TCONS_00004927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004927
Unique NameTCONS_00004927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1853

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004927 ID=TCONS_00004927|Name=TCONS_00004927|organism=Clytia hemisphaerica|type=transcript|length=1853bp
gcaatattttcatgaCTAATAGAGCtcagaaatttcaattttccaaaTGA
AGATACGATAGTAGTATCAAGAAGTCGAACATCGCTGCCTCGGTtgggaa
tgacgtcatcagttgaATGCACTACCAAAAGTCGCTTGTTAGGACATCAA
GAGAATTTGTTTCTCTCGCTGAACCAATTGGTCGGACCACTTGCTGTATA
CGCTAACATCAATGTGATCGAGTCAAAGAATGAGATATTGGTTGATCGAG
TCAAGGCTGCGTTCGAAGAGTGTAGCAAACGGAACTTTTTGATGCGCGCA
TGCGTCAACGTTGATAGCGATGGCGTTGCATTGTTTACGCCCATCAACGA
AGAAAGATTGATGAGTGATTGGGCACATGTGGATGAGATCCTATTGGAGG
AGGACGAAGAATGGACTGAGTTGTTACCACGCGTCTTGGAAAAGAAAATC
GATTTCCAGAACGGCCCGTTATGGTATGTGAAATGGTTGCGCGTTGAAAA
CAACAACATCAACTCTACAACAGATGGTCGGAATCGGTTCACTTACATTA
TGATTTGGGTTTCTTCGCATATTATCATTGATGGGAAGTCTGGGTCCAAT
CTAATCTTCAATCAAATTATGCCATTATTGAATGACAAATCTCTTGACCA
ATCGAATCGCATTTATTTCGGCAAACCAATGGAAAAAGCCATTTATAATT
TTAGTGAGGATAAGATGGCGGTCAGTGAGCGATCGGTCCCTTTCTTGTTT
CGAACGGTCACTAATGGATTCGTATGGAAACAATCTCTTAATGATGGAAT
CGATAAAGTCTTCAAATCTTCCAAAGATGCCACTTTAGAGGAAGAATGCA
GATGGCCACTACAAAATTTTTATCAATCCTTTATCGTTGATGGTGAGACT
AACGTCAAAGTGGTTCAAATCGCAAAATCACGAAGCGTGAGCGTGCATAG
CGTGTTAATGGTGCTAGTCCATCACGCTTTAGATCAAGCACGGAAAAAGT
TTAACCTGTCACTTGGCTCTGATATCCTCCTTTACCCAATCGACGTCAGG
AAATTCCAGGTGGATTTATCCGACCCTCAACGCATGCCACTTGGAGACTA
TCATAAAATGGGTCAACATAAAATGCTAGCCATCAACTTGAATGACGAAA
ACGCTTTCTTCAAAATGGCGGAACAAGTCAAAATGGGAATACAAGAACAC
AACCAACCCATCCAAGAAAAATCCCTTTTCGATTGTTGTTTTCATTTACT
TCAAAAGAGAAATTTGACACTGGATACTTTTAACGCCCTTCCTCCACCCT
GTGTCTTTAGTAACCTTGGTAACAATGACGCAATCGTTCGTTTCCATAAC
aacaaaaatgacgtcatcctAAAGAAGCATTTTTTCACCTTACAAAATTG
TAGTGGTATTTTTGTAGCATTGAACGTTTATAACAAGGAGATGCATTGGG
CTCTCTCTTTTGGTAAATCGCTTCAAGACGGGGGAGCTGGTCAATTTATT
GCTGAAACATTAAAACAGAACATCTATGATTTCGTGGAAAATTTTGCTTA
GTGTCTCGAGTACCTGTTACCTAGGGAAATTAAAGACAATACTTTCAGCC
AGAATCTATTATTTGAACTTACTCAAATAAATTCTTGAATAATAATTAGT
TCATACTTCAGATGAGAATGTTTGAATCATTTATGTACCTTcaaatagtc
atttttcatacacatttttattttgaataatatttttCGACGAGGTCTTC
ATCAGGTTTACAAACGTTCAATTGAGATCAATGCAATGACCTCAACCTGA
TATGCGAGAGCATTGGTTTCAAGAACCTAGACGTCACATACTGACCATCG
TCT
Run BLAST on NCBI

transcript from alignment at sc0000049:634160..638013-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004927 ID=TCONS_00004927|Name=TCONS_00004927|organism=Clytia hemisphaerica|type=transcript|length=3854bp|location=Sequence derived from alignment at sc0000049:634160..638013- (Clytia hemisphaerica)
GCAATATTTTCATGACTAATAGAGCTCAGAAATTTCAATTTTCCAAATGA
AGATACGATAGTAGTATCAAGAAGTCGAACATCGCTGCCTCGGGTAAGTT
TCGGTCAAGTCGTTTTTTATTCTTTTATCATGTTTTTGAAATGATTTTTT
ACGTCTAAAGATTTTATTTGCGATTTAGGTAAATAGAAGAAGTTCTTGTC
CATTACGGACGTTACTGACTCTAGGTAGTTTGTTGCAGTCGATAATCCCT
TTTTAATCGGGCCTATCACTGCCGATGTAGAATCTGTATGGGAAAATAAT
GAAATGGTGGACCTCTGTACTAAGAAAGAATGAAGTTTTTAACATCAAAG
AAAACAATTCATTTCTTTCTTCTTCATTTTTCCTCAAGAATGAAAGCGCT
CTAAATGATCTTTTCAATGGTATAAAGTTTTTTAAGTGTAAAAAATTTGT
CGAAAATGGCAAGCAAAGTTAAGTTAGTGTACACCGTGCACCTAAAGTAA
AGCGAATACTGTAGGCTTTGAGAACATTTTTTTCGATTGCCGCCATTATC
GAATCATCAAATCATGGCTTGGCAGCAGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGCCGGGGGGGGGGGGG
TTCCAGCCATGCAAATGTAATTATCATTAAGTCTACAGATACAAAATCTG
ATGAAAAACCTTAATTCACTAACCAGAAACCAAAATAATCTCATTGAAAG
ATAAAAGGATTTCTTTTCCTACATTTCAAAGATAAAGCGAGAATATCATA
AATGATTTTTTTTTATGCAAGTGTCTGTCTATGAATCAGGTGAGTGAGAA
AGTGTGCTATAATTCAGAAATATTACTCGGTGCGCCAAAAAAAATTACAG
TTTTGTCAAGATTTTGTATGATTTAAGTTTTTTGTTGATTCTTCTTAAAC
CTTTATGTAAGCTCGCATTATCTTGCCAAACCTGTATATACTATTTTTTG
GCGAACCCGTTATATCTAAGCATTTGGGATTTTATGGACTTTAAAAGCTC
GTACAAGCCATCACTACAATATTTTAACCAATTCAAGGTATTTGTAGAGC
TCTATGATTGTGTTGCTATAATTAAATATTAGTAACCCACTGACACAACT
GTGCAATTAAATGCTTCCAAACAAGATTCGCATCAAGGAATCCCACCAAG
AAATTTAAATACACACAATTTCCTGACATGCAAATTACTCACATTTCATA
AGATTAAACCAAATCTTTTAATATCAAATTTGAACGAAATTATAAATTGT
TTCTTTAGACCTTTTGTAAGTACGTTTTAAATGTGCTTGATTTGTTTGTG
TTAGATTCTGTCTGAGAAACTTGGTTTTGNAGACCTTTTGTAAGTATGTT
TTAAATGTGCTTGATTTGTTTGTGTTAGATTCTGTCTGAGAAACTTGTTT
TTCAAACGACGCCACTTTCTTCAATTTCGTTCTTTTTCACTTAGTTGGGA
ATGACGTCATCAGTTGAATGCACTACCAAAAGTCGCTTGTTAGGACATCA
AGAGAATTTGTTTCTCTCGCTGAACCAATTGGTCGGACCACTTGCTGTAT
ACGCTAACATCAATGTGATCGAGTCAAAGAATGAGATATTGGTTGATCGA
GTCAAGGCTGCGTTCGAAGAGTGTAGCAAACGGAACTTTTTGATGCGCGC
ATGCGTCAACGTTGATAGCGATGGCGTTGCATTGTTTACGCCCATCAACG
AAGAAAGATTGATGAGTGATTGGGCACATGTGGATGAGATCCTATTGGAG
GAGGACGAAGAATGGACTGAGTTGTTACCACGCGTCTTGGAAAAGAAAAT
CGATTTCCAGAACGGCCCGTTATGGTATGTGAAATGGTTGCGCGTTGAAA
ACAACAACATCAACTCTACAACAGATGGTCGGAATCGGTTCACTTACATT
ATGATTTGGGTTTCTTCGCATATTATCATTGATGGGAAGTCTGGGTCCAA
TCTAATCTTCAATCAAATTATGCCATTATTGAATGACAAATCTCTTGACC
AATCGAATCGCATTTATTTCGGCAAACCAATGGAAAAAGCCATTTATAAT
TTTAGTGAGGATAAGATGGCGGTCAGTGAGCGATCGGTCCCTTTCTTGTT
TCGAACGGTCACTAATGGATTCGTATGGAAACAATCTCTTAATGATGGAA
TCGATAAAGTCTTCAAATCTTCCAAAGATGCCACTTTAGAGGAAGAATGC
AGATGGCCACTACAAAATTTTTATCAATCCTTTATCGTTGATGGTGAGAC
TAACGTCAAAGTGGTTCAAATCGCAAAATCACGAAGCGTGAGCGTGCATA
GCGTGTTAATGGTGCTAGTCCATCACGCTTTAGATCAAGCACGGAAAAAG
TTTAACCTGTCACTTGGCTCTGATATCCTCCTTTACCCAATCGACGTCAG
GAAATTCCAGGTGGATTTATCCGACCCTCAACGCATGCCACTTGGAGACT
ATCATAAAATGGGTCAACATAAAATGCTAGCCATCAACTTGAATGACGAA
AACGCTTTCTTCAAAATGGCGGAACAAGTCAAAATGGGAATACAAGAACA
CAACCAACCCATCCAAGAAAAATCCCTTTTCGATTGTTGTTTTCATTTAC
TTCAAAAGAGAAATTTGACACTGGATACTTTTAACGCCCTTCCTCCACCC
TGTGTCTTTAGTAACCTTGGTAACAATGACGCAATCGTTCGTTTCCATAA
CAACAAAAATGACGTCATCCTAAAGAAGCATTTTTTCACCTTACAAAATT
GTAGTGGTATTTTTGTAGCATTGAACGTTTATAACAAGGAGATGCATTGG
GCTCTCTCTTTTGGTAAATCGCTTCAAGACGGGGGAGCTGGTCAATTTAT
TGCTGAAACATTAAAACAGAACATCTATGATTTCGTGGAAAATTTTGCTT
AGTGTCTCGAGTACCTGTTACCTAGGGAAATTAAAGACAATACTTTCAGC
CAGAATCTATTATTTGAACTTACTCAAATAAATTCTTGAATAATAATTAG
TTCATACTTCAGATGAGAATGTTTGAATCATTTATGTACCTTCAAATAGT
CATTTTTCATACACATTTTTATTTTGAATAATATTTTTCGACGAGGTCTT
CATCAGGTTTACAAACGTTCAATTGAGATCAATGCAATGACCTCAACCTG
ATATGCGAGAGCATTGGTTTCAAGAACCTAGACGTCACATACTGACCATC
GTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002789XLOC_002789Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004927-exon-sc0000049-1575043694:637921..638013TCONS_00004927-exon-sc0000049-1575043694:637921..638013Clytia hemisphaericaexon
TCONS_00004927-exon-sc0000049-1575043694:634160..635919TCONS_00004927-exon-sc0000049-1575043694:634160..635919Clytia hemisphaericaexon
TCONS_00004927-exon-sc0000049-1510915933:637921..638013TCONS_00004927-exon-sc0000049-1510915933:637921..638013Clytia hemisphaericaexon
TCONS_00004927-exon-sc0000049-1510915933:634160..635919TCONS_00004927-exon-sc0000049-1510915933:634160..635919Clytia hemisphaericaexon
TCONS_00004927-exon-sc0000049-1491911889:637921..638013TCONS_00004927-exon-sc0000049-1491911889:637921..638013Clytia hemisphaericaexon
TCONS_00004927-exon-sc0000049-1491911889:634160..635919TCONS_00004927-exon-sc0000049-1491911889:634160..635919Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:634160..638013 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.42086	0.219907	0	3.85392	6.30222	105.179	126.973	20.8385	20.7985	32.0048	5.17873	1.6161	2.78723	0	0	0.72962	0.373945	1.53974	3.24367	0.939778	2.06276	1.11447	3.03964	5.56071	6.90657	9.9486	7.66439	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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