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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004899 ID=TCONS_00004899|Name=TCONS_00004899|organism=Clytia hemisphaerica|type=transcript|length=2341bp
ctttttgctaatttttgccAAGTGACGTCATTGTTCGCACCAAGTCATGC
TACAAACAAATATGGAGGCAGGTTGATAAAAGTATTTCAATTTCCGTTGT
ATTTAAACGGTTCGATTGCTCTTTGGTATCCTTACGGGAAATGATGAGAA
GGAAATAGATGTATTTTTCTATCAAAAAGAAAACCATTTGTCAGatataa
aaaagagaattttttgtcGCGTGGATCTATAAAATAGCTAGACGGTGTCG
aaaatttgaattaatttttctaGTCACTTATCTACGCAGACGCATGGCAG
AGGATTAAGAAAAAGACGCGCGTCTAGAAAATTAGCTTTATTAGATTTTT
TGATTCCTATCAAAGGCTAGGGTGGAACCATCACACACAGTTATATAGTA
AATTCTTTGTCTCATCATTTTATACAAGATCGCATCTGACATCAACGTAC
GGTGCAAGACCTTCTTATCAGTAGCTTCAAATCATAACAAAGAGAAGTTG
AAGAGGAGAAAACCCATATAAACACTtattataaacctttttcatcATTT
ATTTACATTGATAGCAGAAGGCGACTGGTGGTTCTTGTTTTTAACATCAA
CTGAACATTGTGTGAGAATATATTTATAAAGTCATGCATGTTGCTGGCAT
CTTTCTGTTTTCATTAGTAATATCTGCTGCAGACTTGACCTTTGCTGATG
ATGANTTGGCATTATTCTGTTTTCATTGGTAATATCTGCTGCAGACTTGA
CCTTTGCTGATGAGGGAGCTGCAAAGACTAACCTGGATCCATCAGAGCGA
TACATCTTGAAAGTTGTCCAACAATTGATAACGAAACATTCCAAAGAGAG
ACTTTTACAGAAAACAAAATCCGATATCCAGAACTTGATTGATGATATTA
ATGAACTAGAACTAGATAATGTTGGTAAAATCATGTCCAAACGAAATTTC
GAAAACGTACAGAGAGAAACAACAGTGAAAGAGAAACAGGATGCTTGGCT
CCAACGTGAGATGAATTTCATTATAAACGAACTTCAAAATTCCAACCCAA
AGGATAACGAAAGTCTTCTTGAACGTAGTCGAAAGATGTCGAAGTTTGGT
AAATACGGCGATAATCTTTCACGACAAACCCAAGAGGATATTATACGAAA
TCCAGAACTTCACAAATTTCACAGATACGGGGATGAACCTGATAAAAAAG
ACCCTAAGTAACTGTCTATAAGCTGTATATGATGTTTAGGTATAATTTTA
CTGTACGTGTAGTACTGGTCAATTTTATACTGAGGAAATTTGTTAgatta
gtctgaatcgcagacctctataaatATACTTCCTAGATATAGAAAGAATA
TATTAAGAAAccctttttcgctagaggatggaGCAGAAGCCCCGCAGAAG
CCTAGTGTTAGATATGAGGGGAACGAGGAAAGGTAAATCTGCTTGAATTA
aaccacccctgtctcagtaacacATTCAAACCCGTTCCATTAAGCCTGTG
AATtccaaatttttcacttttctaaTAACGATATTAACCGCAAAAAAAAC
TgttgattttttacaaaatagatttttttgctCCGTCAGTTGAGGATGAT
TAATCCTTTAGTTTCAATGAGCCAGAGTGGGGTACCGGGGTGGTGACATG
CTATTGGACATAAAAGGTACTAGTTACATGAGGGGATCTCCAAATTATCC
TATCttgaaaatatcaataagaCATCGCATTTCTCATATGATTGTTAGTC
CTCTGTATAATTTTCCTTTCCTCTTATCCTAATTAAAGGTCAATTTAGAT
AATTTGTCGACCTTCCTTTATTCAATTAGTATGTACtgtaaatatgtatt
ttcaaacGTCGATAAAAATCAAGTTTCTTACTTCTTTTCTTGCATTTGTG
AACTCTTCCATTACGTCAAAGTACAActcaaaaaggatttttttacggaa
ttaaGAACGGGTCGAGAATCACACTCTTTTTCCATTGATCCGTActagta
catgttttttataagcaagtgtctgctcCTATATCAGGCTCACATTATGC
TTTTCATtctattatttttaaacaatggagccattgtttaggtaccaaaa
ctGAGCCTGTACAtacttataaacgttatgcttatagaaaaactaTAATA
GAAAACCATTCAATTTTGGTTCTCAACCAAGTGTTTTCCCAGTGAGAGTC
TATCCAGCGGATCAAGGTCCGAGTAACATGTATCTGTTGTCATCTAGGCT
ATACAGCGGAAAGGAGTTTTTCAAAAACCAAATCTCTCCGAACCAACTTT
TCGATGAATCAGCGATTTAAACCCTGAACTCTATATCCAAA Run BLAST on NCBI transcript from alignment at sc0000049:168270..170610- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004899 ID=TCONS_00004899|Name=TCONS_00004899|organism=Clytia hemisphaerica|type=transcript|length=2341bp|location=Sequence derived from alignment at sc0000049:168270..170610- (Clytia hemisphaerica)
CTTTTTGCTAATTTTTGCCAAGTGACGTCATTGTTCGCACCAAGTCATGC
TACAAACAAATATGGAGGCAGGTTGATAAAAGTATTTCAATTTCCGTTGT
ATTTAAACGGTTCGATTGCTCTTTGGTATCCTTACGGGAAATGATGAGAA
GGAAATAGATGTATTTTTCTATCAAAAAGAAAACCATTTGTCAGATATAA
AAAAGAGAATTTTTTGTCGCGTGGATCTATAAAATAGCTAGACGGTGTCG
AAAATTTGAATTAATTTTTCTAGTCACTTATCTACGCAGACGCATGGCAG
AGGATTAAGAAAAAGACGCGCGTCTAGAAAATTAGCTTTATTAGATTTTT
TGATTCCTATCAAAGGCTAGGGTGGAACCATCACACACAGTTATATAGTA
AATTCTTTGTCTCATCATTTTATACAAGATCGCATCTGACATCAACGTAC
GGTGCAAGACCTTCTTATCAGTAGCTTCAAATCATAACAAAGAGAAGTTG
AAGAGGAGAAAACCCATATAAACACTTATTATAAACCTTTTTCATCATTT
ATTTACATTGATAGCAGAAGGCGACTGGTGGTTCTTGTTTTTAACATCAA
CTGAACATTGTGTGAGAATATATTTATAAAGTCATGCATGTTGCTGGCAT
CTTTCTGTTTTCATTAGTAATATCTGCTGCAGACTTGACCTTTGCTGATG
ATGANTTGGCATTATTCTGTTTTCATTGGTAATATCTGCTGCAGACTTGA
CCTTTGCTGATGAGGGAGCTGCAAAGACTAACCTGGATCCATCAGAGCGA
TACATCTTGAAAGTTGTCCAACAATTGATAACGAAACATTCCAAAGAGAG
ACTTTTACAGAAAACAAAATCCGATATCCAGAACTTGATTGATGATATTA
ATGAACTAGAACTAGATAATGTTGGTAAAATCATGTCCAAACGAAATTTC
GAAAACGTACAGAGAGAAACAACAGTGAAAGAGAAACAGGATGCTTGGCT
CCAACGTGAGATGAATTTCATTATAAACGAACTTCAAAATTCCAACCCAA
AGGATAACGAAAGTCTTCTTGAACGTAGTCGAAAGATGTCGAAGTTTGGT
AAATACGGCGATAATCTTTCACGACAAACCCAAGAGGATATTATACGAAA
TCCAGAACTTCACAAATTTCACAGATACGGGGATGAACCTGATAAAAAAG
ACCCTAAGTAACTGTCTATAAGCTGTATATGATGTTTAGGTATAATTTTA
CTGTACGTGTAGTACTGGTCAATTTTATACTGAGGAAATTTGTTAGATTA
GTCTGAATCGCAGACCTCTATAAATATACTTCCTAGATATAGAAAGAATA
TATTAAGAAACCCTTTTTCGCTAGAGGATGGAGCAGAAGCCCCGCAGAAG
CCTAGTGTTAGATATGAGGGGAACGAGGAAAGGTAAATCTGCTTGAATTA
AACCACCCCTGTCTCAGTAACACATTCAAACCCGTTCCATTAAGCCTGTG
AATTCCAAATTTTTCACTTTTCTAATAACGATATTAACCGCAAAAAAAAC
TGTTGATTTTTTACAAAATAGATTTTTTTGCTCCGTCAGTTGAGGATGAT
TAATCCTTTAGTTTCAATGAGCCAGAGTGGGGTACCGGGGTGGTGACATG
CTATTGGACATAAAAGGTACTAGTTACATGAGGGGATCTCCAAATTATCC
TATCTTGAAAATATCAATAAGACATCGCATTTCTCATATGATTGTTAGTC
CTCTGTATAATTTTCCTTTCCTCTTATCCTAATTAAAGGTCAATTTAGAT
AATTTGTCGACCTTCCTTTATTCAATTAGTATGTACTGTAAATATGTATT
TTCAAACGTCGATAAAAATCAAGTTTCTTACTTCTTTTCTTGCATTTGTG
AACTCTTCCATTACGTCAAAGTACAACTCAAAAAGGATTTTTTTACGGAA
TTAAGAACGGGTCGAGAATCACACTCTTTTTCCATTGATCCGTACTAGTA
CATGTTTTTTATAAGCAAGTGTCTGCTCCTATATCAGGCTCACATTATGC
TTTTCATTCTATTATTTTTAAACAATGGAGCCATTGTTTAGGTACCAAAA
CTGAGCCTGTACATACTTATAAACGTTATGCTTATAGAAAAACTATAATA
GAAAACCATTCAATTTTGGTTCTCAACCAAGTGTTTTCCCAGTGAGAGTC
TATCCAGCGGATCAAGGTCCGAGTAACATGTATCTGTTGTCATCTAGGCT
ATACAGCGGAAAGGAGTTTTTCAAAAACCAAATCTCTCCGAACCAACTTT
TCGATGAATCAGCGATTTAAACCCTGAACTCTATATCCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004899-exon-sc0000049-1575043694:168270..170610 | TCONS_00004899-exon-sc0000049-1575043694:168270..170610 | Clytia hemisphaerica | exon |
| TCONS_00004899-exon-sc0000049-1510915933:168270..170610 | TCONS_00004899-exon-sc0000049-1510915933:168270..170610 | Clytia hemisphaerica | exon |
| TCONS_00004899-exon-sc0000049-1491911889:168270..170610 | TCONS_00004899-exon-sc0000049-1491911889:168270..170610 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:168270..170610 - |
Blast
The following BLAST results are available for this feature:
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