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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004925 ID=TCONS_00004925|Name=TCONS_00004925|organism=Clytia hemisphaerica|type=transcript|length=1883bp
ggcgtttaaaagaagtaaTATAGTTATATAGATTGTTTTTCCTTATTTAC
AGGTATAAATAACAAACAAATGTAAAAATGACAACAGACACAAGTAATAA
CGAGTACTTGGACCTTGATGATCTTATTGATGAACTTGATGCACGAAAAC
AATTGAAGGCAAACTCTGATGAAGATGTCACCTACAACAGCTTGTTGCAA
ACCATAACACAAATTGGCAAAATGGCtgataaaaatgataaactTTTTCC
AAACAAAAACCAATCACAAGACCTTACTGCTGATCTCTTTGCAAATATGT
CAGACAGTGAGATGATCAGTCATTTTTTGCCCATGAGAGGAATTGATTTT
GATCAAGGAGTTTCAGATGaaatttctttagaaaaagaagagaagaaaaa
aaatgaagaaatcaaaCAGGCTTTCTATGCTGACGAGTTTATGCCTCATA
GAATGATGCCCCAATTAAATCCACTCTATCATTTGTCAGCTTTCAAATCT
ATCGTTTCCAATGCGAAATCAGGTAATAACAAGAGAAGTAAGAACGAAGT
GTCCACAATTGACTTTGAAGCAAAAAAGCCTGTATCTCAGGTTGTAATTA
AGGAGCCTGTTCCACCACAAATTGAATCTGaggaagatgaagatgaagag
tCTGGTTTGGAAGACGATGAGCCACAAGCAAAGCGATCTGCCACACGCgt
aatcaaaaaaagaaagccACGTACCTACAAGTATAACCCAAAGCCATTGC
AACACAAAGTGTGCCGATCATTCGTCCCAGATGATTTGAAGGATGGTGAA
TACTGGGCTCGTCGAAAGAGAAATAATGAAGCTGCTAAAAAATCCCGAGA
GGAGCGCCGTAAGAAGGAGCTAGAAATTCTCAACAGCTATGAGCTCATGA
AACAAGAATATTCTCAAATCAAGATTGAAAATATCCGACTTAAGGCGCGA
AATTCTGTACTTGAGAAGCAAGTTACCGAGCTAAAGTGCAAATTGAAGTA
AGCTGATTTTAACAACATTACAAAACAAGAGCGATAAAGTTGTTATTTTG
CTAAAAGTATACTTTATTGGAAGCTTAAGCGTTTCATAAAAGCTTATAAT
TGAGAGAAATATGATTTGAGAAAACATTTGGAAGACGTGCTTCACGTTCG
AATGAATGCAGTGTCATGGGAATGAACCTTTTGTACATAAAAATTATGGT
ATTAAAAGTTTTGATGGAAACtgttttttatgtttgactTATATAAGAGT
ATGATTAAATTATGGCATGTGATTTTGTGTGATTCATTTACTTTTTACGG
TGAAGCATACCTCGATTGATTATCTAATTAATGCTTGAGGGGTGTAATAT
TTTGCTTTTACCTGTGAGCTTCTATGGACCAATCTTGTTtattaaaataa
ttctaaatgACTCAGAATGACTGAAATATGTGTTGCCTAAAAccaaaaag
ttgtatttttggGAGAGCAAAGCTTGGCATCCAAAATGAAAGAACTGAAT
TTTACATTcggtttgatttttatttttatagctTGATTCATGGAAATGTT
TTAGTTTTCCGTTTCTTCTTTGACTGTTTTCTTTTCGCAAGAAGGTAAGA
CAGTAAGTAGGAAGCTTCTCAAGAAAGAGAAACCAcacaaaaacgaaaaa
atattatttttccccattttcttgCACTTGTaacataatgttttttttca
ttttaggacTGTATTCCTTTAAGAGGATCACCATTTATTATTCATGATTT
TGACGTGTTTTAGTATAATTTATGTTTATGAATAGGttgctttctttttt
taaaataaatcctGAAAAAGTACTACACAGTTTTCTTCTTCAAACGCAAA
TATTATAAACCTTCTTAGGTGTAAAAAGAGGAA Run BLAST on NCBI protein sequence of TCONS_00004925-protein >TCONS_00004925-protein ID=TCONS_00004925-protein|Name=TCONS_00004925-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
MTTDTSNNEYLDLDDLIDELDARKQLKANSDEDVTYNSLLQTITQIGKMA
DKNDKLFPNKNQSQDLTADLFANMSDSEMISHFLPMRGIDFDQGVSDEIS
LEKEEKKKNEEIKQAFYADEFMPHRMMPQLNPLYHLSAFKSIVSNAKSGN
NKRSKNEVSTIDFEAKKPVSQVVIKEPVPPQIESEEDEDEESGLEDDEPQ
AKRSATRVIKKRKPRTYKYNPKPLQHKVCRSFVPDDLKDGEYWARRKRNN
EAAKKSREERRKKELEILNSYELMKQEYSQIKIENIRLKARNSVLEKQVT
ELKCKLK Run BLAST on NCBI transcript from alignment at sc0000049:615562..617522- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004925 ID=TCONS_00004925|Name=TCONS_00004925|organism=Clytia hemisphaerica|type=transcript|length=1961bp|location=Sequence derived from alignment at sc0000049:615562..617522- (Clytia hemisphaerica)
GGCGTTTAAAAGAAGTAATATAGTTATATAGATTGTTTTTCCTTATTTAC
AGGTATAAATAACAAACAAATGTAAAAATGACAACAGACACAAGTAATAA
CGAGTACTTGGACCTTGATGATCTTATTGATGAACTTGATGCACGAAAAC
AATTGAAGGCAAACTCTGATGAAGATGTCACCTACAACAGCTTGTTGCAA
ACCATAACACAAATTGGCAAAATGGCTGATAAAAATGATAAACTTTTTCC
AAACAAAAACCAATCACAAGACCTTACTGCTGATCTCTTTGCAAATATGT
CAGACAGTGAGATGATCAGTCATTTTTTGCCCATGAGAGGAATTGATTTT
GATCAAGGTGTTTCAGATGAAATTTCTTTAGAAAAAGAAGAGAAGAAAAA
AAATGAAGAAATCAAACAGNTTGATTTTGATCAAGGAGTTTCAGATGAAA
TTTCTTTAGAAAAAGAAGAGAAGAAAAAAAATGAAGAAATCAAACAGGCT
TTCTATGCTGACGAGTTTATGCCTCATAGAATGATGCCCCAATTAAATCC
ACTCTATCATTTGTCAGCTTTCAAATCTATCGTTTCCAATGCGAAATCAG
GTAATAACAAGAGAAGTAAGAACGAAGTGTCCACAATTGACTTTGAAGCA
AAAAAGCCTGTATCTCAGGTTGTAATTAAGGAGCCTGTTCCACCACAAAT
TGAATCTGAGGAAGATGAAGATGAAGAGTCTGGTTTGGAAGACGATGAGC
CACAAGCAAAGCGATCTGCCACACGCGTAATCAAAAAAAGAAAGCCACGT
ACCTACAAGTATAACCCAAAGCCATTGCAACACAAAGTGTGCCGATCATT
CGTCCCAGATGATTTGAAGGATGGTGAATACTGGGCTCGTCGAAAGAGAA
ATAATGAAGCTGCTAAAAAATCCCGAGAGGAGCGCCGTAAGAAGGAGCTA
GAAATTCTCAACAGCTATGAGCTCATGAAACAAGAATATTCTCAAATCAA
GATTGAAAATATCCGACTTAAGGCGCGAAATTCTGTACTTGAGAAGCAAG
TTACCGAGCTAAAGTGCAAATTGAAGTAAGCTGATTTTAACAACATTACA
AAACAAGAGCGATAAAGTTGTTATTTTGCTAAAAGTATACTTTATTGGAA
GCTTAAGCGTTTCATAAAAGCTTATAATTGAGAGAAATATGATTTGAGAA
AACATTTGGAAGACGTGCTTCACGTTCGAATGAATGCAGTGTCATGGGAA
TGAACCTTTTGTACATAAAAATTATGGTATTAAAAGTTTTGATGGAAACT
GTTTTTTATGTTTGACTTATATAAGAGTATGATTAAATTATGGCATGTGA
TTTTGTGTGATTCATTTACTTTTTACGGTGAAGCATACCTCGATTGATTA
TCTAATTAATGCTTGAGGGGTGTAATATTTTGCTTTTACCTGTGAGCTTC
TATGGACCAATCTTGTTTATTAAAATAATTCTAAATGACTCAGAATGACT
GAAATATGTGTTGCCTAAAACCAAAAAGTTGTATTTTTGGGAGAGCAAAG
CTTGGCATCCAAAATGAAAGAACTGAATTTTACATTCGGTTTGATTTTTA
TTTTTATAGCTTGATTCATGGAAATGTTTTAGTTTTCCGTTTCTTCTTTG
ACTGTTTTCTTTTCGCAAGAAGGTAAGACAGTAAGTAGGAAGCTTCTCAA
GAAAGAGAAACCACACAAAAACGAAAAAATATTATTTTTCCCCATTTTCT
TGCACTTGTAACATAATGTTTTTTTTCATTTTAGGACTGTATTCCTTTAA
GAGGATCACCATTTATTATTCATGATTTTGACGTGTTTTAGTATAATTTA
TGTTTATGAATAGGTTGCTTTCTTTTTTTAAAATAAATCCTGAAAAAGTA
CTACACAGTTTTCTTCTTCAAACGCAAATATTATAAACCTTCTTAGGTGT
AAAAAGAGGAA Coding sequence (CDS) from alignment at sc0000049:615562..617522- >TCONS_00004925 ID=TCONS_00004925|Name=TCONS_00004925|organism=Clytia hemisphaerica|type=CDS|length=1848bp|location=Sequence derived from alignment at sc0000049:615562..617522- (Clytia hemisphaerica)
GAGTTTCAGATGAAATTTCTTTAGAAAAAGAAGAGAAGAAAAAAAATGAA
GAAATCAAACAGGCTTTCTATGCTGACGAGTTTATGCCTCATAGAATGAT
GCCCCAATTAAATCCACTCTATCATTTGTCAGCTTTCAAATCTATCGTTT
CCAATGCGAAATCAGGTAATAACAAGAGAAGTAAGAACGAAGTGTCCACA
ATTGACTTTGAAGCAAAAAAGCCTGTATCTCAGGTTGTAATTAAGGAGCC
TGTTCCACCACAAATTGAATCTGAGGAAGATGAAGATGAAGAGTCTGGTT
TGGAAGACGATGAGCCACAAGCAAAGCGATCTGCCACACGCGTAATCAAA
AAAAGAAAGCCACGTACCTACAAGTATAACCCAAAGCCATTGCAACACAA
AGTGTGCCGATCATTCGTCCCAGATGATTTGAAGGATGGTGAATACTGGG
CTCGTCGAAAGAGAAATAATGAAGCTGCTAAAAAATCCCGAGAGGAGCGC
CGTAAGAAGGAGCTAGAAATTCTCAACAGCTATGAGCTCATGAAACAAGA
ATATTCTCAAATCAAGATTGAAAATATCCGACTTAAGGCGCGAAATTCTG
TACTTGAGAAGCAAGTTACCGAGCTAAAGTGCAAATTGAAGTAAATGACA
ACAGACACAAGTAATAACGAGTACTTGGACCTTGATGATCTTATTGATGA
ACTTGATGCACGAAAACAATTGAAGGCAAACTCTGATGAAGATGTCACCT
ACAACAGCTTGTTGCAAACCATAACACAAATTGGCAAAATGGCTGATAAA
AATGATAAACTTTTTCCAAACAAAAACCAATCACAAGACCTTACTGCTGA
TCTCTTTGCAAATATGTCAGACAGTGAGATGATCAGTCATTTTTTGCCCA
TGAGAGGAATTGATTTTGATCAAGGAGTTTCAGATGAAATTTCTTTAGAA
AAAGAAGAGAAGAAAAAAAATGAAGAAATCAAACAGGCTTTCTATGCTGA
CGAGTTTATGCCTCATAGAATGATGCCCCAATTAAATCCACTCTATCATT
TGTCAGCTTTCAAATCTATCGTTTCCAATGCGAAATCAGGTAATAACAAG
AGAAGTAAGAACGAAGTGTCCACAATTGACTTTGAAGCAAAAAAGCCTGT
ATCTCAGGTTGTAATTAAGGAGCCTGTTCCACCACAAATTGAATCTGAGG
AAGATGAAGATGAAGAGTCTGGTTTGGAAGACGATGAGCCACAAGCAAAG
CGATCTGCCACACGCGTAATCAAAAAAAGAAAGCCACGTACCTACAAGTA
TAACCCAAAGCCATTGCAACACAAAGTGTGCCGATCATTCGTCCCAGATG
ATTTGAAGGATGGTGAATACTGGGCTCGTCGAAAGAGAAATAATGAAGCT
GCTAAAAAATCCCGAGAGGAGCGCCGTAAGAAGGAGCTAGAAATTCTCAA
CAGCTATGAGCTCATGAAACAAGAATATTCTCAAATCAAGATTGAAAATA
TCCGACTTAAGGCGCGAAATTCTGTACTTGAGAAGCAAGTTACCGAGCTA
AAGTGCAAATTGAAGTAAATGACAACAGACACAAGTAATAACGAGTACTT
GGACCTTGATGATCTTATTGATGAACTTGATGCACGAAAACAATTGAAGG
CAAACTCTGATGAAGATGTCACCTACAACAGCTTGTTGCAAACCATAACA
CAAATTGGCAAAATGGCTGATAAAAATGATAAACTTTTTCCAAACAAAAA
CCAATCACAAGACCTTACTGCTGATCTCTTTGCAAATATGTCAGACAGTG
AGATGATCAGTCATTTTTTGCCCATGAGAGGAATTGATTTTGATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004925-exon-sc0000049-1575043694:617166..617522 | TCONS_00004925-exon-sc0000049-1575043694:617166..617522 | Clytia hemisphaerica | exon |
| TCONS_00004925-exon-sc0000049-1575043694:615562..617087 | TCONS_00004925-exon-sc0000049-1575043694:615562..617087 | Clytia hemisphaerica | exon |
| TCONS_00004925-exon-sc0000049-1510915933:617166..617522 | TCONS_00004925-exon-sc0000049-1510915933:617166..617522 | Clytia hemisphaerica | exon |
| TCONS_00004925-exon-sc0000049-1510915933:615562..617087 | TCONS_00004925-exon-sc0000049-1510915933:615562..617087 | Clytia hemisphaerica | exon |
| TCONS_00004925-exon-sc0000049-1491911889:617166..617522 | TCONS_00004925-exon-sc0000049-1491911889:617166..617522 | Clytia hemisphaerica | exon |
| TCONS_00004925-exon-sc0000049-1491911889:615562..617087 | TCONS_00004925-exon-sc0000049-1491911889:615562..617087 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:615562..617522 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004827 | bZIP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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