|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004926 ID=TCONS_00004926|Name=TCONS_00004926|organism=Clytia hemisphaerica|type=transcript|length=1780bp
AGTGTCTGTCTATGAATCAGTtgggaatgacgtcatcagttgaATGCACT
ACCAAAAGTCGCTTGTTAGGACATCAAGAGAATTTGTTTCTCTCGCTGAA
CCAATTGGTCGGACCACTTGCTGTATACGCTAACATCAATGTGATCGAGT
CAAAGAATGAGATATTGGTTGATCGAGTCAAGGCTGCGTTCGAAGAGTGT
AGCAAACGGAACTTTTTGATGCGCGCATGCGTCAACGTTGATAGCGATGG
CGTTGCATTGTTTACGCCCATCAACGAAGAAAGATTGATGAGTGATTGGG
CACATGTGGATGAGATCCTATTGGAGGAGGACGAAGAATGGACTGAGTTG
TTACCACGCGTCTTGGAAAAGAAAATCGATTTCCAGAACGGCCCGTTATG
GTATGTGAAATGGTTGCGCGTTGAAAACAACAACATCAACTCTACAACAG
ATGGTCGGAATCGGTTCACTTACATTATGATTTGGGTTTCTTCGCATATT
ATCATTGATGGGAAGTCTGGGTCCAATCTAATCTTCAATCAAATTATGCC
ATTATTGAATGACAAATCTCTTGACCAATCGAATCGCATTTATTTCGGCA
AACCAATGGAAAAAGCCATTTATAATTTTAGTGAGGATAAGATGGCGGTC
AGTGAGCGATCGGTCCCTTTCTTGTTTCGAACGGTCACTAATGGATTCGT
ATGGAAACAATCTCTTAATGATGGAATCGATAAAGTCTTCAAATCTTCCA
AAGATGCCACTTTAGAGGAAGAATGCAGATGGCCACTACAAAATTTTTAT
CAATCCTTTATCGTTGATGGTGAGACTAACGTCAAAGTGGTTCAAATCGC
AAAATCACGAAGCGTGAGCGTGCATAGCGTGTTAATGGTGCTAGTCCATC
ACGCTTTAGATCAAGCACGGAAAAAGTTTAACCTGTCACTTGGCTCTGAT
ATCCTCCTTTACCCAATCGACGTCAGGAAATTCCAGGTGGATTTATCCGA
CCCTCAACGCATGCCACTTGGAGACTATCATAAAATGGGTCAACATAAAA
TGCTAGCCATCAACTTGAATGACGAAAACGCTTTCTTCAAAATGGCGGAA
CAAGTCAAAATGGGAATACAAGAACACAACCAACCCATCCAAGAAAAATC
CCTTTTCGATTGTTGTTTTCATTTACTTCAAAAGAGAAATTTGACACTGG
ATACTTTTAACGCCCTTCCTCCACCCTGTGTCTTTAGTAACCTTGGTAAC
AATGACGCAATCGTTCGTTTCCATAACaacaaaaatgacgtcatcctAAA
GAAGCATTTTTTCACCTTACAAAATTGTAGTGGTATTTTTGTAGCATTGA
ACGTTTATAACAAGGAGATGCATTGGGCTCTCTCTTTTGGTAAATCGCTT
CAAGACGGGGGAGCTGGTCAATTTATTGCTGAAACATTAAAACAGAACAT
CTATGATTTCGTGGAAAATTTTGCTTAGTGTCTCGAGTACCTGTTACCTA
GGGAAATTAAAGACAATACTTTCAGCCAGAATCTATTATTTGAACTTACT
CAAATAAATTCTTGAATAATAATTAGTTCATACTTCAGATGAGAATGTTT
GAATCATTTATGTACCTTcaaatagtcatttttcatacacatttttattt
tgaataatatttttCGACGAGGTCTTCATCAGGTTTACAAACGTTCAATT
GAGATCAATGCAATGACCTCAACCTGATATGCGAGAGCATTGGTTTCAAG
AACCTAGACGTCACATACTGACCATCGTCT Run BLAST on NCBI transcript from alignment at sc0000049:634160..636594- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004926 ID=TCONS_00004926|Name=TCONS_00004926|organism=Clytia hemisphaerica|type=transcript|length=2435bp|location=Sequence derived from alignment at sc0000049:634160..636594- (Clytia hemisphaerica)
AGTGTCTGTCTATGAATCAGGTGAGTGAGAAAGTGTGCTATAATTCAGAA
ATATTACTCGGTGCGCCAAAAAAAATTACAGTTTTGTCAAGATTTTGTAT
GATTTAAGTTTTTTGTTGATTCTTCTTAAACCTTTATGTAAGCTCGCATT
ATCTTGCCAAACCTGTATATACTATTTTTTGGCGAACCCGTTATATCTAA
GCATTTGGGATTTTATGGACTTTAAAAGCTCGTACAAGCCATCACTACAA
TATTTTAACCAATTCAAGGTATTTGTAGAGCTCTATGATTGTGTTGCTAT
AATTAAATATTAGTAACCCACTGACACAACTGTGCAATTAAATGCTTCCA
AACAAGATTCGCATCAAGGAATCCCACCAAGAAATTTAAATACACACAAT
TTCCTGACATGCAAATTACTCACATTTCATAAGATTAAACCAAATCTTTT
AATATCAAATTTGAACGAAATTATAAATTGTTTCTTTAGACCTTTTGTAA
GTACGTTTTAAATGTGCTTGATTTGTTTGTGTTAGATTCTGTCTGAGAAA
CTTGGTTTTGNAGACCTTTTGTAAGTATGTTTTAAATGTGCTTGATTTGT
TTGTGTTAGATTCTGTCTGAGAAACTTGTTTTTCAAACGACGCCACTTTC
TTCAATTTCGTTCTTTTTCACTTAGTTGGGAATGACGTCATCAGTTGAAT
GCACTACCAAAAGTCGCTTGTTAGGACATCAAGAGAATTTGTTTCTCTCG
CTGAACCAATTGGTCGGACCACTTGCTGTATACGCTAACATCAATGTGAT
CGAGTCAAAGAATGAGATATTGGTTGATCGAGTCAAGGCTGCGTTCGAAG
AGTGTAGCAAACGGAACTTTTTGATGCGCGCATGCGTCAACGTTGATAGC
GATGGCGTTGCATTGTTTACGCCCATCAACGAAGAAAGATTGATGAGTGA
TTGGGCACATGTGGATGAGATCCTATTGGAGGAGGACGAAGAATGGACTG
AGTTGTTACCACGCGTCTTGGAAAAGAAAATCGATTTCCAGAACGGCCCG
TTATGGTATGTGAAATGGTTGCGCGTTGAAAACAACAACATCAACTCTAC
AACAGATGGTCGGAATCGGTTCACTTACATTATGATTTGGGTTTCTTCGC
ATATTATCATTGATGGGAAGTCTGGGTCCAATCTAATCTTCAATCAAATT
ATGCCATTATTGAATGACAAATCTCTTGACCAATCGAATCGCATTTATTT
CGGCAAACCAATGGAAAAAGCCATTTATAATTTTAGTGAGGATAAGATGG
CGGTCAGTGAGCGATCGGTCCCTTTCTTGTTTCGAACGGTCACTAATGGA
TTCGTATGGAAACAATCTCTTAATGATGGAATCGATAAAGTCTTCAAATC
TTCCAAAGATGCCACTTTAGAGGAAGAATGCAGATGGCCACTACAAAATT
TTTATCAATCCTTTATCGTTGATGGTGAGACTAACGTCAAAGTGGTTCAA
ATCGCAAAATCACGAAGCGTGAGCGTGCATAGCGTGTTAATGGTGCTAGT
CCATCACGCTTTAGATCAAGCACGGAAAAAGTTTAACCTGTCACTTGGCT
CTGATATCCTCCTTTACCCAATCGACGTCAGGAAATTCCAGGTGGATTTA
TCCGACCCTCAACGCATGCCACTTGGAGACTATCATAAAATGGGTCAACA
TAAAATGCTAGCCATCAACTTGAATGACGAAAACGCTTTCTTCAAAATGG
CGGAACAAGTCAAAATGGGAATACAAGAACACAACCAACCCATCCAAGAA
AAATCCCTTTTCGATTGTTGTTTTCATTTACTTCAAAAGAGAAATTTGAC
ACTGGATACTTTTAACGCCCTTCCTCCACCCTGTGTCTTTAGTAACCTTG
GTAACAATGACGCAATCGTTCGTTTCCATAACAACAAAAATGACGTCATC
CTAAAGAAGCATTTTTTCACCTTACAAAATTGTAGTGGTATTTTTGTAGC
ATTGAACGTTTATAACAAGGAGATGCATTGGGCTCTCTCTTTTGGTAAAT
CGCTTCAAGACGGGGGAGCTGGTCAATTTATTGCTGAAACATTAAAACAG
AACATCTATGATTTCGTGGAAAATTTTGCTTAGTGTCTCGAGTACCTGTT
ACCTAGGGAAATTAAAGACAATACTTTCAGCCAGAATCTATTATTTGAAC
TTACTCAAATAAATTCTTGAATAATAATTAGTTCATACTTCAGATGAGAA
TGTTTGAATCATTTATGTACCTTCAAATAGTCATTTTTCATACACATTTT
TATTTTGAATAATATTTTTCGACGAGGTCTTCATCAGGTTTACAAACGTT
CAATTGAGATCAATGCAATGACCTCAACCTGATATGCGAGAGCATTGGTT
TCAAGAACCTAGACGTCACATACTGACCATCGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004926-exon-sc0000049-1575043694:636575..636594 | TCONS_00004926-exon-sc0000049-1575043694:636575..636594 | Clytia hemisphaerica | exon |
| TCONS_00004926-exon-sc0000049-1575043694:634160..635919 | TCONS_00004926-exon-sc0000049-1575043694:634160..635919 | Clytia hemisphaerica | exon |
| TCONS_00004926-exon-sc0000049-1510915933:636575..636594 | TCONS_00004926-exon-sc0000049-1510915933:636575..636594 | Clytia hemisphaerica | exon |
| TCONS_00004926-exon-sc0000049-1510915933:634160..635919 | TCONS_00004926-exon-sc0000049-1510915933:634160..635919 | Clytia hemisphaerica | exon |
| TCONS_00004926-exon-sc0000049-1491911889:636575..636594 | TCONS_00004926-exon-sc0000049-1491911889:636575..636594 | Clytia hemisphaerica | exon |
| TCONS_00004926-exon-sc0000049-1491911889:634160..635919 | TCONS_00004926-exon-sc0000049-1491911889:634160..635919 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:634160..636594 - |
Blast
The following BLAST results are available for this feature:
|
