TCONS_00004931 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004931
Unique NameTCONS_00004931
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004931 ID=TCONS_00004931|Name=TCONS_00004931|organism=Clytia hemisphaerica|type=transcript|length=2386bp
ATAAAGTCATAATTCGATTTAAATCTCAGCTTTGTGGTAACTATCATAAG
CACACGTAAGTATCATCagaataaaatattaaaaaaaattgatgctTGCA
TGACTGATGGTTGGTGTGTGTTTTAAAGTGAGACTTCAGATACTGTAAGC
CTTTCTTCATTATGTAAGTATAACTTATTACAGGGGACAATCAGGTCAAT
TGTGGAGCTCAGATGATGCCAATTTGGGGCCTTGTGGTGAAACCTCTGAA
actatttttatgaaaattattttacaatATTTTGGTATGACAACGGTTTT
AAATTGCCTGCGAGTATTTTACACGAGACAAAATTCTATGCTGACTCATC
GTTTTTATCTtagaacagaaaaaaaaactttataaaacaaataaaaactg
tCACGTGATGGAAAACCCAACTTTCACTTTTGAAGAAGTTAATGTGGGGA
ATAAAAACAAAGACGCTGAGTCAGGGAATAATAATGAAAACATAGACAAT
AACAATTCACAAACACCCTATATCGGacataaaaaagaaaaggatCCTCG
CTATGGCTGGTATCAATttacaccaaaatttcttcGCTTCTTGAACAAAC
CTTTTTGGTTTTTAGTTTTTCTGTCATTAGCTGGAGCAGCGCAAGGACTT
GTTGTGACAGGCGTCACTTTTACCATATTAACTTCGATAGAAAAACAATA
TGGATTTTCAAGTTCGCACGTGGGATTGTTTGGAACGTTATATGATGCCG
GTTTTGGTATATTATGTTTGTTTGTGGGCTTTATTGGCCATCGTCACAAA
CCACGCTGGATAGGGATAGGGATGATAGTAATGGCTTTGGGTGCTGTTTT
GTTATCCGTACCAAAATATATTATCGGGGGTTATCATGCTGGTATCGAGA
GAGATGCTGATTTTTGTCAATATTCTAAAGATTCAAATTACACTCCCGAA
TGTGGTGGATCTTCTCCATGGTATTATACGCTGATATTCTTAGCAGGGAA
CGCCATTATGGGTATGGGTGCAACGCCATTGTATGTTTTAGGACCCGCCC
ATATTGATGAAATTACCAAGAGAGGACAGAATGGATTGTACAACGGTGTA
TGGGCAACCGCAGCCGCACTGGGACCAGCTATCGGGTTCATTATTGGACT
ACCCATTCTCAATACTTGGGTTGATGTCGACGAGCCAGTGAACTTTACAC
TCAAGCCGGAAGATCGGAATTGGGTAGGAGCGTGGTGGATGGGTTACCTC
ATCGGGGCCTTCATTCTCTTCCTACCCGCCATCCCGATGTTGGGCTTCCC
CCATGTCTTCCCAAACGCGCAGCAGATAAAGGAGGAGAAACGAAAAAACG
AAGATGATATTATAGAACACGAACAGCCTGCAAAGCACACTTTGAAAACA
GTATGGCCTGCAGTCAAGAGTTTACTCAAGAATATTCCATTCTTATGTAT
TTGTTTAGCCTCAGCTTGTGAGAGTTTGACAGTAGGAGGATTTTCAACTT
TCTTCGCCAAACTGGTGGAAACGCAATTTAACTTCACTTCGGGAAATTCT
TCACTCTACACAGGAGCAATCATCATTCCAGGAGCTGCAGGAGGGATGTT
GGCCGGAGGAATCATTCTTTACCGTTACAAGTGGAATTGTAAGAAGATAT
TGAGAGTGAccaccattatggaattttGTGCGGTCGTTTGTGTTTTCTCC
ATGTTCATTGGTTGTTCCGGAAGAGATGTGGTTGGTGGGAATGTACCCTA
CCGTAACACGTCAACAATCTCGTTACAATCAGGGTGCAACGAATATTGTC
AATGTTCCACAAGATATTATAAACCAGTTTGTTCAGTGGCCGACCAACAA
ACCTATTACTCGCCTTGTCACGCTGGATGCTCAAACGAGAATAGCATCGA
TTTGAATGGTGAAAAGtatttcaaagattgtttaTGCTTGGGGACTGGTG
CAGAGAATTTAGTGAAAAATGGAAGATGCACTCCTGAATGTGATTTGTTT
CCATTGTTCTTCGTTGGTGCATTCCTTATGATGTTCTTCACTTTCTTGAA
CAATGTTCCTATGCTAGTTGCTATCTTCAGGGTTGTTCCAGAAGGACAAG
GTTCATTTGCCATGGGTTTCCAACAAATTTTCGTTCGTTTTCTTGGCTTC
ATTCCGGCTCCTACAATGTTCGGACGATTGATCGATGAAAGTTGTAAATT
ATGGCATAAAGAAGAATGTACGGGCGAAACGACGAGCTGTTTagaataca
aaaataaagacTTCAGGAATTACTTATTTGCTATGGGGTTGGTAATCAAA
GTGATTGGACTGATCTTCACGTTGGCCGCATATAAAGTGTACAAATTACC
GGATCAGACATCACCACAAGTTTACATGGAGAACAA
Run BLAST on NCBI

transcript from alignment at sc0000049:714228..728543-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004931 ID=TCONS_00004931|Name=TCONS_00004931|organism=Clytia hemisphaerica|type=transcript|length=14316bp|location=Sequence derived from alignment at sc0000049:714228..728543- (Clytia hemisphaerica)
ATAAAGTCATAATTCGATTTAAATCTCAGCTTTGTGGTAACTATCATAAG
CACACGTAAGTATCATCAGAATAAAATATTAAAAAAAATTGATGCTTGCA
TGACTGATGGTTGGTGTGTGTTTTAAAGTGAGACTTCAGATACTGTAAGC
CTTTCTTCATTATGTAAGTATAACTTATTACAGGGGACAATCAGGTCAAT
TGTGGAGCTCAGATGATGCCAATTTGGGGCCTTGTGGTGAAACCTCTGAA
ACTATTTTTATGAAAATTATTTTACAATATTTTGGTATGACAACGGTTTT
AAATTGCCTGCGAGTATTTTACACGAGACAAAATTCTATGCTGACTCATC
GTTTTTATCTTAGAACAGAAAAAAAAACTTTATAAAACAAATAAAAACTG
TCACGTGATGGAAAACCCAACTTTCACTTTTGAAGAAGTTAATGTGGGGA
ATAAAAACAAAGACGCTGAGTCAGGGAATAATAATGAAAACATAGACAAT
AACAATTCACAAACACCCTATATCGGACATAAAAAAGAAAAGGATCCTCG
CTATGGCTGGTATCAATTTACACCAAAATTTCTTCGCTTCTTGAACAAAC
CTTTTTGGTTTTTAGTTTTTCTGTCATTAGCTGGAGCAGCGCAAGGACTT
GTTGTGACAGGCGTCACTTTTACCATATTAACTTCGATAGAAAAACAATA
TGGATTTTCAAGTTCGCACGTGGGATTGTTTGGAACGTTATATGATGCCG
GTTTTGGTATATTATGTTTGTTTGTGGGCTTTATTGGCCATCGTCACAAA
CCACGCTGGATAGGGATAGGGATGATAGTAATGGCTTTGGGTGCTGTTTT
GTTATCCGTACCAAAATATATTATCGGGGGTTATCATGCTGGTATCGAGA
GAGATGCTGATTTTTGTCAATATTCTAAAGATTCAAATTACACTCCCGAA
TGTGGTGGATCTTCTCCATGGTATTATACGCTGATATTCTTAGCAGGGAA
CGCCATTATGGGTATGGGTGCAACGCCATTGTATGTTTTAGGACCCGCCC
ATATTGATGAAATTACCAAGAGAGGACAGAATGGATTGTACAACGGTGTA
TGGGCAACCGCAGCCGCACTGGGACCAGCTATCGGGTTCATTATTGGACT
ACCCATTCTCAATACTTGGGTTGATGTCGACGAGGTTAGAATAATTCTTT
TTCTGCATGGAAAGAGCTTCCAAGAGTCAGCAATGATAAGAACTCTTAAG
AATGAGAATTCTAACGAGGATTATTTTAAATATTGTCGATTAAAGCCAAT
TTTATAGTTATTTTGACATCTTACAAAATCAAATTCCTGCTGTATGGCTT
TTAAATCAGGAAATGTAAAAACCTTTGAATATAAAAACCAGCGTTTTACT
CTGACGTAGTTCGAATTTTGATCAATTAAGTGATAAACCACAAGAACGTG
TTTTTCGAAAATATCTAAATTACGAAACCTTTCATTTTCAGCCAGTGAAC
TTTACACTCAAGCCGGAAGATCGGAATTGGGTAGGAGCGTGGTGGATGGG
TTACCTCATCGGGGCCTTCATTCTCTTCCTACCCGCCATCCCGATGTTGG
GCTTCCCCCATGTCTTCCCAAACGCGCAGCAGATAAAGGAGGAGAAACGA
AAAAACGAAGATGATATTATAGAACACGAACAGCCTGCAAAGCACACTTT
GAAAACAGTATGGCCTGCAGTCAAGAGTTTACTCAAGAATATTCCATTCT
TATGTATTTGTTTAGCCTCAGCTTGTGAGAGTTTGACAGTAGGAGGATTT
TCAACTTTCTTCGCCAAACTGGTGGAAACGCAATTTAACTTCACTTCGGG
AAATTCTTCACTCTACACAGGAGCAATCATCATTCCAGGTAAGATATGTT
TGGTCTTTAGTCTTAAAAGATGACAACTTTAATCCCCAAAAGAGAAAACT
ATTTGTAAGACAATTGGAGTTATCATATGAGTCAGTTCTGAATGTTAACG
GTTAAAAAGTCACCACCGGTACTTCCTTGTCATACACAGCTCTTCCATTA
TCATGAGCTATATAAAAGAAAAAGAAAAAATAGGTAATTTTCGATAAAAC
GGTGTTACTGATGCGTATATTGTAAGCCTTGTCCCAGGTTTTGTTTGGAT
GGCTATAGTGTTAAAAGGGGCTGAAGATTAGTAACAGTAACAGTAAAGAA
AAATATTCCTGTAAGCAAGGCTTCTTCGACGATTCAGAATCTCTTTTCCA
TCCCTTTCAGGAGCTGCAGGAGGGATGTTGGCCGGAGGAATCATTCTTTA
CCGTTACAAGTGGAATTGTAAGAAGATATTGAGAGTGACCACCATTATGG
AATTTTGTGCGGTCGTTTGTGTTTTCTCCATGTTCATTGGTTGTTCCGGA
AGAGATGTGGTTGGTGGGAATGTACCCTACCGTAACACGTGAGTTGACTT
TTTTACTCCTCAAACTGTTTTTTTTTTTTAGAAGAACCGAATACCTTTTA
ATTATAGCACGTCAATTCATGTATAAATCCAATAGGGTAAACAATCTTTA
TAAGTTTGTTGAAAGTCTGTTGACTACCTAAATTTATATAGGCCCATTAT
ACAGAGGTGGGACAATTATGCTATTTTTTGCGCTATTAGCATGCTATCTG
AATTCATTCTATTTTTCGGTTTTGACCTTATCTCTCAATCTTTAAAATAT
TTTGAATTTAATGTTGTTACTACTGAAACAAAGTCCGTAAGATTTTTCAT
CAGTGAGAAAAATCATCGCTTTCATCGGTTTCAAAAGAAATACCTCGGTT
AAAGATATGTATACTTCATGGCTCTCTGAAATGGTAATCTTACTTGAAAG
AAAGTTAAACTCTCCCTTGTTTTTATTTCCAGGTCAACAATCTCGTTACA
ATCAGGGTGCAACGAATATTGTCAATGTTCCACAAGATATTATAAACCAG
TTTGTTCAGTGGCCGACCAACAAACCTATTACTCGCCTTGTCACGCTGGA
TGCTCAAACGAGAATAGCATCGATTTGAATGGTGAAAAGGTACGTCATTA
TCATGTGTGACTTCGCATTCCTTGATTCCTCAAAAACCTAATCAATATTT
CACTCCTAATCTCAAATAGTTTCAATCGCGGAATTAGTTGTTGTCTCCAT
CGGGCTTAGCCAATGGTCAAACCAAACCAATTCTTATTGCCAACACTGTG
CAATAAAAAGCAGTGGTCTTCTTCGAACTTATAATAATTGACCAAAAAAA
TTACAATAAGTGCAAGACTTTTGTTTACTTCATGTGAAAATGTCCGACCT
TCAGCAGACACGGAACTTATTATTGTTAATGACTTTAATACTCGGTATTT
CAGTATTTCAAAGATTGTTTATGCTTGGGGACTGGTGCAGAGAATTTAGT
GAAAAATGGAAGATGCACTCCTGAATGTGATTTGTTTCCATTGTTCTTCG
TTGGTGCATTCCTTATGATGTTCTTCACTTTCTTGAACAATGTTCCTATG
CTAGTTGCTATCTTCAGGTAAGTTCTGATATGATATGTCTCCCGAACTAT
AAAGTATTCTCATGATTCAAGATCAGTTTCACTTGGCTACTTTCATCTTT
GAGCACTTACAAGTTGTTAGGATCAACTTGATGATGGTGGTAAGGAAAGT
GGACCAAAAGAACCATCTAACCAATATGTCAAGTTTTCACATTTTCTCAC
AGTGCAGTTAATAAACATTCCATTAGCTGATTATCAAATATTTCAATCTT
TTCATTCCAGGGTTGTTCCAGAAGGACAAGGTTCATTTGCCATGGGTTTC
CAACAAATTTTCGTTCGTTTTCTTGGCTTCATTCCGGCTCCTACATTGTT
CGGAAGTTTAATCGATAAAAGCTGTAAATTATGGCATGAAGATGAATGCA
CAGATTCAAAAACAAGCTGTTTAGAATACGAAAATGAGGATTTCAGATAT
TATTTGTTTATTCTCGGTGCCGTTACAAAAGTACTGACTTTTATATTTTT
GTTTGCTGCATACAAGACATACACGCTACCACCAAATAAGCGTGATGATA
GTGTAAGACATCCACGAACTAACCAAATTACCGTGACCGAAAGATAGAGT
TAATGGAAATTGGGTTTTTTTGTGTAAATATTGGTTTTCTTCTTTCTTAT
ATTTCATACATTGTGGTCATATAATGCGACAAAAATAATTCTTAAAAATT
TTCTTGTACACTTTTCTGTAGATTTGTAGATATTTTTATATTTATCGACT
CTAGAGTCCACTTTCTTTGATTAAATTGAGACCTTGACCATGACAGTCTC
TGAAAAAAATAGTGTTATAATTTTCAAGTAAGAAAAATCACAACATTTTT
GCAACAAATATTTCGCCCTTGAATTTGATATAAAGGACTCCTAATGAGGG
TAACGGAAGCTGCTTCCATACTAAATTTGTTTTTCATTCTGTGTTTGAAT
GGATAATCTTTGACATTAAAAGTTGAGATGCTCTCAGCAAGAGATTATGG
ATTCAAGCTTTAAGTTTTTCTTTCATTTAGTATAATAGTTTAGAATCGAA
ATTTATAAAATAAAATCGAAAGCGTGGGCTTGAAAACTTGCTCGTCCATA
AAAGGCGCTGGCAGCCAGTTTGATGAGCTTATTTCATTTCTTGTAAATAC
TTTTTCTTTTTTTATCTTTATCGCTATCTTCGTATATATTTTTCTATTTA
AGAATTTCTATTTTGTCATAATTTGTTTGGTTCATAACAAACATAAAATA
TCATAAACACTTGCAATTACATGAATTGTTTTTGTCTACTATAAATCCAG
TCCAAAGATATTTTGGTATACCACAACACCCCGGTGGAAAAATAGGCCAA
AAAATCGTCCCCGGCGGAAAAAATCTCCTACAATTTCAACCCTACTGCGA
AATTGCTCTATGATTTTATCCCCATTGAAAACTGAATGTAAAAAATTGCA
CTCCAAAACCATCCCCACTGGAATTTTCGAGCTGGAAACAATAGATTTTC
TATCTCCATTGGCATTTTGATAGAAATTTTCATCCCCACTGGGGGAAAAA
GTTCCACAGGGGTGTAGCATTACCTCTAACTAACGGGTGTTTCAAAAAAG
TGTACAAGTTTGAATTAAGATTATGAGAAAACTAAAAATATTATAAACCT
AAACTTTTTCATCATCAGAAAGAAGAAAAATAACTTGAATTTTGAGCTAT
CATACTTTAAATTTGCTTCACGTGGTCAAAAGTTATGATGAAAGTTCAAA
AAGATTCTCTTTCGAAAGAGCGTGGTTTTTGAGAAAAACCTTTGTGGATC
GATTCTTTTTTGTATAAAAAAAGAGTGTTTTTCTTATGATGCGACACAGT
CAGTTTAAGATTTTTCGATTAAAATGATTTTTTTTTATTCTTTCGATGAT
CAAAACATTCGAAGACCCTCGAATCTTTAGTTCTTGAAAAAGTATCAAAA
AGCTTTTTTCAGTGTTTTGTAATCTCCTCTTTCTTCTCAATGACGTTTTT
TCTGAAGAGAATTTTTTCGAATTTTCTTTATATAACTTTTGAACGGAGTA
GTACTCCCTCCGTCCATCCACTCGTTCCGAGATTTTCCGATTTTTTTCCT
CACCTCGGAACTATCATAAAATATTTGTTGTATTTAACTCGAAGTCATGC
GATAACAGAAGTACGTAATGAAAGGTAGAATTGGTCCTTATTAGCCTTAG
GCCTTATTAACTTATGGAATACGTGCAATTCATTGGTTCAAAACACGTTT
AGAAATATTTTAGAACTATGGGTTTGCCTCTGAAACATCCGTCGTGAAGA
ATGACGTTCGAAACGTTGGAAATTTAGTATTGGCCTGTAACATTTCCATT
TCTGATGAGTTTGTTTGCTGTTTGTTTTTGATTGGTGAATATCCCTTTTT
GTCGAAATTCAAACTCAAATTTATATAGAAAATACACGACTAGGAAAAAG
GTGACGTTATAAAAAAATGTCAGATCAGATGATTAAAGTTTAATACAAGC
ACCTTTTTGCAGCGGATAACTGAATTCTTATAATACATTTCAAAATTTTA
TAAAAATAGTTTCAACAATTTTTAGAACCACCTCCCACTTTGACACCCCC
TTCTCACTGACCCGGTAGGATTTTCTCATCCAGTGGGGGTAAAAATAACG
GACTAAAACTCGATGGGGATTGATAATTCTTATATTTTTTATAGCTGGGG
GATTCTTTCTTCTCAAGTCAGAAAATTCAGTGGGTATGGAAAAAATTGCA
TGATATTTTGCAGTGAGGATTGGCTTATTTGATTATATTTAGTGGGAACA
AAAATTGGAGGATAATTTTCCACCGGGGATGATATTTTGGCTATTTTTTC
CAGTGGGAAGGGAAGACACACTTGGAGGTCTGTGAGAAGGAGGTATACTT
TGAAGTAAGAATACCTATAGTCACTGCATTAAGTGGAAAAAGCTAGACAT
AGATGCATTTTGACCCGAATACAAAGGCAATCAGTTGTAGATGAGTTGTT
GGTTTTTGATTCACATTTACGTAAAATTTTACTTTGGCATTCTTATAGAT
TTATAAGTGACATTTTGACTAGCGTGGTACGTAAAGTTGCTCGATTATGA
ATACGTCACACCATAAGACAGCTATAAGATATTTGATATTGCTAGAAATG
TTTTCCTCACTGTTGACGGCACGCTACCACACAAACAAACATGAAATACC
TCATTTACAAGCGTTTTTAAATGGATTAAGAATTTTCTCCTGTAATAAGA
TACGTTGACTTGAACAATGAGAACAACACTTCCCATATTTTTGTCAAACT
ATAAAGAAAAGAAATAATTTTATAACTTGTTATGTGGACGAGAAATCTGA
AAGACTTCAATAATCAATATGTAGTGACTCTAGTTTTGGTTGCTCAAAAT
TTTCATGTTTATTAATGCGTGTTTGACAAGGACTTGATAGTTTTCTTGCA
TCATTGTTATCTGAGCTGAACAACAATATTGACATTTTTTGCAATAATAC
GAGCCAAAAATATGGATGAAAATAACATGACTGAGCAGAACATCCAACCT
GATGATTATTTGCTTGGTGAAGAGAAGAAGGGAAAAATGGAGGGGAAAGA
AGTCACTGCTGCAACTGAACGGAGATATGGCTGGAGATCATTTCGACCCG
ATTGTTTACAATTTCTTAACCGTCCAGTCTTCTTTTTGGCTAGCCTGTGC
CTTATTGTCTTTGGACAAGGGCTAGCATGTACGGGAATTAATAATACAAT
GATCACAAGCATCGAAAAACGCTATGGATTTAAAACAACGCAGATTGGGA
TTTTTTCGACACTTTTTCACACATCTGTCGGGACGTTTGTCAGCATTGTC
TGATATTTTGGACATCGTCATCGGCCTTTTACTTTAGGATTAGGATGTCT
TGCAATTGGACTGGGACTTTTTATCATCACAATTCCACATTATATGGTGT
CAAAATATCAAGCTGGCATTACCTTACTGTCAGATACATGTCGATTAAAC
ATGAGCAGTACTTCAATAGACACTTGTGAAGAACCAAGTGAAAATGGAAA
TCAATATTTTGGTATTTTTGCAATAGGTTATATCTGTATGGGACTTGGCG
TTACGCCCTTATATAGTCTGGGATACGCCCATTGTGAAGATATTGTAGGG
CGTGGCAAGAGTAGTCTCTATTTGAGCATTATGAGTGCGATCGCAGCGTT
TGGTCCAGCTGCTGGCTTCACAATTGCAAACCCCATTCTCAATGTTTTCG
TTGACTTAAAACAGGTGAGGTTTGACATTCTTGCCACGTCAATTCTTGAT
AGAGCCAACGGCCGTTTAATGTATAATTTTTCGCGTTATAAAAAAAGTTC
ATGTTTTTATAACTAGAGATAACGAGGTTTCAACATTTTTAAAACGTGGA
CCTACCTATTCTCACCCAGATGCAGTAGGATTTTTCCAGCCAGTGGGGGT
AAAATAACACACTGAAACTCGATGGGGGGGAGTATTCTCATGTTTTTTAT
TGCTGAGAAATTCGAATCCCATTGTCAAGTCAAAAAAATCAACGCGGTAG
ATAGAGGTTCCACCGGGTCTTTGAGAAAGGGATGTCCTATCCTAGCTGTG
ATGTTCTGATCAGACTTTGTGACATCATATCACAGCATACCCTCCCGATA
GATTTTCCTTTTAACAAAAGTAAATCTTAAGTTTCCTGTCTCTGTCTTTT
TAGCCTGAGAATTCCCATCTGACACCAGAAAACAGGAATTGGGTCGGTGC
GTGGTGGCTTGGTTACCTCGTTGGTGCTGGCATCGTTATTCTTGCTTCAA
TACCTATGTTAGGATTTCCCTCGCTCTTTGATGATACGGAGCGCGTTCGA
AAGGAGAAAAACAAATTTGCTGACACAAACAAAGAAGATCACGATCTCAA
CCACGATTTGAAGTCATTATGGCCGTCGACGAAAAGCTTGTTCAAGAATG
TTCCCTTCATTTTGATCTGTTTGGGAAACGCAATGGAGAGTTTTCTGATT
GGTGGTTTTGCAATTTTTCTTCCAAAGTTCATTGAGACACAGTTTCATCA
GACAGCAGCAAAGTCTGCTCTCCTCACGGGGGTCGTTATCATTCCAGGTA
AGTTACACGTGAGGTCTTTTGATCAGTATCCACTTTGCTGAACTCACAAC
CCATCTCTATTTTCTTTGCGTCTTTTCCACATTACTTATATCTTTGTCAA
TGCGTAACTATGTTTTTGTTGCTTTCAATTCACAATTTATGTCAATCCTA
CAAATTCAGTTTAAGCTTAGCTTTACAGTTTCAGTTTCATGTTAATACAT
TTTTGGTTCTGTGCATCAGTTTGGTTCTACCTTACCGTCGTTCTTTGTTA
AAGCCCTAAAAAAACTCTTCTCCAATAAAGAATGCATATTTCTTGATATT
TTGTATTACTTTCTAACAGTTCTGGCTTTTTGCAATAGAGTTTTTAAGTA
AATTGTGAAATTCACTTATTCTTCAGGAGCGGCAGTTGGCATGTTTACTG
GTGCATTTTTTGTGAAGAAATATAAATGGGATTGTAAAAGAATCATTCGC
AATGCATTTATTGTGTCCCTCCTTTCAACGATTGGCATGTCCAGTGTTTT
GATTGGCTGTCAACAAAGAACGGTGGTCGGTGGTGACGTGCTTTACGCAA
ACCAGTAAGTGTCGGTAATTATCCTTCAGAAATACNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNATCTTGCAATTGACATTGTTATGATTATACAATT
TATTATAGAATTCTTTAAATATTATATTGCTGCGGTGGCATGTTAGTGTA
AGCTATGTACTAGTTCAGTATTGAAAGGAGCTAAATGACATAAACGCTGA
TGGGGATACTTAGTTGCCAGGCTTCCAAATTTTTTATTGTTGACGTTTTC
AATTAGATAGAAATTTTGGTTTTGAATCTTCACAAATGATGATTTATTTT
CGGTAATCTTTCCAATTTAGGTATTATATCGGTTATAAAGACCGATTTCT
TACCCCTCTTAGTCACTGAATTCTTTTAGTTTTTACTTCCAGATCAACAA
TCTCGTTACAATCAGGGTGTAATGAATATTGTCAATGTTCCACAAGATAT
TATAAACCAGTTTGTTCAGTGGTCGACCAACAGACATATTTTTCACCTTG
CCACGCTGGATGCTCCGTTAACCATACTGTCATCTTGGATGGAAAGAAGG
TAACGAAAACAAAACGCTGTACCAACTTCACATTTTAAAATAAATCTTAA
TAACTGAAAAATTTTCAATACCCTGCAATTTCAGTCCAGCCACTGGGAAT
TCAAATTTGATCTCACCTCCATTCGAAATTCAATGTAAAAAATTACACCT
AAAAACCATCCCCATCCCCCTCATGAGGGATTCGATTTTAATAGCTTTTC
TATTGTATTTTCTGTCATGGCATTTAAGGAATCGTCTTTTTAAAGTCATT
ACTGAAAAGGTGATTCCCTCAAGTTCAACTTTGAAAACAATGAAAAAAGC
ATGGAATTTCTCAAAAAATGCAGTCATTTACTCTTAGGTGCCAAATAAAC
GGGGGGGTTCGAATAAACGGGAGGGTTGGAAAAATTTTTCAAATCAAATA
AACGGGGGGGACCTAATTACCGGGGGGTTGGAAAATGGACTTTTAAAAAC
CCTAAAAAGGGTCAAAATAGACTAAATTTAGGCTTTTTAGAGTAAAACAA
GAAACTTTCCTTTTGGGAGCTGGGATTTCTTTCAAAAATTAATAAACGGG
GGAGTCCTAATAACGTCCGGGGGGGTTGGAAAAAAATCAAGCGGGGAGGC
CCGTTTATTTGGCACCTAAGAGTAAGACTGAAACTTTTTGCCGTAGGGCT
AGGCTATGGCAAATCTCGCAAATTTTACAATCTATAGAAAGAACTGAATA
AGAAACGTGCAAATACTTTAAAAAATCAAAATGTAATTTTTTCTCTTTGT
TTTGGTTCCTTTGTTTGATTTGAAATGCCAGAAAAGGGGATTCCTTTGCT
CAAAATGGCATTTCAAATGCCAGCGAAATGCCAACACGCTGGCATCATTA
GGCATTTGACAAACAGAACAATTGTGCGGAACAATAGAATTCAAAAGAAT
ACTGCAAGCAATTACAAATGCCAGGCTGGTCTAAACGCAGCCACTGTCTT
TTTTAACCTTTGAACATTTTTTATCGCCATTGGGAATTCGATAAAAATAT
TTGTTCCTGCTGTTGTATAAAGTTCCACCGGGGCTGTGAGACAGGAGTGT
AGTAGACATTCGAGTATCAATAAAGAAAATTTTTTCTTTTAGAACTTCTA
GTGTTTTTAATTTAGCCTTAGTCGTTCTTTCTTTTCTTTTCTGAGTATTT
TTTTAAATGTAGATTCCGATGTTTGATCATTTTAGAATTACAAAAACTGT
TCTTGCGTGAGCCTCGGTGACGTTGTGGTAGATAGTCGATGCAAACCTGA
TTGCAAGCTGCTTCCCATCGCCTTACTCTGTATGTTTCTCTTTATGGCCA
TCACTCTATTCAACCATGTACCCATGTTGAATGTTGTTTTTAGGTAAGTG
CCCTCAAAATAGGACCTTCCCTCTAATTCTTTTTATTTTACTATTTTGAG
CTCAGTTTTTAGCAAAGAAATAAGGGGCTTAGAGGGAAACTTATTTGCCA
GCTACCAGATTCGCTTTATTTTACAGACCTTGAAAAGCCCTGGGGTTTAT
AGATAAAAATAAAAAATTTCGGTAAGTCCTGACCAAAATCGTTCATTTCA
ATCTCAAAAAACAATGAAAAAATATTTTTAATGACAAGAAAAAGACAATT
TTAGAGTTTATGGTCGGTGTTTAGAGGTCTAAAGACTCTTCTACGGAGCT
CCTCCTATAAACAGACAATACATCGACATATTCCAAAATATTTTTAGGGT
GGTTCCAAAAGGTCAAGGCTCGTTTGCAACTGGATTCTTACAGTTGTTTG
GACGTTTCCTTGGCTTCATACCGGCTCCAACAATGTTCGGACGATTGATC
GATGAAAGTTGTAAATTATGGCATAAAGAAGAATGTACGGGCGAAACGAC
GAGCTGTTTAGAATACAAAAATAAAGACTTCAGGTTAGTATCACAGTGTT
CTAAAAAGAAAAGACAAACGGACAAACGTTATTTATAGAAAGCGTGGGCC
AAAGGATTGGATCACGGAGAGTGGGTGCTGTCTGGTATTGGGCCTTGACG
TTATATAGTATTTCGAAATGTATGACAGCAGGTCCAAAAACTGCCGAATT
CAACGAAGAGAAGGTAAACAAAGAAGCGTGAAAAACCTGTTATAATATTT
TTAATGAAGTTTCTGACCCCGTCAGAGGCAAAATCGAAAAAGGATATATC
ACGCCCCTTTTACCCAATCAAAAGATGAGCAAAAGAATCCTCTAAGGTCT
CAGGAAACTTATCCTCAATACACCTTTTCGACCGTAGCCGCCAATTACCG
CGCAGGCATTTTATGTCCGCTTTATCCCACCAAAATCGCCCGGTCCTTTT
TTGACACATTTTTCTATTGTCTATAGGTTCGAAAATAGGAATGGGATGGT
TTTAGTGGGATAAAAATGCCCACGCGGCAATTGGCGGCTACGGTCGAAAA
GGTTTATTGTTTACTGATTCTATGCATTTTCTTCATTCTATTCCAGGAAT
TACTTATTTGCTATGGGGTTGGTAATCAAAGTGATTGGACTGATCTTCAC
GTTGGCCGCATATAAAGTGTACAAATTACCGGATCAGACATCACCACAAG
TTTACATGGAGAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002791XLOC_002791Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004931-exon-sc0000049-1575043694:727360..728543TCONS_00004931-exon-sc0000049-1575043694:727360..728543Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1575043694:726656..727052TCONS_00004931-exon-sc0000049-1575043694:726656..727052Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1575043694:726106..726283TCONS_00004931-exon-sc0000049-1575043694:726106..726283Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1575043694:725505..725661TCONS_00004931-exon-sc0000049-1575043694:725505..725661Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1575043694:725027..725190TCONS_00004931-exon-sc0000049-1575043694:725027..725190Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1575043694:724700..724783TCONS_00004931-exon-sc0000049-1575043694:724700..724783Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1575043694:714911..715012TCONS_00004931-exon-sc0000049-1575043694:714911..715012Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1575043694:714228..714347TCONS_00004931-exon-sc0000049-1575043694:714228..714347Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1510915933:727360..728543TCONS_00004931-exon-sc0000049-1510915933:727360..728543Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1510915933:726656..727052TCONS_00004931-exon-sc0000049-1510915933:726656..727052Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1510915933:726106..726283TCONS_00004931-exon-sc0000049-1510915933:726106..726283Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1510915933:725505..725661TCONS_00004931-exon-sc0000049-1510915933:725505..725661Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1510915933:725027..725190TCONS_00004931-exon-sc0000049-1510915933:725027..725190Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1510915933:724700..724783TCONS_00004931-exon-sc0000049-1510915933:724700..724783Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1510915933:714911..715012TCONS_00004931-exon-sc0000049-1510915933:714911..715012Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1510915933:714228..714347TCONS_00004931-exon-sc0000049-1510915933:714228..714347Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1491911889:727360..728543TCONS_00004931-exon-sc0000049-1491911889:727360..728543Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1491911889:726656..727052TCONS_00004931-exon-sc0000049-1491911889:726656..727052Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1491911889:726106..726283TCONS_00004931-exon-sc0000049-1491911889:726106..726283Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1491911889:725505..725661TCONS_00004931-exon-sc0000049-1491911889:725505..725661Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1491911889:725027..725190TCONS_00004931-exon-sc0000049-1491911889:725027..725190Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1491911889:724700..724783TCONS_00004931-exon-sc0000049-1491911889:724700..724783Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1491911889:714911..715012TCONS_00004931-exon-sc0000049-1491911889:714911..715012Clytia hemisphaericaexon
TCONS_00004931-exon-sc0000049-1491911889:714228..714347TCONS_00004931-exon-sc0000049-1491911889:714228..714347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:714228..728543 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.287283	0.0932484	0.124144	0.22042	10.1487	8.06703	8.29558	9.09989	2.78454	3.46035	2.79498	3.56573	5.51167	2.91097	0.131148	2.52035	0.143573	0.203887	3.88376	6.8961	2.18158	2.14422	0.508653	0.664363	2.36134	4.34511	5.12733	5.16283	0	0.293692
Blast
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BLAST of TCONS_00004931 vs. Swiss-Prot (Human)
Match: SO4A1 (Solute carrier organic anion transporter family member 4A1 OS=Homo sapiens GN=SLCO4A1 PE=1 SV=2)

HSP 1 Score: 326.635 bits (836), Expect = 3.920e-99
Identity = 210/626 (33.55%), Postives = 329/626 (52.56%), Query Frame = 3 
Query:  555 GWYQFTPKFLRFLNKPFWFLVFLSLAGAAQGLVVTGVTFTILTSIEKQYGFSSSHVGLFGTLYDAGFGILCLFVGFIGHR-HKPRWIGIGMIVMALGAVLLSVPKYIIGGYHAGIERDADFCQYSKDSNYTPECGGSSPWYYTLIFLAGNAIMGMGATPLYVLGPAHIDEITKRGQNGLYNGVWATAAALGPAIGFIIGLPILNTWVDVDEPVNFTLKPEDRNWVGAWWMGYLIGAFILFLPAIPMLGFPHVFPNAQQ-----IKEEKRKNEDDIIEHEQPA-KHTLKTVWPAVKSLLKNIPFLCICLASACESLTVGGFSTFFAKLVETQFNFTSGNSSLYTXXXXXXXXXXXXXXXXXXLYRYKWNCKKILRVTTIMEFCAVVCVFSMF------IGCSGRDVVGGNVPYRNT----STISLQSGCNEYCQCSTRYYKPVCSVADQQTYYSPCHAGCSNENSIDLNGEKYFKDCLCLGTGAENL------VKNGRCTPECDLFPLFFVGAFLMMFFTFLNNVPMLVAIFRVVPEGQGSFAMGFQQIFVRFLGFIPAPTMFGRLIDESCKLWHKEECTGETTSCLEYKNKDFRNYLFAMGLVIKVIGLIFTLAAYKVYKLPDQTS 2363
            GW+ F P  L+ LN P   L FL  A   QG+ V G   T++TS+E++Y   S   GL  + YD    +   FV + G   HKPRW+G G+++M  G+++ ++P +  G Y   ++     C  +  +       G S   Y L+F+ G  + G+GATPLY LG  ++DE  K   + +Y  ++ TAA LGPA G++IG  +LN + ++      T   E   WVGAWW+G+L      F  A+P+LG+P   P +Q+       E  +  +    E   P    T++ +  ++  LLKN  F+ +CLA A E+  + G STF  K +E+QF+ ++  ++   G +++P   GG   GG  + + +      LR + +++FC    V S+       + C    + G    Y  +      ++L + CN  C C   +Y PVC  +D   Y+S CHAGC      +++G+K ++DC C+    +NL         G+CT  C   PL  V  F+++FFTFL+++P L A  R V + Q SFA+G Q I VR LG IP P  FG +ID++C LW +++C G+  SCL Y+N     Y+  MGL+ KV+G++F   A  +YK   ++S
Sbjct:   87 GWWAFAPPCLQVLNTPKGILFFLCAAAFLQGMTVNGFINTVITSLERRYDLHSYQSGLIASSYDIAACLCLTFVSYFGGSGHKPRWLGWGVLLMGTGSLVFALPHFTAGRYEVELDAGVRTCPANPGAVCADSTSGLS--RYQLVFMLGQFLHGVGATPLYTLGVTYLDENVKSSCSPVYIAIFYTAAILGPAAGYLIGGALLNIYTEMGRRTELTT--ESPLWVGAWWVGFLGSGAAAFFTAVPILGYPRQLPGSQRYAVMRAAEMHQLKDSSRGEASNPDFGKTIRDLPLSIWLLLKNPTFILLCLAGATEATLITGMSTFSPKFLESQFSLSASEAATLFGYLVVPAGGGGTFLGGFFVNKLR------LRGSAVIKFCLFCTVVSLLGILVFSLHCPSVPMAGVTASYGGSLLPEGHLNLTAPCNAACSCQPEHYSPVCG-SDGLMYFSLCHAGCPAATETNVDGQKVYRDCSCI---PQNLSSGFGHATAGKCTSTCQRKPLLLVFIFVVIFFTFLSSIPALTATLRCVRDPQRSFALGIQWIVVRILGGIPGPIAFGWVIDKACLLW-QDQC-GQQGSCLVYQNSAMSRYILIMGLLYKVLGVLFFAIACFLYKPLSESS 696
The following BLAST results are available for this feature:
BLAST of TCONS_00004931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SO4A13.920e-9933.55Solute carrier organic anion transporter family me... [more]
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