TCONS_00004939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004939
Unique NameTCONS_00004939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2243

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004939 ID=TCONS_00004939|Name=TCONS_00004939|organism=Clytia hemisphaerica|type=transcript|length=2243bp
aaaaaactttataaaacaaataaaaactgtCACGTGATGGAAAACCCAAC
TTTCACTTTTGAAGAAGTTAATGTGGGGAATAAAAACAAAGACGCTGAGT
CAGGGAATAATAATGAAAACATAGACAATAACAATTCACAAACACCCTAT
ATCGGacataaaaaagaaaaggatCCTCGCTATGGCTGGTATCAATttac
accaaaatttcttcGCTTCTTGAACAAACCTTTTTGGTTTTTAGTTTTTC
TGTCATTAGCTGGAGCAGCGCAAGGACTTGTTGTGACAGGCGTCACTTTT
ACCATATTAACTTCGATAGAAAAACAATATGGATTTTCAAGTTCGCACGT
GGGATTGTTTGGAACGTTATATGATGCCGGTTTTGGTATATTATGTTTGT
TTGTGGGCTTTATTGGCCATCGTCACAAACCACGCTGGATAGGGATAGGG
ATGATAGTAATGGCTTTGGGTGCTGTTTTGTTATCCGTACCAAAATATAT
TATCGGGGGTTATCATGCTGGTATCGAGAGAGATGCTGATTTTTGTCAAT
ATTCTAAAGATTCAAATTACACTCCCGAATGTGGTGGATCTTCTCCATGG
TATTATACGCTGATATTCTTAGCAGGGAACGCCATTATGGGTATGGGTGC
AACGCCATTGTATGTTTTAGGACCCGCCCATATTGATGAAATTACCAAGA
GAGGACAGAATGGATTGTACAACGGTGTATGGGCAACCGCAGCCGCACTG
GGACCAGCTATCGGGTTCATTATTGGACTACCCATTCTCAATACTTGGGT
TGATGTCGACGAGCCAGTGAACTTTACACTCAAGCCGGAAGATCGGAATT
GGGTAGGAGCGTGGTGGATGGGTTACCTCATCGGGGCCTTCATTCTCTTC
CTACCCGCCATCCCGATGTTGGGCTTCCCCCATGTCTTCCCAAACGCGCA
GCAGATAAAGGAGGAGAAACGAAAAAACGAAGATGATATTATAGAACACG
AACAGCCTGCAAAGCACACTTTGAAAACAGTATGGCCTGCAGTCAAGAGT
TTACTCAAGAATATTCCATTCTTATGTATTTGTTTAGCCTCAGCTTGTGA
GAGTTTGACAGTAGGAGGATTTTCAACTTTCTTCGCCAAACTGGTGGAAA
CGCAATTTAACTTCACTTCGGGAAATTCTTCACTCTACACAGGAGCAATC
ATCATTCCAGGAGCTGCAGGAGGGATGTTGGCCGGAGGAATCATTCTTTA
CCGTTACAAGTGGAATTGTAAGAAGATATTGAGAGTGAccaccattatgg
aattttGTGCGGTCGTTTGTGTTTTCTCCATGTTCATTGGTTGTTCCGGA
AGAGATGTGGTTGGTGGGAATGTACCCTACCGTAACACGTCAACAATCTC
GTTACAATCAGGGTGCAACGAATATTGTCAATGTTCCACAAGATATTATA
AACCAGTTTGTTCAGTGGCCGACCAACAAACCTATTACTCGCCTTGTCAC
GCTGGATGCTCAAACGAGAATAGCATCGATTTGAATGGTGAAAAGtattt
caaagattgtttaTGCTTGGGGACTGGTGCAGAGAATTTAGTGAAAAATG
GAAGATGCACTCCTGAATGTGATTTGTTTCCATTGTTCTTCGTTGGTGCA
TTCCTTATGATGTTCTTCACTTTCTTGAACAATGTTCCTATGCTAGTTGC
TATCTTCAGGGTTGTTCCAGAAGGACAAGGTTCATTTGCCATGGGTTTCC
AACAAATTTTCGTTCGTTTTCTTGGCTTCATTCCGGCTCCTACATTGTTC
GGAAGTTTAATCGATAAAAGCTGTAAATTATGGCATGAAGATGAATGCAC
AGATTCAAAAACAAGCTGTTTAGAATACGAAAATGAGGATTTCAGATATT
ATTTGTTTATTCTCGGTGCCGTTACAAAAGTACtgacttttatatttttg
tttgctGCATACAAGACATACACGCTACCACCAAATAAGCGTGATGATAG
TGTAAGACATCCACGAACTAACCAAATTACCGTGACCGAAAGATAGAGTT
AATGGAAATTGGGTTTTTTTGTGTAAATAttggttttcttctttcttata
TTTCATACATTGTGGTCATATAATGCGACAAAaataattcttaaaaattt
tcttgtACACTTTTCTGTAGATTTGtagatatttttatatttatcgACTC
TAGAGTCCACTTTCTTTGATTAAATTGAGACCTTGACCATGAC
Run BLAST on NCBI

transcript from alignment at sc0000049:724250..728172-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004939 ID=TCONS_00004939|Name=TCONS_00004939|organism=Clytia hemisphaerica|type=transcript|length=3923bp|location=Sequence derived from alignment at sc0000049:724250..728172- (Clytia hemisphaerica)
AAAAAACTTTATAAAACAAATAAAAACTGTCACGTGATGGAAAACCCAAC
TTTCACTTTTGAAGAAGTTAATGTGGGGAATAAAAACAAAGACGCTGAGT
CAGGGAATAATAATGAAAACATAGACAATAACAATTCACAAACACCCTAT
ATCGGACATAAAAAAGAAAAGGATCCTCGCTATGGCTGGTATCAATTTAC
ACCAAAATTTCTTCGCTTCTTGAACAAACCTTTTTGGTTTTTAGTTTTTC
TGTCATTAGCTGGAGCAGCGCAAGGACTTGTTGTGACAGGCGTCACTTTT
ACCATATTAACTTCGATAGAAAAACAATATGGATTTTCAAGTTCGCACGT
GGGATTGTTTGGAACGTTATATGATGCCGGTTTTGGTATATTATGTTTGT
TTGTGGGCTTTATTGGCCATCGTCACAAACCACGCTGGATAGGGATAGGG
ATGATAGTAATGGCTTTGGGTGCTGTTTTGTTATCCGTACCAAAATATAT
TATCGGGGGTTATCATGCTGGTATCGAGAGAGATGCTGATTTTTGTCAAT
ATTCTAAAGATTCAAATTACACTCCCGAATGTGGTGGATCTTCTCCATGG
TATTATACGCTGATATTCTTAGCAGGGAACGCCATTATGGGTATGGGTGC
AACGCCATTGTATGTTTTAGGACCCGCCCATATTGATGAAATTACCAAGA
GAGGACAGAATGGATTGTACAACGGTGTATGGGCAACCGCAGCCGCACTG
GGACCAGCTATCGGGTTCATTATTGGACTACCCATTCTCAATACTTGGGT
TGATGTCGACGAGGTTAGAATAATTCTTTTTCTGCATGGAAAGAGCTTCC
AAGAGTCAGCAATGATAAGAACTCTTAAGAATGAGAATTCTAACGAGGAT
TATTTTAAATATTGTCGATTAAAGCCAATTTTATAGTTATTTTGACATCT
TACAAAATCAAATTCCTGCTGTATGGCTTTTAAATCAGGAAATGTAAAAA
CCTTTGAATATAAAAACCAGCGTTTTACTCTGACGTAGTTCGAATTTTGA
TCAATTAAGTGATAAACCACAAGAACGTGTTTTTCGAAAATATCTAAATT
ACGAAACCTTTCATTTTCAGCCAGTGAACTTTACACTCAAGCCGGAAGAT
CGGAATTGGGTAGGAGCGTGGTGGATGGGTTACCTCATCGGGGCCTTCAT
TCTCTTCCTACCCGCCATCCCGATGTTGGGCTTCCCCCATGTCTTCCCAA
ACGCGCAGCAGATAAAGGAGGAGAAACGAAAAAACGAAGATGATATTATA
GAACACGAACAGCCTGCAAAGCACACTTTGAAAACAGTATGGCCTGCAGT
CAAGAGTTTACTCAAGAATATTCCATTCTTATGTATTTGTTTAGCCTCAG
CTTGTGAGAGTTTGACAGTAGGAGGATTTTCAACTTTCTTCGCCAAACTG
GTGGAAACGCAATTTAACTTCACTTCGGGAAATTCTTCACTCTACACAGG
AGCAATCATCATTCCAGGTAAGATATGTTTGGTCTTTAGTCTTAAAAGAT
GACAACTTTAATCCCCAAAAGAGAAAACTATTTGTAAGACAATTGGAGTT
ATCATATGAGTCAGTTCTGAATGTTAACGGTTAAAAAGTCACCACCGGTA
CTTCCTTGTCATACACAGCTCTTCCATTATCATGAGCTATATAAAAGAAA
AAGAAAAAATAGGTAATTTTCGATAAAACGGTGTTACTGATGCGTATATT
GTAAGCCTTGTCCCAGGTTTTGTTTGGATGGCTATAGTGTTAAAAGGGGC
TGAAGATTAGTAACAGTAACAGTAAAGAAAAATATTCCTGTAAGCAAGGC
TTCTTCGACGATTCAGAATCTCTTTTCCATCCCTTTCAGGAGCTGCAGGA
GGGATGTTGGCCGGAGGAATCATTCTTTACCGTTACAAGTGGAATTGTAA
GAAGATATTGAGAGTGACCACCATTATGGAATTTTGTGCGGTCGTTTGTG
TTTTCTCCATGTTCATTGGTTGTTCCGGAAGAGATGTGGTTGGTGGGAAT
GTACCCTACCGTAACACGTGAGTTGACTTTTTTACTCCTCAAACTGTTTT
TTTTTTTTAGAAGAACCGAATACCTTTTAATTATAGCACGTCAATTCATG
TATAAATCCAATAGGGTAAACAATCTTTATAAGTTTGTTGAAAGTCTGTT
GACTACCTAAATTTATATAGGCCCATTATACAGAGGTGGGACAATTATGC
TATTTTTTGCGCTATTAGCATGCTATCTGAATTCATTCTATTTTTCGGTT
TTGACCTTATCTCTCAATCTTTAAAATATTTTGAATTTAATGTTGTTACT
ACTGAAACAAAGTCCGTAAGATTTTTCATCAGTGAGAAAAATCATCGCTT
TCATCGGTTTCAAAAGAAATACCTCGGTTAAAGATATGTATACTTCATGG
CTCTCTGAAATGGTAATCTTACTTGAAAGAAAGTTAAACTCTCCCTTGTT
TTTATTTCCAGGTCAACAATCTCGTTACAATCAGGGTGCAACGAATATTG
TCAATGTTCCACAAGATATTATAAACCAGTTTGTTCAGTGGCCGACCAAC
AAACCTATTACTCGCCTTGTCACGCTGGATGCTCAAACGAGAATAGCATC
GATTTGAATGGTGAAAAGGTACGTCATTATCATGTGTGACTTCGCATTCC
TTGATTCCTCAAAAACCTAATCAATATTTCACTCCTAATCTCAAATAGTT
TCAATCGCGGAATTAGTTGTTGTCTCCATCGGGCTTAGCCAATGGTCAAA
CCAAACCAATTCTTATTGCCAACACTGTGCAATAAAAAGCAGTGGTCTTC
TTCGAACTTATAATAATTGACCAAAAAAATTACAATAAGTGCAAGACTTT
TGTTTACTTCATGTGAAAATGTCCGACCTTCAGCAGACACGGAACTTATT
ATTGTTAATGACTTTAATACTCGGTATTTCAGTATTTCAAAGATTGTTTA
TGCTTGGGGACTGGTGCAGAGAATTTAGTGAAAAATGGAAGATGCACTCC
TGAATGTGATTTGTTTCCATTGTTCTTCGTTGGTGCATTCCTTATGATGT
TCTTCACTTTCTTGAACAATGTTCCTATGCTAGTTGCTATCTTCAGGTAA
GTTCTGATATGATATGTCTCCCGAACTATAAAGTATTCTCATGATTCAAG
ATCAGTTTCACTTGGCTACTTTCATCTTTGAGCACTTACAAGTTGTTAGG
ATCAACTTGATGATGGTGGTAAGGAAAGTGGACCAAAAGAACCATCTAAC
CAATATGTCAAGTTTTCACATTTTCTCACAGTGCAGTTAATAAACATTCC
ATTAGCTGATTATCAAATATTTCAATCTTTTCATTCCAGGGTTGTTCCAG
AAGGACAAGGTTCATTTGCCATGGGTTTCCAACAAATTTTCGTTCGTTTT
CTTGGCTTCATTCCGGCTCCTACATTGTTCGGAAGTTTAATCGATAAAAG
CTGTAAATTATGGCATGAAGATGAATGCACAGATTCAAAAACAAGCTGTT
TAGAATACGAAAATGAGGATTTCAGATATTATTTGTTTATTCTCGGTGCC
GTTACAAAAGTACTGACTTTTATATTTTTGTTTGCTGCATACAAGACATA
CACGCTACCACCAAATAAGCGTGATGATAGTGTAAGACATCCACGAACTA
ACCAAATTACCGTGACCGAAAGATAGAGTTAATGGAAATTGGGTTTTTTT
GTGTAAATATTGGTTTTCTTCTTTCTTATATTTCATACATTGTGGTCATA
TAATGCGACAAAAATAATTCTTAAAAATTTTCTTGTACACTTTTCTGTAG
ATTTGTAGATATTTTTATATTTATCGACTCTAGAGTCCACTTTCTTTGAT
TAAATTGAGACCTTGACCATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002791XLOC_002791Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004939-exon-sc0000049-1575043694:727360..728172TCONS_00004939-exon-sc0000049-1575043694:727360..728172Clytia hemisphaericaexon
TCONS_00004939-exon-sc0000049-1575043694:726656..727052TCONS_00004939-exon-sc0000049-1575043694:726656..727052Clytia hemisphaericaexon
TCONS_00004939-exon-sc0000049-1575043694:726106..726283TCONS_00004939-exon-sc0000049-1575043694:726106..726283Clytia hemisphaericaexon
TCONS_00004939-exon-sc0000049-1575043694:725505..725661TCONS_00004939-exon-sc0000049-1575043694:725505..725661Clytia hemisphaericaexon
TCONS_00004939-exon-sc0000049-1575043694:725027..725190TCONS_00004939-exon-sc0000049-1575043694:725027..725190Clytia hemisphaericaexon
TCONS_00004939-exon-sc0000049-1575043694:724250..724783TCONS_00004939-exon-sc0000049-1575043694:724250..724783Clytia hemisphaericaexon
TCONS_00004939-exon-sc0000049-1510915933:727360..728172TCONS_00004939-exon-sc0000049-1510915933:727360..728172Clytia hemisphaericaexon
TCONS_00004939-exon-sc0000049-1510915933:726656..727052TCONS_00004939-exon-sc0000049-1510915933:726656..727052Clytia hemisphaericaexon
TCONS_00004939-exon-sc0000049-1510915933:726106..726283TCONS_00004939-exon-sc0000049-1510915933:726106..726283Clytia hemisphaericaexon
TCONS_00004939-exon-sc0000049-1510915933:725505..725661TCONS_00004939-exon-sc0000049-1510915933:725505..725661Clytia hemisphaericaexon
TCONS_00004939-exon-sc0000049-1510915933:725027..725190TCONS_00004939-exon-sc0000049-1510915933:725027..725190Clytia hemisphaericaexon
TCONS_00004939-exon-sc0000049-1510915933:724250..724783TCONS_00004939-exon-sc0000049-1510915933:724250..724783Clytia hemisphaericaexon
TCONS_00004939-exon-sc0000049-1491911889:727360..728172TCONS_00004939-exon-sc0000049-1491911889:727360..728172Clytia hemisphaericaexon
TCONS_00004939-exon-sc0000049-1491911889:726656..727052TCONS_00004939-exon-sc0000049-1491911889:726656..727052Clytia hemisphaericaexon
TCONS_00004939-exon-sc0000049-1491911889:726106..726283TCONS_00004939-exon-sc0000049-1491911889:726106..726283Clytia hemisphaericaexon
TCONS_00004939-exon-sc0000049-1491911889:725505..725661TCONS_00004939-exon-sc0000049-1491911889:725505..725661Clytia hemisphaericaexon
TCONS_00004939-exon-sc0000049-1491911889:725027..725190TCONS_00004939-exon-sc0000049-1491911889:725027..725190Clytia hemisphaericaexon
TCONS_00004939-exon-sc0000049-1491911889:724250..724783TCONS_00004939-exon-sc0000049-1491911889:724250..724783Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:724250..728172 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.57155	1.79228	0.785317	0.38623	35.3171	22.9548	27.4469	26.7476	22.3907	24.7597	27.1974	21.9375	46.0538	31.5865	2.26353	19.0872	4.63496	4.93163	23.6068	57.8574	15.6312	15.5806	7.67617	9.70554	7.71056	5.08016	54.1811	51.0098	1.78775	1.86989
Blast
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BLAST of TCONS_00004939 vs. Swiss-Prot (Human)
Match: SO4A1 (Solute carrier organic anion transporter family member 4A1 OS=Homo sapiens GN=SLCO4A1 PE=1 SV=2)

HSP 1 Score: 320.472 bits (820), Expect = 2.946e-97
Identity = 210/631 (33.28%), Postives = 326/631 (51.66%), Query Frame = 1 
Query:  184 GWYQFTPKFLRFLNKPFWFLVFLSLAGAAQGLVVTGVTFTILTSIEKQYGFSSSHVGLFGTLYDAGFGILCLFVGFIGHR-HKPRWIGIGMIVMALGAVLLSVPKYIIGGYHAGIERDADFCQYSKDSNYTPECGGSSPWYYTLIFLAGNAIMGMGATPLYVLGPAHIDEITKRGQNGLYNGVWATAAALGPAIGFIIGLPILNTWVDVDEPVNFTLKPEDRNWVGAWWMGYLIGAFILFLPAIPMLGFPHVFPNAQQ-----IKEEKRKNEDDIIEHEQPA-KHTLKTVWPAVKSLLKNIPFLCICLASACESLTVGGFSTFFAKLVETQFNFTSGNSSLYTXXXXXXXXXXXXXXXXXXLYRYKWNCKKILRVTTIMEFCAVVCVFSMF------IGCSGRDVVGGNVPYRNT----STISLQSGCNEYCQCSTRYYKPVCSVADQQTYYSPCHAGCSNENSIDLNGEKYFKDCLCLGTGAENL------VKNGRCTPECDLFPLFFVGAFLMMFFTFLNNVPMLVAIFRVVPEGQGSFAMGFQQIFVRFLGFIPAPTLFGSLIDKSCKLWHEDECTDSKTSCLEYENEDFRYYLFILGAVTKVLTFIFLFAAYKTYTLPPNKRDDSVR 2007
            GW+ F P  L+ LN P   L FL  A   QG+ V G   T++TS+E++Y   S   GL  + YD    +   FV + G   HKPRW+G G+++M  G+++ ++P +  G Y   ++     C  +  +       G S   Y L+F+ G  + G+GATPLY LG  ++DE  K   + +Y  ++ TAA LGPA G++IG  +LN + ++      T   E   WVGAWW+G+L      F  A+P+LG+P   P +Q+       E  +  +    E   P    T++ +  ++  LLKN  F+ +CLA A E+  + G STF  K +E+QF+ ++  ++   G +++P   GG   GG  + + +      LR + +++FC    V S+       + C    + G    Y  +      ++L + CN  C C   +Y PVC  +D   Y+S CHAGC      +++G+K ++DC C+    +NL         G+CT  C   PL  V  F+++FFTFL+++P L A  R V + Q SFA+G Q I VR LG IP P  FG +IDK+C LW +D+C   + SCL Y+N     Y+ I+G + KVL  +F   A   Y  P ++  D + 
Sbjct:   87 GWWAFAPPCLQVLNTPKGILFFLCAAAFLQGMTVNGFINTVITSLERRYDLHSYQSGLIASSYDIAACLCLTFVSYFGGSGHKPRWLGWGVLLMGTGSLVFALPHFTAGRYEVELDAGVRTCPANPGAVCADSTSGLS--RYQLVFMLGQFLHGVGATPLYTLGVTYLDENVKSSCSPVYIAIFYTAAILGPAAGYLIGGALLNIYTEMGRRTELTT--ESPLWVGAWWVGFLGSGAAAFFTAVPILGYPRQLPGSQRYAVMRAAEMHQLKDSSRGEASNPDFGKTIRDLPLSIWLLLKNPTFILLCLAGATEATLITGMSTFSPKFLESQFSLSASEAATLFGYLVVPAGGGGTFLGGFFVNKLR------LRGSAVIKFCLFCTVVSLLGILVFSLHCPSVPMAGVTASYGGSLLPEGHLNLTAPCNAACSCQPEHYSPVCG-SDGLMYFSLCHAGCPAATETNVDGQKVYRDCSCI---PQNLSSGFGHATAGKCTSTCQRKPLLLVFIFVVIFFTFLSSIPALTATLRCVRDPQRSFALGIQWIVVRILGGIPGPIAFGWVIDKACLLW-QDQC-GQQGSCLVYQNSAMSRYILIMGLLYKVLGVLFFAIACFLYK-PLSESSDGLE 700
The following BLAST results are available for this feature:
BLAST of TCONS_00004939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SO4A12.946e-9733.28Solute carrier organic anion transporter family me... [more]
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