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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004894 ID=TCONS_00004894|Name=TCONS_00004894|organism=Clytia hemisphaerica|type=transcript|length=2021bpRun BLAST on NCBI protein sequence of TCONS_00004894-protein >TCONS_00004894-protein ID=TCONS_00004894-protein|Name=TCONS_00004894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=494bp LFLSMIKKLILMSKHIADQAGKGKINVQDHHNRTPLYMAVDKNHMKVAEFRun BLAST on NCBI transcript from alignment at sc0000049:129197..142045- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004894 ID=TCONS_00004894|Name=TCONS_00004894|organism=Clytia hemisphaerica|type=transcript|length=12849bp|location=Sequence derived from alignment at sc0000049:129197..142045- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000049:129197..142045- >TCONS_00004894 ID=TCONS_00004894|Name=TCONS_00004894|organism=Clytia hemisphaerica|type=CDS|length=25245bp|location=Sequence derived from alignment at sc0000049:129197..142045- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004894 vs. Swiss-Prot (Human)
Match: EHMT2 (Histone-lysine N-methyltransferase EHMT2 OS=Homo sapiens GN=EHMT2 PE=1 SV=3) HSP 1 Score: 361.303 bits (926), Expect = 1.514e-109 Identity = 196/487 (40.25%), Postives = 287/487 (58.93%), Query Frame = 3
Query: 45 HIADQAGKGKINVQDHHNRTPLYMAVDKNHMKVAEFLVKAGANIFCQTTEGTNLLHVASRRGNLLAVKWLIKLG-VPANQQDNFGWTALMWCAESDNNSCIIRYLIKQGALTNLLDNEMNICLHWSAIAGSFECARELVSGSSDPQINAKNKFGETPLHVAAKGDHFNVAQFLLLNGADPNIKNKQNCTALDVCPSSSKTFHCI----RIRTEVGQEKIKPYMYL-SDISMGKEKIPVSCLNEVDDESFPQDFIYVVHPEESKNVSVKRGFSTVSPCKCSGTCTAE-CKCVILSEKNKLWYSEDGILDVSIFDEESPVLYECTPLCSCWSYCPNRVAQKGIRFPLQVFKTRTKGWGLRTLTPITQGSFILSYIGELITDEEAEKRE-DTYLFNLDLKTSGDEPNCMDALRIGNCGRFINHSCDANMKAVKLFTHHRDVSFPEVAFFACVDIQGKEELCFNYGDTFWDVKNENGQY--CKCMSENCQY 1475
H+ QAG IN D RTPL AV NH++VA ++V+ G ++ + +G+ LH A++ GNL V L+ G V N QD+ GWT ++W AE + +IR L+ +GA L DNE NICLHW++ GS A L++ D ++A N G+TPLH+AA+ + + L GA+P ++NK+ TA D+ P S + + ++R VG I+ + D++ G E +P+ C+N VD E P+D+ Y+ E+ +++ R + + C C C++ C C LS + WY +DG L E P+++EC CSCW C NRV Q GI+ LQ+++T GWG+R L I QG+FI Y+GELI+D EA+ RE D+YLF+LD K E C+DA GN RFINH CD N+ V++F H+D+ FP +AFF+ DI+ EEL F+YGD FWD+K+ +Y C+C SE C++
Sbjct: 702 HVLLQAG-ANINAVDKQQRTPLMEAVVNNHLEVARYMVQRGGCVYSKEEDGSTCLHHAAKIGNLEMVSLLLSTGQVDVNAQDSGGWTPIIWAAEHKHIE-VIRMLLTRGADVTLTDNEENICLHWASFTGSAAIAEVLLNARCD--LHAVNYHGDTPLHIAARESYHDCVLLFLSRGANPELRNKEGDTAWDLTPERSDVWFALQLNRKLRLGVGNRAIRTEKIICRDVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNIDRNITHLQHCTCVDDCSSSNCLCGQLS--IRCWYDKDGRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVREDDSYLFDLDNKDG--EVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGDRFWDIKS---KYFTCQCGSEKCKH 1177 The following BLAST results are available for this feature:
BLAST of TCONS_00004894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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