TCONS_00004922 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004922
Unique Name	TCONS_00004922
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2684

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000049:596728..613409-

transcript sequence

>TCONS_00004922 ID=TCONS_00004922|Name=TCONS_00004922|organism=Clytia hemisphaerica|type=transcript|length=2684bp
GCGTGGgccaaaaatctcaaaccatctgatttaAATCACCATAATGTGAA
GCAAACTTATTTTCAAGTACTTCTATGTTTTCATTAGATATCGAAAAACT
ATTTACAGCTCTAAATGTAagtcaattttcatattttaaatAAACTTCGT
GTTTCTCATCATCGTGAAATGGTAAATTCTTAgttcaaattattttgatt
tattttgttcAACGTTTCTCGAAACTTGTTAAATCACTGCTCCGTCATTA
TCATTCGAATCCACCTTCATATTATCTGTTCGCTCATTCGATTCTGACTG
ATTTTCTTCGTTTAGTTGTTGTGACTGTCCACTACCACCATTTGATGTTT
CCACACTCCTTTCTTGCTGTTGTTGGTCCAAATATCGTAAAACGTTCCCC
GATTGCTGTTCATTGTTGTTCAGCATGGAGACCAACTTATTGATAGATCG
ATCATCGTTGGCAGGGATGCTCCTGATGGCACCACGTATTTCATCATCGT
CTCTTTCTCTATCTACTGCTCCATTTTGCGCCGTTTCGACTGGACTGGCA
TTAACAACCTCTTGGTACCGTGTACCTTTATCAGATTCTTGTCGTTGTAC
TGGAACATTCTGGTGGTTGTCAGGGAAACAGACCGCTGGCTTGATGACGT
TGTTTTCCATCATTTCATGTGGTTGAGACACTGGTGGTTCATGCTGTTCG
TCTTCATCAATGTTTATGTTGATGAGATTGCCATGGCTACCTTCTCCTCT
GCTATTGACTTCACTTCTTGATGAAGAAGGTGAGCGGCATCAACGACACT
GACTTGTATGGACGTTTGAGGTGGTGCAACATAAGGAACACCGATCCCGT
TTCGTTGGTGGCTTTCCAATGGCTCTATGGAAGACGAAAAAGAAAACAGA
GTCACTCATCATTTGAGATCGCATGTAGCATCAGAAAGTTGGTCAGCTTT
TTGGAGtttagaACACATTTGATTTCTCAATATGCCATTGGAAAAGAAGA
TCAAAACTCACTTGAGCATCGTGGTCATTGGACATGTCGATTCTGGAAAA
TCTACATCCACTGGTCATCTCATCTATAAATGTGGAGGAATCGATAAAAG
AGCTATCGAAAAGTTCGAAAAAGAAGCTCAAGAAATGGGTAAAGGATCTT
TCAAATATGCTTGGGTTTTGGATAAATTGAAAGCAGAAAGAGAACGTGGT
ATCACCATCGATATTGCcctctggaaatttttctccaaCAAATATGAAAT
TACTATCATTGACGCTCCTGGACATCGAGATTTCATCAAGAATATGATCA
CTGGTACATCACAAGCCGACTGTGCGGTTCTTATCGTGGCTTCGTCTACC
GGTGAATTTGAAGCTGGTATTTCTAAGAATGGACAAACCCGAGAACATGC
CCTACTCGCCTACACTCTTGGCGTGAAGCAGTTGATTGTGGGCGTGAACA
AGATCGACAACACTGAACCGCCCTACAGTGAAACAAGATTCAAAGAAATC
TCCAAAGAGATCGGTACCTACGTCAAGAAGGTCGGTTACAACCCCAAAGC
CGTTGCCATAGTTCCCATTTCTGGTTGGCATGGAGACAACATGATCGAAT
CCTCGACAAATATGTCTTGGTATAAAGGTTGGACAACTGAAGGAACAACA
GAAGAGAAGAAACCATTTAAAGAAAGTGGCAAAACTTTATTGGAAGCTTT
GGACGCCATTCAACCACCCAAACGCCCTGTTTCCAAACCACTCCGTCTAC
CATTACAAGATGTTTACAAAATCGGAGGTATTGGCACCGTTCCCGTCGGT
CGCGTTGAAACTGGCGTCATGAAGCCAGGAATGGTGGTGACTTTTGCACC
TGCAGGCTTATCAACAGAAGTGAAATCGGTAGAAATGCATCACGAGTCGC
TCACTGAAGCTGTCCCTGGTGATAATGTGGGTTTCAAcgtgaaaaatgtt
tcagtaaAAGAAATCAAACGGGGTATGGTTGCTTCTGACAGCAAAAATGA
TCCAGCTAAGGGCGTCGAAAACTTCACTGCTCAAGTGATCATTTTGAACC
ATCCAGGAGAAATTCACGCAGGATACCAACCTGTTCTTGATTGTCATACG
GCTCACGTCGCTTGCAAATTTGCCGTTCTCCAACAGAAAATCGATCGTCG
TTCAGGAAAAGTTTTGGAAGAAAATCCAAAGATGGTGAAATCAGGTGATG
CAGCCATGATCGAGTTAGTTCCTTCGAAACCCATGGTCGTCGAATCTTTC
AGTGACTATGCACCCCTGGGTAGATTTGCCGTTCGTGACATGCGACAAAC
GGTGGCTGTCGGAGTTATCAAAGCCGTCATGAAGAAGGAGAAAGCCGACG
GAAAATCCACCAAATCTGCCACGAAAGCCAGCAAAAAGAAATGATGTTTA
TTTTCCAACAAACTACTTCATGTTGTTGTTGCATTCAATCAAAATGTTTA
TCGAACAATCAAATTTCATAGAAAACATTTTCGTAGGATATcagtgaatt
tttgaaaaaagaacgaTTTTACGcttgttttattatttcaaatttcaaat
tttgagtgAATTTCCTGACTATTTACAGTGAATTCGTTGTCGAACTTTGT
ACTTTTCGTGGAATAGGCATTTTCTTAAATTGTACagtacagaaaaaaaa
acagttttggCATAACCCATCAAGTCGATCAAGA

Run BLAST on NCBI

transcript from alignment at sc0000049:596728..613409-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004922 ID=TCONS_00004922|Name=TCONS_00004922|organism=Clytia hemisphaerica|type=transcript|length=16682bp|location=Sequence derived from alignment at sc0000049:596728..613409- (Clytia hemisphaerica)
GCGTGGGCCAAAAATCTCAAACCATCTGATTTAAATCACCATAATGTGAA
GCAAACTTATTTTCAAGTACTTCTATGTTTTCATTAGATATCGAAAAACT
ATTTACAGCTCTAAATGTAAGTCAATTTTCATATTTTAAATAAACTTCGT
GTTTCTCATCATCGTGAAATGGTAAATTCTTAGTTCAAATTATTTTGATT
TATTTTGTTCAACGTTTCTCGAAACTTGTTAAATCACTGCTCCGTCATTA
TCATTCGAATCCACCTTCATATTATCTGTTCGCTCATTCGATTCTGACTG
ATTTTCTTCGTTTAGTTGTTGTGACTGTCCACTACCACCATTTGATGTTT
CCACACTCCTTTCTTGCTGTTGTTGGTCCAAATATCGTAAAACGTTCCCC
GATTGCTGTTCATTGTTGTTCAGCATGGAGACCAACTTATTGATAGATCG
ATCATCGTTGGCAGGGATGCTCCTGATGGCACCACGTATTTCATCATCGT
CTCTTTCTCTATCTACTGCTCCATTTTGCGCCGTTTCGACTGGACTGGCA
TTAACAACCTCTTGGTACCGTGTACCTTTATCAGATTCTTGTCGTTGTAC
TGGAACATTCTGGTGGTTGTCAGGGAAACAGACCGCTGGCTTGATGACGT
TGTTTTCCATCATTTCATGTGGTTGAGACACTGGTGGTTCATGCTGTTCG
TCTTCATCAATGTTTATGTTGATGAGATTGCCATGGCTACCTTCTCCTCT
GCTATTGACTTCACTTCTTGATGAAGAAGGTACGCTTTTTTCCTATTGAT
GAAAAGTTTTTGATATTTTATATACACGCTGTACGAGGGCATAGCCGAAA
ATTCTTGTTGGCAATACCCAATTCTTAGACAAAATATCACATTTCAGAAG
CAAATAAAACTAATCAAGGTTTAAGCCAAAATTTTTTATGGCGTTCGTAT
TTATTGAGTAATTCAAATTCTATGAAAGTATAGGGCTACTTTTCAAGCCA
GCCAAAGGGCGACATTATGGATTCGTAGAAATATTTTTGAAACACATGTT
GAAAATCTCCAAGGAACCTTTTGAAGAGTTTTAACACAGAAGATTTCAAG
TAAGTGGGTTCAAAAAGTTCATTAACAAATTCGTGCAAGTTGAATAGAAC
AAATAAGCCCTTTCTTCTTTGCTAATGACAGTTGATCTACCTGATATCGT
CATTTACTTCAAAATTGACATATATCTGGAATAGTATTTTATGTTGACAT
AGGTCATGTTAAGGTCATTTGTCTTCTTCTCTTATCTTAATTGATAACAG
AGGACTTGCTATTGTCCCTTTCATATTTGTCATACGCCCTCTTAATAGTC
AAAACAGTGTCCTCAAATCTTGCTCTGTCAAAAAGATTAAAGTTGCAAAT
TACGAAACTAGTCACGTTTTAGACCCAAAAGGAGTCAAAATTTACCACGT
AATTATTTTTTCTGTTAAACTTATCGAAAAAATTTTGAAACGATTTGAAA
TCTTTGACCTCGCTACTTTATTTATTTTATTTGTCACAGATCCGCTGGGA
CCCCAGCCCCACTGAAAGATTTGGCAAAAATCCCTTCCCCGTTGGGAAAA
TACTCTGGAATTTCAGCCCCATTGGAAATTGACTTTGATTTCATCCCCAT
TTGAATTCAATGTTTAAAACTTGTTCTCCAAAACCATCCCCACTGGATGT
TTTAAACCTTGAAACAATAGAATTTCAATGTCCATTGGGATTTCAATTTC
TTATCCCGAAAAAGTTCCACCGAGGCTGTGAAACAGTAGTCTGAATCCCA
GACCTCTATAGATAAACCTACATAAAAAACTCTTTTCGCTAGAGAACGAG
CAGAAGCAAAGTGAGACTGGGGTGTTTAAAGGGTCACAGTCTAGGTACCC
CCCCCCCCCCCCCCTCCATCAATTCTAAAGGGGCATATATCCATTTTTAT
GAAATTGAGTTTTTTTTTGCAAGTTTAATCGCGCCTTTGTCCATCTTCAT
GATATTTTTTTCTATCTATTCTGAATCTAACAGTCATTTACTTCATTTTG
ATACGTCATGTTTTACTAGGTTTTGTGATTGTAGCAGTATAAATTAACCC
TTCTCACAAAGCTTAGATTAATTTCAAAGAGCCCTCAACTCATCTAAGCT
GCACGCAATCCTTTCTGATATCTTTTGGTATAGGGGATGGTAATCGTTGA
TAAAATTCCCGTCCGAGATGGCTTGAAACAAACTCAATAAGCTTAAAAAT
GTAACGAAAGCATGCAAAAAAGAATATCGTTACAAGTTTTATAAGATGTT
GCAAATAGATTTTCATTAGCCGCATTGACAGAACATTAAAAAATATGAGA
ATTCGATCTGAGAAACAATCCCTCAGATAAAAATAGTTTTAAAATAGTGC
ATGTAAGAATTATTTTGGCTTCATAGCTCATCTAGATTAGAACTTATGAG
TTTATTAGAGCCCCCCCCCAGCGGTTTGCGTGATGGCGTGATTGGGACTT
TTTTTCTTGCGTGATGGCGTGATTAGAGTTTTTTTTTGGCGTGGTGGCGT
GATCAAGATTTTGGCGTGATGCGTGATAGGGCAAAAATTTGAGGCGTGAT
GCGTGATTTGGGCTATTTTTCGCTATTTTTTGCGTGATGACAAATTTTAG
CGATTTTCGTGATGCGTGATGGAGAAAATTTTTTTTGCGTGGTGGCGTGA
TTAGGGCCGCTGGGGGGCCTCTTATTACGAAACATGAAATAAAACTTAGC
GAAAAACTTGTTAGAGGGGTAAAAGAATAAAAGTAATAGTAGGGGGAAAT
TTGTTCGTTTTTTTTAGGTCGCTCGACTTTTTTAGTCAAAGCACTTGTTA
TACATTTTTGGAAAGCTAAGAGGTAGGGGAATCAAAATAACTTGGGTGCC
AATTTTTTTTCGGACACTTTGGTGTGATTTTCGGACAAATACGACGGTCT
CAGGCAAAAATCATAGGGTAAAAAATTAATGAAAATTTTAGCTTGAGAAA
ACGGAGACCTGTTGTATATTTTTGGAAAGGTCTCAAAAAATTAAGATTAG
TGATATATTGCGAGTATAGGTGATTTCTATACCTAACTCGAGATATTGAT
CCTTAAAAACAGTGTTTTTCAGTGTTTTTCAGCCAGAAACAGCTGTTTTG
TTCAGTTTTTGCGCTTTCGGAAGCTCAATATCTCGAGTTAGGTACTGAAA
TCACCTATACTCGCGATATATCACTAATCTTGATTTTTTGAGAGCTTTGC
AAAAATATACAACAGGTCTCCGTTTTCTCAAGCTAAAATTTTCATTAATT
TTTCACCCTATGATTTTTGCCTGAGACCGTCGTATTTGTCCGAAAATCAC
ACCAAAGTGTCCGAAAGAAAATTGGCACCCAAGTTTTTTTGATTCCCCTA
ACCCTTAGCTTTCCAAAAATGTATAACAAGTGCTTTGACTAAAACAATCG
AGCGATTTTACAAATTTCCCCCTACTATAAGCTCTCTGTTGTACCAGAAA
AGAAGTAGAGCTGATTTTTTCGAATCATGCATTTATTTGTCAACAAGTAA
AAAAATATAATACTGGTCAGTTTTAGCCGAAGGACTTTGAATGTAAAATG
ATTCCTATTATCCCTGTTCCATTCTTATCAAAACTATCATTTTACATTGG
AAAATCCTTCGGTTGAAACTGACAGTAATACACCTTTCTGAAACTTTGAA
CCCCACTGATTTCAAAAGTGAATTCAGATCTCTATAATAGTTCCATTTAG
AGCATTTTTAAGCAATTTCTCACCCATTTGGACCTTTTCAGGAATATTGT
AACTTTTGACCAAAAAAAATATGATTTCTATATTTAGATTTAGATGACGG
ATGACGTTTGCGTTTCAAAAATATTTCGAAAAATTTTCTAATTCGAATAC
CAAAAAGATATGATGAATACCAATTATTAGTCAATATTTGGACCGTTCAA
AAGAATGAGAATTTGAACATCTTGATATTTATAAAAAAATTTTCGAATCA
TACTTTATTTTTCAACAAGTAAAGAAAAATGAATTAATAAAGTTTGTTCA
TTTTCAAATTTTAAGAAGATTTTTAAAATCTTAACAAGCCAGCTGATCAT
AATTATCTTTCCAACGAGGAAAGTTTAAAAATAACGAACTGCCATTTTTT
GGAGCAGTTTTTTTTGCTTCTGCAAGTTTGTTTCTCGAAGGAAAACATCT
TCCATAATTTTCATAACAATGTGCGTAGATTCCCTTTTTTTACCTGTTAA
GACCTTAAGACAGACAGACATGATTTCATTATTTACTTCTTCGGTCCTAA
TTTGCCCGTAGACCCCGAAGAGTTATTATACGCTGTGTTTCCCAAAATCG
TTAAGGATTGAAAAGTCTGTATATGTTTCATGTTTCTTTGTAAAGTTTTC
CTCAAGTGGTCGGTCTACTTTATTTCGAAACAATTTTCTCAGTTAAAACA
TTTTTCGGTCTTTAGAAGTTTCGAGAGAAAATCTAACTAGAGCCTTACCT
GATTTCTTTCAACTTCGTTGCCTCCTTCACACCTTGCGTTTGAACAAATT
CTTTGTAAAGCATCATCTGCTTTCAGGTGAGCGGCATCAACGACACTGAC
TTGTATGGACGTTTGAGGTGGTGCAACATAAGGAACACCGATCCCGTTTC
GTTGGTGGCTTTCCAATGGCTCTATGGAAGACGAAAAAGGTATTCTCTTT
CATGGATAGTCTCTACCCTCTTTTTTATAAGTAGAACTTCATAAGAAGTC
CCCCAGCGGTTTGCGTAAATGCATGAATGGGCTTTTTCACTTGCGTGAAT
ACGTGAAAATTAAAAAAAAAAATGCGTGAATGTGTGAATTGGAAAGCTGT
GAACAAAAAATGCGTGAATTGCGAAAAAACGCTGCGCGAATGCGTGAATT
TGGGGAAAATTGCGTGACAGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGGGGGGGGGGGGGGGTCTCTAAGAACCATAATGCTCAAATCGTC
AAGAAATAAGAACAGGGCGGAGCGTGGAATGGAATTTTAAGTTATGCAAG
GGTCAAAATAATAGGGAAATTGGATCAAAGCTCAATTTTGTCCTAAGAAT
TTAAACAGGATAAAAACAGTTTGAGTCTCAAGAAAAATTCACTTGTTCTC
ACTCACAGAAAAGAATGTATTAGAGGGCGTACGGGGTTTGCGATTTCCGC
AATACCGAATAATTTTGCCAAAATTTCCGAAATTCCGTAAAAAATACTTG
TGATTCCGATACCGATTTTTTGGGTATTTTTCGTCTTTTTGACTAATTTT
TCATCAAATTTGATTTTTCATGTATGAATTCCGAAAAAGGGGGATAAAAA
CTACCGAAATTTCGAAGCAAAAATTCATGGTTTCGTGATTTCCGATACCG
ATACAATTTCAAAATTCCGAATTACCGAAGAAGTTCTGCCCGATTTCCGA
AATTCCGAAAAAAAGGGTCGGTTTTCGCAATTTCGAAATACCGTACGCCT
CCCCCCCCCACGTATTACATACGAAAACCTTAACACGTATAACTTCGAAT
GCAATTACCGGCCCAACATCCACACAGTTTAGAAGTCATAGCGCAAAATC
TGCTGTTTTAGAAGACTGGGCCGAATTTTTGTCGAGGTTTAAGTGTTAAA
GTGTTAAATTTTCAATTTCGCAATGGATCGGTGGTGTTTACCACCCGTTT
GTTAAAAAGCCAAAAAGGAGAGATTTTACTCAAAAGGTGGAATCGGCATA
AGCTCTGCTTTTTCTGGCCACCTGTGTTCATTTTTCTGTATTTTCGTACT
CTTGAAAGGGAGAATTTTAGAGACTTTTGGTAAACCCTTGTGTACCTCGC
CACCACACACAAGTTTTTTACATAATTTCTTTCCTTGCAATAACAAATCT
CAATAAATCACGTGTATACAAGGTAAAGTGTATCCTGGAATGGACTTTGT
CACATGATTTGTCTGGTGATTGGTATATCGCTTATTGACTTATTAGACCG
TTAGACTATCTGCAATGAAGCAACAATAGTGGTGTAATGGGAAATTTAAA
AATACTCTAGTTATACAACTCTGAGTGATAAGTCCTAACTAGTCATTATC
GTACTTCTTTTTATAGGAATATACTATATAAGAATTTTATTGATAAAGTG
TCCAAAAATTAAGAACATGCTAAGAATATCACCATCATAGAATTTGTTAG
CTAGACATATAATACCTATAATTGCCAATTTTAGAGCATTTATTGACAAT
TACCCCCTAAAATGATTAAGAATACCATACCATATTTTTGCCTAAGGTAA
GTATTACATGTTTAAACTGATATACACGTTTTTTTATAAGAACAAACTAT
ATAAGAACATAAGGCTTCGAAGCCCAAAAACCTAAGAACATTCTAAGAAC
ATACTAAGGCTTTGGAGACTTAAAAACATGCAATTTCTTAAGAAATTACA
TCAAAATGCTCAAAAAATGCTGAAAATAAGAACATTCTAAGAACATACTA
AGGCTTTGGAGACTTAAAAACATGCAATTTCTTAAGAAATTACATCAAAA
TGCTCAAAAAATGCTGAAAATAAGAACATTTTAAGAACATTTTTAGGCAT
CAAATCCAAAAAACTAAGAACATTCAAAGGCTTCGAAAATTTTTGACGTT
CTTATAAAAAAAAAACGTGTATTGGGTTTGGATTCTAACCTGAGAATACT
ATAAGAATATTCTAAGATCATTTTCCCTAAGAAGCTAAGAATATACCATG
ATGAAGTTAAAAAGCACCATTCTTATAAAAAAAGTGTGTATTTTATTTTG
ATGGCCACCATGGCCTTTTCCTAATAAAGTATTCATTTTATAATCAATGT
TTATTCTAGTAGAAAAATGTGTCAACTCGAAAATAATCCCATGGTTTTCT
CTCATCAATCAAACTTCTCTCTTTTATACTTACGTAACCATACAGTTGAA
TCAGGCCATTGACATGTGTTATTGGGGAACATGCATGGTTAAACCATGAA
GGGTTTAACTTCAATAATCTGTCCGATTTACGAGCAAGATTGTAAAAATT
TTGAGAAATGAATTTTCATTAAATAATTCTTGTCATTTTCAAAGATACCA
GTGGCTAGCCTGCACCACTATAGTGTAGTACGATATATAAACTTGCGGAT
CACAAAGATAATTCCCTTTTTTATGTGTTTCTCAGTCTTCATGTGTTTTT
ACCGTCAAAAAACGTCCTATAGGTTACAAAATTAGTCCACAATCAGTGCC
ATAATATATTGGTATTTTTGGTTAATTTACCATTTTTCGAAAATTGAAGT
TCGAGCGACAATTTCAGGCCTTCGACTTGATTTCATCAATTATTTCGATA
TGTGAGGGATTTATTGGTTTCTAGGCTATATTTCAAGCCCTAAGGATTAT
TTTTCAGTCTTAAGTCTAGCGTTAAAACTCAGAGTTAAAACTCTACCCTT
CGAACCTACTTTAGAGCACTTACAAATCGATTGTGGTTTCAAAACACCGG
TGAATTTCCCTTTTGTGCCAAGTATTTTGTCACTGATTGCAGATAGTTTT
TCAATAAAGGATCAGAAGGTTGGCATTAGTTTCATTCTGCAGGGTCTGAA
CCATGAAAGTTGTGGACAGAACTTACAACAACCTCCTTCCGATCTGTTAT
TTAGGTCACCAAAATGAAATCATCTTTTAGAACATTGAAAATCTTAATCG
AAAAAAATATGCACTTATTGAAAACCACCTGATCTCTTGAAAGCTTTTCA
TTACTTCCAATTTACATTCCATTAATACTTTAAACTTCCAGAAGTCGTAA
TGCTTATCTAATCTTATGTCAGAAGAACCTGACAGTAATTGGTATTTGGG
TAGTATTCATTTGCTGGCAAGTCATATTGGATTGCTGAGATTGGACAATA
AACCCAAAAAATATCGGGTTAGCAGAAAGAAAAAGTTCTCCTCACCGTTG
TTCGTTTGAAACCATTGCTCTCCATACCGATCATCTGGGTCAACTCTCAC
CCACCTTGATCCACCATCACCACCACCCCCACCACCAAAGTATGGCTGCC
CTTGCTGTCCTGTGATGTAGGTCTTCTTGTGAAGTAGCTGCCCCTTTATC
CTCATTGCTCGCTTCTGTTGTTTGAGCACTGAATTGATTTTATTTTTCGA
TTCTGGGTTTTGTTTGATGTATTGCTTTTGGTGGACCAAATCATTGATTT
TGTTTTGGTTTTGTTTAGATGGTTCTGAATTTTGATCCATGCTTTTTCCT
GGGTTTCTTCTTGAGGAGGATTGTTTAATGTCGGTCTGATCTTGCTCACG
TCGGCTTTCTTGATCTGCACGCTGTTCAAGTTGAGATGGTGGCTGACTTT
TCTTCTGCTCCATTGGTTGTTTTTCATTTGGCTGCTGTTTTGCACCTAGG
TATGTTTGTTGACTTTTTTGTCCATTTTGTTTTTTTTGCGTGCGATCCTT
TGCAAATGTTTTGTTCTTCCATCTGACATGCTGGTTTTTCCTTTTGGTGG
CAGTGATTCCCGATGAACTTGAGTCTATTTTGATCTGCTTATGGAAATGT
TGTTTTGTTTGACGAATCATTCCGTGTCTAAATATTCAGAAAAATGTACA
AGTTGACGAATCAGTATCAGACCTATTCCGATAGAATTGCTTGTGTGTTT
ACTCTAAAAGTTTAGTCGTTTGATAAAACCTTTTGTTTTCTGCAAAGTCA
AAAAAGAAACAATCGGATCGATTTTAGAATTCAGCGGAGTTCTCTATTAC
TCGAAAACGCACAGAAAACGCAAATTTATTCGAGTTAAGGAAATTTCGAG
TCATAGAGTAAGTTTTATGAGGCATTGTTAACCGTAGGGGTCAACAATTT
GCTCGATTTAAGGAGACATTCGAGTTAAGGAGACTCCATTGTATTTATAT
GTCATAGATCAGCTTAATAGAGACATATATTGATTTGCACACACGAAAGA
AAATGAAAATAATCAGCTGATAGATTCTCCCTCACCTTTCAATTTTTGCA
GAAGAGAATCTCAATTTATGTTTAGCTTTCGATTTCCCTTTCTTCTGCTT
CTTCCCTCTCTTCGAATGCTGTTGTTTCGTGGCCAACCGTTCGGTGAAAC
GCCCGAATATGGGTAATTTGTCGACCGCTCTCCTTTTATGTTTTTCACCG
ATCGAGCGTCGTTTTCGAATCTTTCTTTCTCCTTTGTTGTGGAGGTTTCT
TTTGTTGATGTCTGGTTCATCTATTTGAAGTAGCTCCATTAATTCGTTGG
CTATGGTACCAATGGCTTCTTCGTAATCGTTTTGTAATGGTGGTGTTGAG
ATATCCGATTTCTTCATCTTTCTGGCTGCAACTTTATTGGTTTTGTTTTC
TTCTTTGGTCAAGTGTAACTTATGACGATCATCCCCTTCTGTGTTTTTAT
TGTTGCCATTCGCCATGCCAAGCATATGGAAATCTGGATTGGCATAAGGT
GATTGGGCACTCCTACCAATCTTATGGCGAACTTCTGCGTTGGCTTGTGA
GGAATTGTTGCCATTCATTTGATTTTGGTCATCTTGCTTTAATGAATTGT
TTGTTGGTGGAATCGATGTCCTGTTAATCATGTGTGGTGCTCGCCCTTGC
ACATTGAGAACTTCAAACCACTGCAAATTGTAACCAGTGTTCGTCAAGGT
GGTTGTATTTTTTGTTTGATTCTGATATCCCTTTGTATGATTGGATAGTG
TTGTGTTAGTCCCGTCATGCATTGCGTGCGGGGGTCGAACGCTGCTCCTC
ATTGTTGCATTATGAAGTGTTGGGAGACTAGCAAGGTTTTCTGAGATGAG
AAGTATTTGGTGTTTTGCCTTCAACTGAGGACTGTAAAACGTCTGTGGTG
TTTTACTTTGAGACTGGTTTCCCTTCATTGATAAGGGTGAAGGTTGACCC
GATGTTGATCGGCTTGGAGTCTGTTTGTTTGATTTTCTTTGTTCCGATTT
GTTCAGTCGATCTTTGAGTTTCAAAAGTTTTCTCCGGTTGGAAATATATT
TCCTCGTCTGAGGAGGCAAATTCTTGCCAGTGCTGAGAACAGGTGGCTGA
TTTTGTTTCCATAGGCGATCTGGGATCCACGAATTCTGTTCCAGATCGTC
CACTACTGGCGTGAATTCGGTGTGAATGTCATGGAGAGATATCGGTGATG
CAATCATCTCTTTGATTTGTGGCAAATTAAAATCTTCTTTCAACACCAAT
GTAGGATCCAAGATCTCTGGTAACTCTTGTCTTTTGATGGTCGCATAAGG
ATCGTTTTGTTGCTCGGTGGTATTTGCGTTCGTTATGTTCGGATCACTTC
TTTCATTATTATTTTGAATTGCTTGGTGTAAATCTGTTTCTGTTCCGTTG
TTTCCGTTTGTTCCGTTCTCTTGATTTCCACTTATTCCTGTTACATTTCT
TTCTGTGACTTTGTGTGCGTCCGTTCCAACTGTTCCGTTCGCATTGTTAT
CTTCGTGATTTTTGGTTCCATTGGTTGAATCATTGCGTTCACTAGTGTTA
GTGGTGTCATTTGTGCTGTTAGTTAATTCGTTAACCTCGTTCTGGTTTGA
AAGTGAGTCCATCTCTTCCTTTGTATCAGGACCATGACTTCGTTTTCCAT
CATCGTGCGTAGTGACAAAGAAGTCGTTCATCTCTACTTGATCGACCAGA
CTTTTCAATTTGATTTTTATTAAGCGCAAATCATGTTGCGATAGATTCTC
CAATGATCGCCTATGGACAAAATTGACGATGCGATGGATCACTTTCTGTA
TTTCCTTGAGGAGGTGATCTGTGTCAGCTCTGGTGAGATTGGTGTTAGTT
GAGCTAGTGGTGGAATTACCAGTACTGCTCCTCTTGGAAAGGTCATTTGT
TGGTTTGTTCACTTGGTCTTTCTTCCTCAGGTAAAGATAGACATGAGGCC
TTTTGCCAGAAAGGTCGCGAAATTGAAGACGAATTCTTAGATATTTGTGG
TTCTGCTTTACCACATCAATCTTGTCCTCTTTATGTTGTTGTTTCTTCTT
TGTAATCGTTTTGACATGATGGTATTGTTTGTTCATCGTTTTGACAGGAT
GGTATTGTTTGTTCTTCTGATGCTGGACTCTCACATTCTTGGAAGTTTTG
CTTTGATGAAGTCGTTGAGCTTTTCTCCATTGTTTTCTTGGTGCATTTCG
ATTGTTTTTCTGTACTGAAAGTATCGCATCCACTAACAAAAAGAAAAAAA
GCCAGTAAAGAAGTCTCATCTTTCGTCTTTCATTATATTGACGATCGAAA
ACAAATTTCTATAAGATATCTATGTTTCTATTTTTTTGCAACTTTTCTCG
CATTTTGTGACTAATGAAGCATTGCCGATCACAGCAAGGAGCAAGGAGAG
GTTTTTATTTATTCTCACTCCCACTGAGTTGGTTGTTTGTTCTTTATTCT
TATTATACGCAATATGTGTAGCTGAATTTCAATGAGCTGCTGCATTGACA
CTCTCTTCTATTTATCATCTAGCCTCTAAGGATAACTTAAAAAGGAGCAC
TCTGTATAAGCTTGAACTGCGACAACTGCTGGGACACCGTTTTCCTATTT
TTTTTTTGGCAAAAAAGGCGCTAACTAAAAAGGGGTATTGAATTTACATT
GCTCAGATGCTAAAAATGGTCAAAGATTTCATTTTTCAACTTTTAAGTCG
ATTTACTCGTTACTTGCACGACAATATCGTGAAAATTTTTTGATTTTGGA
ATCTACATATACAAATTCGCGAGTCTCCATAAAAAAAATCATATCTCAGA
CATGTATCACGAAAATCGTTTTCTAGCCACTTTTTTGACATCGTCAGCGC
TATTATATTATATATTTCCAATCGCAAAAGTCTTGTGTTACAATCTAATA
TCGCTTCATAAATGAAGATAAAAATTAAATAGTAAAAGTAAATTTCAAGG
TCAAATGAAAAAGGTATGAGAATTACTGACATTTTTTCATGTCATAGGTG
TTCATATAACCCTTGCTTCTGATAGGCCGGCTTCTTAACTAATTCTAGAT
TTCTAAGCCGGGGAGTTTCTAGCAAATCCAGTGAATATGTACTTCAGGCA
GCCAAACGAATCATTAGACCAGCGAATTTTAATTTTTTGATTTCTTTGCT
TGAACCTGCAAAATTCGCCGTTTGCCGGGCCTAAATAATAGCCCTGCTCA
TAGTGAATAAACTTCCCTATTCCACCTATTTTTTAACAAAGCACTAGTAG
CTTTAACAATGTACCTTGGACTACAAAACTTAGTTTTATTTTTAACCCGG
AATGTTCTCTCCTCTGTCATAAAAGAAAGTGGCGCAAAGGTAATAAATCC
AGCTTCGGTGTGCAAGATAGTGGGTTCAAGCCCCATCCGAGTTTTACCAA
TGACTTCGTACTTTGTAAGAAATGGTACTTGATGCTCAGCAATTAAGAAA
AGGATCAAGGTCAGATAAAGCTAACCAGAGCCATCCCCTTCATCCGACTA
GATAACTATCGAAAGAGTAGCCTGCGGGTCCTCTCTGACTCTTACAGACT
CACTCCCTTATAGGGTTGTATGTCGTGCTATTTTTAGATGGTGAATTCGT
TGAAAGCTTCATAAATTGTAATTTTAATGATTTTATGGATGTTATAGACG
ATTGAAAGTTTTTATATGTTCATGGACTGGCCGAGGCTGAAATCAAATTT
AGATTAAAATTTTATTCTACTCTACCAAAAGTCTTGAGTTTATGCTTTTA
TAAAGTTTTAACTTCGCTTATTTAAATGACGTGTTCGGATTTTTTGAGAA
TAATCCCAAGCTTAGACAGACCTCTGAAATTTATAGAAAGTGCTGATTTT
TTTCACTCTTAGCCCCATGTACGGCATGTAGGATCTCAATAACACAAAAA
TGGCACAAAAAACGTAGTGTACTTGTACTGATGGTCTTAGGGAATTTTTT
GAGTGAAAAACGTTAGAGAAAATTGATACAATAATTCTTAAAAAGCGAGT
TTAATAGGTTTATTTTCTCGAACGTCCGTAACACATCCTAAAACCCCTCC
ACAGATGGATAAAGAGTTGCTTTATTAATCTCTCTGTGTCATCTTAATTC
TCAAATGAGAAAGTGCGTATTTGTTCAATTCACACAAATCGATTTTTATA
ATTCCCAAGGGAAATAATCACAATCACTAAAAGAGGAATTTAATGATATC
GCTCCTCCGTTGTGTCTTTTCTTTCGGCGCTCCTCACAATACCATAATTT
TGCGTCTTGTTCCCACGAAGGAGGGTGACCATTTCACCATAACATATAAA
TTCAATGTTTCAGAAAACAGAGTCACTCATCATTTGAGATCGCATGTAGC
ATCAGAAAGTTGGTCAGCTTTTTGGAGGTGAACTTAACTTATTTTGTTGA
TTTTTTTTCTCAATATAAAGCATCGATAGGAGTAGCACTTGAAAACATAT
ACATCTTTGTTCGCATTGAACCTAAAATGTTGTTTATTACCTAAGATTTT
AATGGGTGGATTGTTTGAACCTTCCTTAATTCTTCTACAGTTTTTGATCA
TCAGCCAAACAATCATTTCATTCACCTTACCTTATCTTAAAACTTTTATT
TTTATTTCAGTTTAGAACACATTTGATTTCTCAATATGCCATTGGAAAAG
AAGATCAAAACTCACTTGAGCATCGTGGTCATTGGACATGTCGATTCTGG
AAAATCTACATCCACTGGTCATCTCATCTATAAATGTGGAGGAATCGATA
AAAGAGCTATCGAAAAGTTCGAAAAAGAAGCTCAAGAAATGGGTAAAGGA
TCTTTCAAATATGCTTGGGTTTTGGATAAATTGAAAGCAGAAAGAGAACG
TGGTATCACCATCGATATTGCCCTCTGGAAATTTTTCTCCAACAAATATG
AAATTACTATCATTGACGCTCCTGGACATCGAGATTTCATCAAGAATATG
ATCACTGGTACATCACAAGCCGACTGTGCGGTTCTTATCGTGGCTTCGTC
TACCGGTGAATTTGAAGCTGGTATTTCTAAGAATGGACAAACCCGAGAAC
ATGCCCTACTCGCCTACACTCTTGGTAAGGTTTTTTTGGGAATTTTATAA
AAAGAAATGTGTAATCTTAAACTTGATGAATAAAGTGATGAATAAATTCG
ATTTATATCCCCTTCTGAGGCAGCTCTCTTACTCAATCAACTATTTTTTA
AATGTAATAAACCAATTTCATCAGTTCCTTGTTATTTCTTGTGGGTAGTG
CGTTATTCACTTTTCTTACAAGCAAGTCTTGCAATTTCAAATCTCTGAAA
AGTATTGCGTTTATGCGTTCTATGTGTAAACATCTTTTTATAATTTACAG
GCGTGAAGCAGTTGATTGTGGGCGTGAACAAGATCGACAACACTGAACCG
CCCTACAGTGAAACAAGATTCAAAGAAATCTCCAAAGAGATCGGTACCTA
CGTCAAGAAGGTCGGTTACAACCCCAAAGCCGTTGCCATAGTTCCCATTT
CTGGTTGGCATGGAGACAACATGATCGAATCCTCGACAAATATGTCTTGG
TATAAAGGTTGGACAACTGAAGGAACAACAGAAGAGAAGAAACCATTTAA
AGAAAGTGGCAAAACTTTATTGGAAGCTTTGGACGCCATTCAACCACCCA
AACGCCCTGTTTCCAAACCACTCCGTCTACCATTACAAGATGTTTACAAA
ATCGGAGGTATTGGCACCGTTCCCGTCGGTCGCGTTGAAACTGGCGTCAT
GAAGCCAGGAATGGTGGTGACTTTTGCACCTGCAGGCTTATCAACAGAAG
TGAAATCGGTAGAAATGCATCACGAGTCGCTCACTGAAGCTGTCCCTGGT
GATAATGTGGGTTTCAACGTGAAAAATGTTTCAGTAAAAGAAATCAAACG
GGGTATGGTTGCTTCTGACAGCAAAAATGATCCAGCTAAGGGCGTCGAAA
ACTTCACTGCTCAAGTAAGAAAATTCAATATTTCTTTTTTTTCCTAGGTC
AATTTGATTGACATTCACTCGTTTGAAAGAAAAGTCAGATTTGGCTTTAT
TTTTAAGAGCAATAACATCTTATCAATGCTGTTACTTGTTTATTGGACTT
TGTTAAACGAGTGCCAACTCTGTCTCGCTTATAAATTGCATTACAACTTG
CAAAATAATTCAATACGTTTACAGTGTCTTACAAGAGCTCACTCAAATAT
TGGTTGGAATTCAAAATTGTTCTCGTTTGTTCATTCATAGGTGATCATTT
TGAACCATCCAGGAGAAATTCACGCAGGATACCAACCTGTTCTTGATTGT
CATACGGCTCACGTCGCTTGCAAATTTGCCGTTCTCCAACAGAAAATCGA
TCGTCGTTCAGGAAAAGTTTTGGAAGAAAATCCAAAGATGGTGAAATCAG
GTGATGCAGCCATGATCGAGTTAGTTCCTTCGAAACCCATGGTCGTCGAA
TCTTTCAGTGATTATGCGCCCCTGGGTAGATTTGCCGTTCGTGACATGCG
ACAAACGGTGGCTGTCGGAGTTATCAAAGCCGTCATGAAGAAGGAGAAAG
CCGACGGAAAATCNCGAGTCGCTCACTGAAGCTGTCCCTGGTGATAATGT
GGGTTTCAACGTGAAAAATGTTTCAGTAAAAGAAATCAAACGGGGTATGG
TTGCTTCTGACAGCAAAAATGATCCAGCTAAGGGCGTCGAAAACTTCACT
GCTCAAGTAAGAAAATTCAATATTTCTTTTTTTTCCTAGGTCAATTTGAT
TGACATTCACTCGTTTGAAAGAAAAGTCAGATTTGGCTTTATTTTTAAGA
GCAATAACATCTTATCAATGCTGTTACTTGTTTATTGGACTTTGTTAAAC
GAGTGCCAACTCTGTCTCGCTTATAAATTGCATTACAACTTGCAAAATAA
TTCAATACGTTTACAGTGTCTTACAAGAGCTCACTCAAATATTGGTTGGA
ATTCAAAATTGTTCTCGTTTGTTCATTCATAGGTGATCATTTTGAACCAT
CCAGGAGAAATTCACGCAGGATACCAACCTGTTCTTGATTGTCATACGGC
TCACGTCGCTTGCAAATTTGCCGTTCTCCAACAGAAAATCGATCGTCGTT
CAGGAAAAGTTTTGGAAGAAAATCCAAAGATGGTGAAATCAGGTGATGCA
GCCATGATCGAGTTAGTTCCTTCGAAACCCATGGTCGTCGAATCTTTCAG
TGACTATGCACCCCTGGGTAGATTTGCCGTTCGTGACATGCGACAAACGG
TGGCTGTCGGAGTTATCAAAGCCGTCATGAAGAAGGAGAAAGCCGACGGA
AAATCCACCAAATCTGCCACGAAAGCCAGCAAAAAGAAATGATGTTTATT
TTCCAACAAACTACTTCATGTTGTTGTTGCATTCAATCAAAATGTTTATC
GAACAATCAAATTTCATAGAAAACATTTTCGTAGGATATCAGTGAATTTT
TGAAAAAAGAACGATTTTACGCTTGTTTTATTATTTCAAATTTCAAATTT
TGAGTGAATTTCCTGACTATTTACAGTGAATTCGTTGTCGAACTTTGTAC
TTTTCGTGGAATAGGCATTTTCTTAAATTGTACAGTACAGAAAAAAAAAC
AGTTTTGGCATAACCCATCAAGTCGATCAAGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002786	XLOC_002786	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000049	supercontig	sc0000049:596728..613409 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
472.006	432.503	465.31	434.041	4.10076	4.05428	2.17857	2.53971	0.482338	1.5114	0.726636	0.568727	0.148733	0.138091	0.12907	0.374105	0.806044	0.437431	0.159733	0.162853	2.74062	1.74442	375.344	310.129	2.71512	1.98004	71.3569	78.7269	220.823	248.867

Blast

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BLAST of TCONS_00004922 vs. Swiss-Prot (Human)
Match: EF1A1 (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 731.095 bits (1886), Expect = 0.000e+0
Identity = 353/452 (78.10%), Postives = 393/452 (86.95%), Query Frame = 1

Query:  997 KIKTHLSIVVIGHVDSGKSTSTGHLIYKCGGIDKRAIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFFSNKYEITIIDAPGHRDFIKNMITGTSQADCAVLIVASSTGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKIDNTEPPYSETRFKEISKEIGTYVKKVGYNPKAVAIVPISGWHGDNMIESSTNMSWYXXXXXXXXXXXXXXXXXSGKTLLEALDAIQPPKRPVSKPLRLPLQDVYKIGGIGTVPVGRVETGVMKPGMVVTFAPAGLSTEVKSVEMHHESLTEAVPGDNVGFNVKNVSVKEIKRGMVASDSKNDPAKGVENFTAQVIILNHPGEIHAGYQPVLDCHTAHVACKFAVLQQKIDRRSGKVLEENPKMVKSGDAAMIELVPSKPMVVESFSDYAPLGRFAVRDMRQTVAVGVIKAVMKKEKADG 2352
            K KTH++IVVIGHVDSGKST+TGHLIYKCGGIDKR IEKFEKEA EMGKGSFKYAWVLDKLKAERERGITIDI+LWKF ++KY +TIIDAPGHRDFIKNMITGTSQADCAVLIVA+  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNK+D+TEPPYS+ R++EI KE+ TY+KK+GYNP  VA VPISGW+GDNM+E S NM W+     +G    +K    SG TLLEALD I PP RP  KPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTFAP  ++TEVKSVEMHHE+L+EA+PGDNVGFNVKNVSVK+++RG VA DSKNDP      FTAQVIILNHPG+I AGY PVLDCHTAH+ACKFA L++KIDRRSGK LE+ PK +KSGDAA++++VP KPM VESFSDY PLGRFAVRDMRQTVAVGVIKAV KK    G
Sbjct:    3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWF-----KGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKKAAGAG 449

The following BLAST results are available for this feature:

BLAST of TCONS_00004922 vs. Swiss-Prot (Human)

BLAST of TCONS_00004922 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EF1A1	0.000e+0	78.10	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF...	[more]

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TCONS_00004922 (transcript) - C. hemisphaerica