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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004909 ID=TCONS_00004909|Name=TCONS_00004909|organism=Clytia hemisphaerica|type=transcript|length=3111bpRun BLAST on NCBI protein sequence of TCONS_00004909-protein >TCONS_00004909-protein ID=TCONS_00004909-protein|Name=TCONS_00004909-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp MSENDTDDTKRPRKKDKYRKDKPWDHDGIDHWNVDEFKPEDNPHGMLEESRun BLAST on NCBI transcript from alignment at sc0000049:282911..297998- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004909 ID=TCONS_00004909|Name=TCONS_00004909|organism=Clytia hemisphaerica|type=transcript|length=15088bp|location=Sequence derived from alignment at sc0000049:282911..297998- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000049:282911..297998- >TCONS_00004909 ID=TCONS_00004909|Name=TCONS_00004909|organism=Clytia hemisphaerica|type=CDS|length=11715bp|location=Sequence derived from alignment at sc0000049:282911..297998- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004909 vs. Swiss-Prot (Human)
Match: CSK2B (Casein kinase II subunit beta OS=Homo sapiens GN=CSNK2B PE=1 SV=1) HSP 1 Score: 393.66 bits (1010), Expect = 5.700e-129 Identity = 178/206 (86.41%), Postives = 196/206 (95.15%), Query Frame = 2
Query: 167 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTSLNEQVPHYRQALDMVLDLEPDDNYEDNPSQSDLVEQAAELLYGLIHARYILTNRGVTQMLEKWQNGEFGHCPRVYCENQPVMPIGLSDVPGEAMVKLYCPKCMDVYNPKSSRHHHTDGAYFGSGFPHMLFMVHPDCRPKRSPNQFVPRLFGFKIHPMSYQIQAQAAAN 784
MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLT LNEQVPHYRQALDM+LDLEPD+ EDNP+QSDL+EQAAE+LYGLIHARYILTNRG+ QMLEK+Q G+FG+CPRVYCENQP++PIGLSD+PGEAMVKLYCPKCMDVY PKSSRHHHTDGAYFG+GFPHMLFMVHP+ RPKR NQFVPRL+GFKIHPM+YQ+Q QAA+N
Sbjct: 1 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPMAYQLQLQAASN 206 The following BLAST results are available for this feature:
BLAST of TCONS_00004909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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