGCTGAAATTTATAGAAAGGTCGAAACTGTTTTTCTTTGCTTAGTGGTCA
GAGAGGAATGATCCTTTTTCAATCAATGATTCAAGCTTTCATATTATTCC
TTTCTCTAAAGAAGGGTGTCGAAATTAGACGAGGGATGTCGATATTAGAC
CAACTTACGGTAATGCCTTTTAAAAGCCTACCCTGGTGTTCAAATCAAGG
ACAAAACTAAGTACACTATGGAAAACCAAGGTGCACTTGGTTATCCCTAA
TTTTTTAAGAATAATGATATAGACTATGGACAATCTGGACAATCTGGAGC
AGCCCAATCTTGTAAAATCTAAGCTAAGTACAATAAATGATAACTTTGGA
TAGAGTTTTCTTAATCAAGTACAATTTTAGTACATTCCAATTTATCCCTG
ATATCCAGGGATTTTTGCTCCCAAGGTGTGCTTTGTTTTGTTTTTGATTT
GAAGACCAGGGTATGATATTGGACAGATAATCCTAAGGCGGGTGGTTGAA
AACCCTTTTGGGGAACAACATACCTTATTGCTTTACGGAAGACTATATCG
AAACTCCTTATCGAAACTAGGAAAGAATTGAGATAAATTTCTTTAATTAG
AGCATTTATTAATTTGATTATACCTCCTTATCAAGTTTATCAATAATAAT
GGAGTGTCAATTACGGCAGCGTCATCGGTTTCTCATACCTGAAATACCTT
ACCCTGTCACGTGACTGGCTTTGTTTATTTATTTTGTCTTGATGAGATGA
TGATGTATAACAAAACGTGCTATGGAATAGTTGTGGTAAAAAAGATTTAG
TTGATGTTTATACGTTTTTCAGGTAAGTCGCAGAATAAAAGAATTTTTAG
GGAAATGGGTAAGGATTGGGCATTTTTCAATATCAAAAATGCCTGGGTAC
TTCCATATACCTTCCTTCAATGATTACAATAATTTTGAAACTTTTTCAAA
TTTGTGGGGAAGGGAAGCTTTCTGGGCACACAATGTTTTGAATACAAAAT
GTCGGTTATACAGTGGAGTTCTTTTGTCTGATTCGTTCTTTTCATAGAAG
TCGCAACTAAAAACTAAAAACCTTTTTGGCAAAGAAAAAGATGTTTATCG
GTGATAGCAGTATTGTTTTATTAGTACTTACCGTCAACAATCCAAAAGTT
CGCTCAAAAATCAAATCGATCCGATTGGTTCAATTACAAAATTATGATTG
AGCCAAATCAACCAATCAGTGATTTGATTGTTGAGAAGATTTCTGGATAG
TTAACGGTAATGGTACTGTTTTATCAGAAAACTTTAAACTTTGTCGGAAA
CAACTTTTCATCAAGTAGAATTTTTATTGAAGAAAAATTCACCAATCACG
TGAAAAATCTTTGTCACCTACCCCTTTAAATTGATCAGAAAAATTCCTTG
TTATTCTTAAGAAAAAAAATTATCTGCTGTATCAATTCATGGTTTTTTTG
CCCCTTGTTTCATAACTGATAAATTTGATTTTACTGACGTGCTCAAGGGA
ATTCATACAGTATAACGTTTAGAAATTTAATCCCCTTGTCAATTTGTTAT
CGAATAATCTTAATGATCTAATCCATACAAATCATTATGTCTTTTGAATG
GTCGTCAATGACAACGCAAGCAATTAATGTTTTGGTTGTATTTTTAATTT
CAACGATACTGCTTCCTGTTTCATCGAAACAAAAAAAGTTTGTTGTCATT
TTTTGTGTTATTGCTTTCGAAGGAATAAAGGATAAAAAGTGTCAGTTCAG
TAAAAATTTGTATTTCTTTAAAACTGTAGAGAAACGTTTTTGATTTTTTG
AAAGTTACTTTGATTTTAGGTAAGTAAAAAAAGTTTTGACCTTTTTCATT
TCTGACTGCACGATGTCAAGTAATTGCTAACAACCTTTTACACGTCTTGA
GAGCAGGCATGGGGCGGTTCCCCTAAAGAAGAATAGTAGAGAGGAAAAAA
ACGTCAAATAAAATGTGAAGGTTTTGTTGTGACCTTTTGCCTTGCTAACT
TGTAAGACCACTTGTTAAACCTCCTTATAACCCAAGGTAATACCCAATGG
TAGCAGTTCTGTTAAAGGAAAAAAATCGGGACTCTTTTTAAGCCTTAAAG
GACTGAAAGTTTTGTGATTTCATCGACCCTGAGCGTGATTTTAAAGGATC
AGGAACATTTAGGGCGTGGCGAAAGGTTCTGTTTTCCTTAAAGCAATTTC
CAGGGGCCGCGGCTCCCTTTTGAAAGTGATAGGGCCACAATAAGTTGGCT
AAGGAGGCGCCACCATGGTTGGCTTTGAATTTTAGCATTTCTAGATCCTC
TAAAACAGGTCTGTTTTAAGATTATTAAACTGAATTTGGCTTGATTAGTA
AATTTTTCTTTTTTGCTTTGAAAAAATGTGTTCGGGCATTTGATTTCAGA
TTACCCCTACAAGTTTACCATTGACCTGGTGCTGAAAAAGTAATGGGGAT
GAGAAAAAATGTTATTGTTTATTTTCTGCTCCAAAGTTTTTTTTTATTTT
TAAAATCGTTCTTTTCATATCTTGCTGTAGTCTAGCAAGCTAGACGACTA
ATTCAGACATAAATTAGAAATAAAGCAAAAAAGTAAATTTTAGTCGTCTA
GGAACCTTTGTGCACTAACTCCAAACAAAATGAAAGTGTCAATATCGCAA
TTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGGCTGGAACACCGGATTCTTCCAGTC
GTTTATACAAACTAAATCCCGTATCATTATTTGTGTTTATTATTAGTATT
ACATGCATTATAAACGACTCCAGTCTAATCTTGCTGCCTTTCTTTGATTT
AGCAGCTAACTGATAAGTACGAGTTCAGACGCGGCTTGAAAACCTCCCGA
AATGGGACAAGTATATTCTTTTAAATTGATATTTGACTCGCTCACTAAAT
GTAAGGTGAGACGATACGTTTAACAATAGTTGGCCTTTTTATCAATCGAA
CATAAAAGTAAATCAGGGATTTTTATAAGTCATCCCGTGAAATCTCAATA
TTTATCCAAGCAAACATCATATTTAGTGGGCACATAACATCATATTCTCT
GTGTGCGATACAGCAACATAGGCCCTTTTTAGTCGAAAGAGAAGGTGTTT
TCATAGGTGAGTTGACTTTCAAGAATTTTTCGTTGGTCAGAGTACTTTCT
TTTATTAAATGCATTTAAGACAAAAAAGTCTTACAATAAATAATACTTTT
GTGAAATATTGTGTGTTACCATAGTATAAGAAAATCGCGGCTTTCTTATA
CTATGGTGTTGCGTAAAAGGGGTAGCTCTTAGCGTAAAATGGGCAAGCTT
TCAGGGGTCTGAGTTTTAATGTGATCGAACCTCTTGTAAAAAACATCGGC
AATTTTCGTGATAAAGATACCCTAGGAAAACTTATTTGCAAATTACTTGA
ATTCTGCTTTTTCCTTATATAGAGAGACGTTTCGAGTTTGAAACTTGATG
TTTATACGTTATTTTGTCAGAATGTCAAAAAACTTTGAGAATTGCGTCGT
TTACATAGAATCTTCAAAGCCGGTTCAGTAAATTCTTATGTTGTATGCAC
CCCCTCTGATATATTTTGTTATAGAGGATGCGTATAGTGTATAAAACTCC
CGTCCGAGAATTACACCCGTCTCAGCGTTTCTTTGAGATTTAGAAACTTG
ATTAGCTTGAAAAAAAAAACGTGTATACAAAAACGCGTACAACCAAAGTT
TTTGAAGCCTTCGGATGTTCTTAATTTTTTGAGTTTTAAGCCTAACATTC
ACCTAAGAAACCGGGTGTTATATAGTCTATTATAAGCCATGAAATATTCT
TAACTTGTTCTTAATATTTTGACCATCGAAGCCTTATGTTCTTATATANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
AGAACAAGTTGGTCAAATTTAAAAAGTGATAGCTCAAATTTTAAGTTAGG
ATATCTACTTTCTAAATATCAAAACTCCAAGCACTTTGGGACATTTGTAC
GGCCTCAAGACGTCGGGAAACGTCTGAACTTTTTCGTGGGTCACCCGGTA
GTTTGTTCTTATAAAAAGACGTGTAGTTGGGAATTGAGTAAAAAATGTCA
TGTCTGCAACATCGATTCCCAATCGATTCATAACTTTCGTTCCGCTTGTT
GCTATGACAACTTCATTTTTCATTGAAATAGAAATTTCTATAATTTATTG
AAATAGTTTTTAAATGTTTATGTGAAAAAGAAGTCAAAATACGAAAGGTT
GTCTGAAAAGATATAGAGGAGGGAAAACGTGAAGGATTTATTTATCGATG
ATGTTTGATCAGGAATATTGATTTTGTTGAGTTATTTGATGGCCAAATTT
TTCGATGAGGTTGTTAAATTTGAAGAAAATGGACATTTCTATTGAAGAAG
TTAAAGTTGTTTAGTGAAAGTTGAATTTTGTTTTGGTCGTGAAATGGGTT
GCACCATAAAAAATAAGTAAGTTTCTAATGCGTGGATTTTTACCCTTATT
TACCAAATCCTTCTGTTGAATCTCAAATGTGAGAATTAGTTCCTTGTACA
AGCCATTTAAAGTTATTTCGGAGTCGGAACTCTTCTGCTCTATGATATTT
TCACTTAGCTAATTGGAGTAGCTTTTTATTTCTTTATTTCAAATCCATAT
TCCATTGGAAGCCAAACTTTCAAGATTCTTATCGCTCTCCATTTCTTTCG
GCTCAATTAGTCACGCTAACACAGCAAAGATAACGACACAGTCACGCAGT
GAAGTTCGCTTCTTTGATCCTATTCCCTGTCCTAATTCGGTAAAAAAACT
GACGGAAAAGGGAAAATTTTATCAAAAGTTTAGTTGCTTTGAAAAGCTTC
GTGGGAGGTCTTATTTGGCTAATTTGGAAAGCCTGTAATAGTACTTTTGT
TGTTCAAAAAGATAAAGCAAGTTTTTCACAATGAAATTTACCCGAAGATA
AGAAAGGAAAAAGGCCAGCATAGCGCGAGCAAGAAAAAGACTAAAAGAAA
AGTAAATGGAAAAAATGAATTATTTAGGAAACCAAGCTCTAAAACTTTCA
CGAAAACAAAATAAGTCTTAAACCTCTGATGTGTTGGGAGGCTCAACCTA
AAGAGGGTTTGGGCACGAAATGTTTGCATCCTGTTTACGCATGGGAAATA
TAGTATTTTTACGGTGAAAGAAAAAGAAAAGCAAAAACAAAATTGACGGG
CAGTGATTATTTATCCATTTGAAATCCTTGAAGGAAGGCTCGATCGGATT
GTACTGTTAAATTACTAGTCGAGACTTTTTAAAGATTTTCGGATAATTTT
TGGAAATTGTATAATATTTTGAATACAAGATGTCTTCTTTAGACACTGAA
GAATATGAGGTAAGATTAGACAATGACACAGGGGTATCATCTTAATGAAA
ATGATATAGGGGTGTCATCTTAATGAAAATGATATAGGGGTGTCATCTTA
ATGAAAATGACACAGGGATGCCATCTTAATGAAAATGACACAGGGATGCC
ATCTTAATGAAAATGACACAGGGATGTCTTTAATGAAAATGATACAGGGG
TGTCATCTTACTGAAAATGATATAGGGGTGTCATCTTAATGAAAATGACA
CAGGGATGCCATCTTAATGAAAATGATACAGGGGTGTCTTTAATGAAAAT
GACACGGGGATGTCATATTGAAAATGACACAGGAATGTCATATTGAATAT
GATACAGGGATGACACTTTATTATGTAGTTTGTTGGATGTAAGGACTGAC
CCTGGAGTATATTACTTTTGATTAGATCTTTAAAGCCTTCACCCAATCTT
TGACCCATAAGACAGTGCTCTGTAGACTTCAGAGTTGCGAAATCAGTAAG
AAAAGATGTACAGCACAAGCTCTTCTGTTTACGTCTAACCTCCATGATGG
AATTCCGTCCTTTCGTAGAAGTGTTAAATACAACATCCGAACATCAGAAA
GAGAGACGAAGCTGCCACTTTCTTTCGTTCTGTATTTTACATCTCTTTTT
ATCAGCATGATGACAGTTATAAAACTTGTGACACAAAAGCATTAGTATGT
GATTAAAAATGACGAATTAATTAATCTCCCTTTTCTTTTTAATACCACAT
ACTTCGAGCAATGTATTACCGCTCACATAGTATAACACGGTCTTGCTGCT
TTGCTGTTTGAATTTACCACGGAGTTTACAACGTTATTACAAATGTTATC
ATTTTCTTATTCTAGTCTTGGTTTATACAGAGAAAGATTTTAGCATTTTT
TTTTTTGTTTTTGATTCGTTTGGCACAAATTTACCACAGGATTGCGGAAT
TCGAATGATTTGTGCTTTAAGATTCTTTTTGATAATAAAGTGCTTATTTC
TTATGTAAAACCCTTTCATTTATTAAAACTTACATCAAAAACTTCCTTTA
TCAGTTTTTTTTTTGTCATGTATGGCTCGTACGATTGATAATTCATTTGT
ATGGGAGTGTTATATTGATGGGGTGACAGTTGAAACTAAATTTGCATATT
GGGATTGGAAGTAGAGTTTTTATTCACAAATGTTTTGAACTTAATAGCTA
GAAATATCCAAGCAAGTTTGTAAGCTAGTGTAATGACCATTCATGATTAG
ATGACTGTTCTTTCAGTAAGAGTGCTACTGTTAAGGGAATGCTTTACAAG
TTAAAATTGAACACTCCTTAAAAATCTTCAAGAGGTTTTGTTAATTTAAT
ATCGATGCATTGCTATATTCCCAAACTTTCTATAAACCTTGTTTCTCTTC
TGTTTTTGCAGAACTACACAGCGTTATTGGTCAACGAACACGAACCGTCT
GATTTCTATATAACAGATCCTCGATTACCTCCGCCGAAAAGCCCGATACG
ATTCGAATTTGATCGACATTCATCGTATCGAACGAAACGAATGGAGAATC
CAGCGTACCGCAAAGACAGTCCTGATGTTGATGAGCGGAACATCCAAGTC
AAGGAAACCGTCCTTCCGCCTTCCCACCACAAGAAAAGTGTTGTTTCTTC
TGAGAATGGATCTTCTGCGTCGTTCAACAACCCTCACTACCGCTATGGTT
GGAGCAAACTGACACCCAAACTCTTACAATTTATGAACAAACCTGTANCA
ACCCTCACTACCGCTATGGTTGGAGCAAACTGACACCTAAACTCTTACAA
TTCATGAACAAACCTGTATGGTTTTTAGTTTTTCTTTGTGTGGCAGGTGT
AGCGCAAGGACTTGTTGTCACCGGTGTTGCGTTTACTATATTGACCTCTA
TTGAGAAACAATTCGGCTTTTCAAGTTCACACGTGGCGCTATTTGGAACC
GTCTACGATACGGCGTACGGTATATTTTGCGTTTTCATTGGTTATGTTGG
TCATCGCCACAAACCACGTTTCCTTGGTTACGGATTAATCATAATGGCGT
GTGGAGCTGTGTTGACTTCCGTACCGAAATACATTATTGGGACTTATGAC
GTAGGTACTGAACGCGACACGGACTTCTGTCGGTTTTCAGTGACGTCGAC
ACATACACCGATTTGCGGCGGCTCCGCGGAGTGGTATTACACCTTAATTT
TTCTTGCNACACATACACCGATTTGCGGTGGCTCCGCGGAGTGGTATTAC
ACCTTAATTTTTCTTGCTGGTAACGCAATGATTGGCATCGGAGCAACTCC
GTTATACGTTTTGGGACCATCACATTTGGACGAAATCACCCACCGTGGAC
AGAATGCTTTATATACGGGCATCTTTTACGCATGCGCAGCTCTGGGACCA
GCCCTAGGTTTCATCATTGGTCTTCCTATCTTGAACACATGGGTGGATCT
GGAACAGGTAAAAATCTTTCTCTATTGATCTCTGTAATATTAAGTGGTTT
CACATCGTCAATGTCAGTTTAAACCTTTACGATGTAATTAAGATTTTTGA
AAGCATGTGATAAAACTTTATTTGAATTGCTGCTCATATCCTTTGTGGGA
AAGTGAATCTAACAATTTTAAGTTATANTGAATTGCCGCTCCTATCCTTT
GTGGGAAAGTGAATCTAACAATTTTAAATTATAAAAAATGCTAACATGAA
TTAACTTCATAATTTAGCCGGCGAACTCAAACTTGACACCTGAAGATAGG
AATTGGGTTGGTGCTTGGTGGATTGGTTACCTTGTTGGTGCTGTCATCAT
GCTTCTCCCTGCTGCTCCAATGCTGGGATTCCCAAAACTCTTCCCCAACG
CTGAGAAAGTCAAACAAGCAAAAAGTGAACTTGAAGACACAATTGAAGAA
GACAAGAACTTGAATCACAATTTCAAGTCTGTTTGGCCTGCAACGAAATC
GCTGCTCAAAAATATTCCATTTGTGTGTATCTGTCTGGCGAGTGCAACCG
AGAGTTTAGCCATTGGTGGATTTTCAACTTTCTTTTCAAAGTTTGTTGAA
ACACAATTTCACGTGACTTCGGGATCTTCATCGCTTTATTCAGGTGTCAT
TATCATACCTGGTAAGAACATTGTTCTACTTTTTCAACTGAAGACTAGAT
TCTGACCATGCTTGATCCATAACTTCCATAATTTGACTACAACCTCTAAC
TTCTTTTCAATCACACTAATTTTTCGCATTTCGTTTGTTTTAGAGTTGTG
ACATGTGACTTGGCGAGATTTCAATTTGTAGATTATAAATTCGTTCTCTT
TTACTACTTAATTTTCGTATATTCTATGCGTTTCCTTTCTATACGTAACC
CATTTTCATCTATGCTCAGGTGCTGCTGGTGGTATGTTTTTGGGCGGATT
TCTCATCAATCGTTACAAATGGAATTGTAAACAAATCCTTCGGGCGGCTA
GCATGATGGCGTTTGTTGCAGCAGTATGTGTGGCGTCCACCCTGATAGGT
TGTAAAGGGCGTGAAGTGGTGGGTGGTGACCTACCCTATGCTAATTCGTA
AGTGGAACAGATTTATTTATTGTTCATCGTTCAGTGAGAAATTTCTCAGA
TAGTAAATCCAAAGTCTAGAATAAATCGTTGTCGTTTCCTTATTGATTAA
AGTTACACCAATGTAAATATCTGTCAGCTTTGATAAAAATGACATGGGTC
TTCTGTTCATATTTTCAGGTCAACGATATCTTTACAATCAGGGTGCAATG
AATATTGTCAATGTTCCATAAGATATTATAAACCAGTTTGTTCAGTGGTC
GACCAACAGACATATTTTTCACCTTGCCACGCTGGATGCTCTAATAATCA
CACTGTCACCATTGACGGAGAAAAGGTAAAAATGGTTCATCCCATCTTTT
CTGGCAGCCTTCTCACAGACAAAGTTTGTCTATACAAGTTTCTTAATTCC
TAAATTTTATAACCAATGTCTTGCATTGGTTTAGGTATCTTAATCAAATA
AGTGAAAAGAAACTACCGAAAAAGTTATTAAGATTATTCCAAGAAATGTA
TACACATTTTCTTTCATTTCCAGCATTTTCAGAACTGCTCATGCGTCGCC
AGTCTGGTGAAGGATGGAAGATGTACTCCTGAATGCAATTTGTTTCCATT
GTTTTTCGTTTGTGCATTTCTGATGATGTTCTTCACCTTCATGAATAATG
TACCGATGTTGATGGCTACACTGAGGTAAGCGCTTTGAAATATGCGTATC
CATGATATATTCATCATAAAGTCTTGGTTTCAGTGAAAGAAATACTAGTA
GTCGATTTGCCAAAATATAGTTGCAAAGGTACTTAAAATAACATCAGAAG
CGAGAAAGGCTTGTGCCAATTTGGCCTGATATTTAAAAATCTGTATAACA
TGTATAACTCTATTATTAATCCTATCAGGTCAAATTTAAGGAGCTCTTTT
TTGAACAGAACCTCTGTTTGACTGTTTTATATCAATTTCTCTGTTTTCAT
TGCAGGGTTGTTCCAGAAGGCCAAGGTTCGTTTGCCATGGGTTTCCAACA
AATTTTCGTTCGTTTCCTTGGCTTCATACCTGCTCCAACAATGTTCGGAC
GATTGATCGATGAAAGTTGTAAATTATGGCATAAAGACGAATGTACGGGT
GAAACGACGAGCTGTTTAGAATACAAAAACGAAAACTTCAGATACTATAT
ATTCTTACTTGGTGTTATTACCAAGTTTCTTTCATTTGTTTTTATATTTG
CTGCATACAAAACTTACAAACTGCCGCAAGGGGTTTCAAAATCAGCAGAT
AGCAGTAATAGCAGTAGTTATGATATGAAAAACTTTGCTGAAAGTTCTTG
TGAAGAAACTTCGATGGAAAGTTTGGATCAGGAAAAAGGAAGCAAGATCA
CACCTGTCAATGTGGTGGTCAGTGGTAATGGTGATAATCTATGATGACTG
GTGATATATGTTGGTTGTCGAACTCGATTCTTTTGTTGTTTTCTACATAC
TCTTTAGTTTGAATTGTTCTTTGAGGTGACATTTGCAGTGGTGTGGCACT
TACAAAGTCCTGCTAAAATCTGATTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002791XLOC_002791Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004942-exon-sc0000049-1575043694:757416..757478TCONS_00004942-exon-sc0000049-1575043694:757416..757478Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1575043694:745927..746667TCONS_00004942-exon-sc0000049-1575043694:745927..746667Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1575043694:745622..745866TCONS_00004942-exon-sc0000049-1575043694:745622..745866Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1575043694:744968..745361TCONS_00004942-exon-sc0000049-1575043694:744968..745361Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1575043694:744532..744709TCONS_00004942-exon-sc0000049-1575043694:744532..744709Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1575043694:744204..744360TCONS_00004942-exon-sc0000049-1575043694:744204..744360Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1575043694:743854..744005TCONS_00004942-exon-sc0000049-1575043694:743854..744005Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1575043694:743000..743573TCONS_00004942-exon-sc0000049-1575043694:743000..743573Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1510915933:757416..757478TCONS_00004942-exon-sc0000049-1510915933:757416..757478Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1510915933:745927..746667TCONS_00004942-exon-sc0000049-1510915933:745927..746667Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1510915933:745622..745866TCONS_00004942-exon-sc0000049-1510915933:745622..745866Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1510915933:744968..745361TCONS_00004942-exon-sc0000049-1510915933:744968..745361Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1510915933:744532..744709TCONS_00004942-exon-sc0000049-1510915933:744532..744709Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1510915933:744204..744360TCONS_00004942-exon-sc0000049-1510915933:744204..744360Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1510915933:743854..744005TCONS_00004942-exon-sc0000049-1510915933:743854..744005Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1510915933:743000..743573TCONS_00004942-exon-sc0000049-1510915933:743000..743573Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1491911889:757416..757478TCONS_00004942-exon-sc0000049-1491911889:757416..757478Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1491911889:745927..746667TCONS_00004942-exon-sc0000049-1491911889:745927..746667Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1491911889:745622..745866TCONS_00004942-exon-sc0000049-1491911889:745622..745866Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1491911889:744968..745361TCONS_00004942-exon-sc0000049-1491911889:744968..745361Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1491911889:744532..744709TCONS_00004942-exon-sc0000049-1491911889:744532..744709Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1491911889:744204..744360TCONS_00004942-exon-sc0000049-1491911889:744204..744360Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1491911889:743854..744005TCONS_00004942-exon-sc0000049-1491911889:743854..744005Clytia hemisphaericaexon
TCONS_00004942-exon-sc0000049-1491911889:743000..743573TCONS_00004942-exon-sc0000049-1491911889:743000..743573Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:743000..757478 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.22683e-09	0.000350294	3.00594e-09	1.54747	0.00823815	0.00729079	1.46206	2.83571	0	0	0	0.038297	3.11255	0.0657439	1.20948	0.124428	2.9232	6.14784	1.22502	2.12158	11.816	11.4232	4.3362	6.19535	8.8882	11.1452	2.31885	0.0723184	1.97697	3.4011
Blast
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BLAST of TCONS_00004942 vs. Swiss-Prot (Human)
Match: SO4A1 (Solute carrier organic anion transporter family member 4A1 OS=Homo sapiens GN=SLCO4A1 PE=1 SV=2)

HSP 1 Score: 348.591 bits (893), Expect = 5.773e-107
Identity = 224/656 (34.15%), Postives = 342/656 (52.13%), Query Frame = 3 
Query:  327 QQPSLPLWLEQTDTQTLTIYEQTCXNPHYRYGWSKLTPKLLQFMNKPVWFLVFLCVAGVAQGLVVTGVAFTILTSIEKQFGFSSSHVALFGTVYDTAYGIFCVFIGYVGHR-HKPRFLGYGLIIMACGAVLTSVPKYIIGTYDVGTERDTDFCRFSVTSTHTPICGGSAEWY--YTLIFLAGNAMIGIGATPLYVLGPSHLDEITHRGQNALYTGIFYACAALGPALGFIIGLPILNTWVDLEQPANSNLTPEDRNWVGAWWIGYLVGAVIMLLPAAPMLGFPKLFPNAEKVKQAKS----ELEDTIEEDKNLNHNFK--------SVWPATKSLLKNIPFVCICLASATESLAIGGFSTFFSKFVETQFHVTSGSSSLYSGVIIIPXXXXXXXXXXXXINRYKWNCKQILRAASMMAFVAAVCVASTLIG-------CKGREVVGGDLPYANS----STISLQSGCNEYCQCSIRYYKPVCSVVDQQTYFSPCHAGCSNNHTVTIDGEKHFQNCSCVASLVKDG-------RCTPECNLFPLFFVCAFLMMFFTFMNNVPMLMATLRVVPEGQGSFAMGFQQIFVRFLGFIPAPTMFGRLIDESCKLWHKDECTGETTSCLEYKNENFRYYIFLLGVITKFLSFVFIFAAYKTYK 2195
            +QP   LW E+   +                GW    P  LQ +N P   L FLC A   QG+ V G   T++TS+E+++   S    L  + YD A  +   F+ Y G   HKPR+LG+G+++M  G+++ ++P +  G Y+V  +     C     +    +C  S      Y L+F+ G  + G+GATPLY LG ++LDE      + +Y  IFY  A LGPA G++IG  +LN + ++ +   + LT E   WVGAWW+G+L         A P+LG+P+  P +++    ++    +L+D+   + + N +F         S+W     LLKN  F+ +CLA ATE+  I G STF  KF+E+QF +++  ++   G +++P   GG FLGGF +N+ +      LR ++++ F    C   +L+G       C    + G    Y  S      ++L + CN  C C   +Y PVC   D   YFS CHAGC       +DG+K +++CSC+   +  G       +CT  C   PL  V  F+++FFTF++++P L ATLR V + Q SFA+G Q I VR LG IP P  FG +ID++C LW +D+C G+  SCL Y+N     YI ++G++ K L  +F   A   YK
Sbjct:   56 KQPLCQLWAEKHGARGTHEVRYVSAGQSVACGWWAFAPPCLQVLNTPKGILFFLCAAAFLQGMTVNGFINTVITSLERRYDLHSYQSGLIASSYDIAACLCLTFVSYFGGSGHKPRWLGWGVLLMGTGSLVFALPHFTAGRYEVELDAGVRTC----PANPGAVCADSTSGLSRYQLVFMLGQFLHGVGATPLYTLGVTYLDENVKSSCSPVYIAIFYTAAILGPAAGYLIGGALLNIYTEMGR--RTELTTESPLWVGAWWVGFLGSGAAAFFTAVPILGYPRQLPGSQRYAVMRAAEMHQLKDSSRGEAS-NPDFGKTIRDLPLSIW----LLLKNPTFILLCLAGATEATLITGMSTFSPKFLESQFSLSASEAATLFGYLVVPAGGGGTFLGGFFVNKLR------LRGSAVIKFCL-FCTVVSLLGILVFSLHCPSVPMAGVTASYGGSLLPEGHLNLTAPCNAACSCQPEHYSPVCGS-DGLMYFSLCHAGCPAATETNVDGQKVYRDCSCIPQNLSSGFGHATAGKCTSTCQRKPLLLVFIFVVIFFTFLSSIPALTATLRCVRDPQRSFALGIQWIVVRILGGIPGPIAFGWVIDKACLLW-QDQC-GQQGSCLVYQNSAMSRYILIMGLLYKVLGVLFFAIACFLYK 690
The following BLAST results are available for this feature:
BLAST of TCONS_00004942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SO4A15.773e-10734.15Solute carrier organic anion transporter family me... [more]
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