TCONS_00004893 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004893
Unique NameTCONS_00004893
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004893 ID=TCONS_00004893|Name=TCONS_00004893|organism=Clytia hemisphaerica|type=transcript|length=820bp
CAATGTTTTCGCTACAAATGAAAATTGACGTCAGTTAACTCAATTCgact
atttgacgtcaatttcgTTGAAAACTGCCTTTAAAAGCAGTGTGATGTGT
CCAAGTGGGAAGTTTCAAATCATTCAATCGAACTTGAAAGaagaacgaag
aagaacaaCATCATGGCTGAGTGCTACATCATCACCTTTGCCTACATTGA
AAAACTACCGAACGAGCTGATCGAAATGATCTGTCTGCAATGTAACGCTG
GCGATCTCATCTCTATTTCACAGACCAACAGAAAATTCTACATCTTGGTC
ACACATATGGCCACCTGCTGGAAAGAGCTATGCCAAACCGATTTTGATAT
CCAACTTTCATCAATCGGGAAATTTTCATCGTATCGGGAAATCTATAAAC
TATTATATTGCTCACGAATGTTAATGGGATGTTATACATACGGtcgttat
tttaatgaccaaaaaCTGAAAATGCCGGATTGGTTAATCCATTGGGCTGC
TTTAAGCCGCCAAACTCCAACCATGAGATACGGTAAGCACCGTGTTAAGG
GGAAAGTTCGAGGAAAATTTCTTCACCAATTCGCTGATTTCCCTTACGGA
AGAATCAAGAAAGTTTATAAATTGAATCAAAACGACCTAGGGAATTTTCC
CATTGAGCGTGCTTTCAATAGAACTTGGTATTTTTCTTATGAATCTATCA
AAAGTGCGGGGTCTATTAAACATGGTAGCCAACAGAAATTTACTGAATTT
CTTTTGGATAAATGTCACAGATCACGTGGTTATATTATGCGAAACCATCA
AAAAATACTTCGAGTCAATC
Run BLAST on NCBI

protein sequence of TCONS_00004893-protein

>TCONS_00004893-protein ID=TCONS_00004893-protein|Name=TCONS_00004893-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MAECYIITFAYIEKLPNELIEMICLQCNAGDLISISQTNRKFYILVTHMA
TCWKELCQTDFDIQLSSIGKFSSYREIYKLLYCSRMLMGCYTYGRYFNDQ
KLKMPDWLIHWAALSRQTPTMRYGKHRVKGKVRGKFLHQFADFPYGRIKK
VYKLNQNDLGNFPIERAFNRTWYFSYESIKSAGSIKHGSQQKFTEFLLDK
CHRSRGYIMRNHQKILRVN
Run BLAST on NCBI

transcript from alignment at sc0000049:122977..124146-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004893 ID=TCONS_00004893|Name=TCONS_00004893|organism=Clytia hemisphaerica|type=transcript|length=1170bp|location=Sequence derived from alignment at sc0000049:122977..124146- (Clytia hemisphaerica)
CAATGTTTTCGCTACAAATGAAAATTGACGTCAGTTAACTCAATTCGACT
ATTTGACGTCAATTTCGTTGAAAACTGCCTTTAAAAGCAGTGTGATGTGT
CCAAGTGGGAAGTTTCAAATCATTCAATCGAACTTGAAAGAAGAACGAAG
AAGAACAACATCATGGCTGAGTGCTACATCATCACCTTTGCCTACATTGA
AAGTAAGTTGAAATGTTTTGTATATGTTTATATATTAAGCTAGCATTGGA
CTTGTCCGCCAAAGTCTTGTGAGGCTCCCATGAAAGAATTAGCCAAAGAA
GAAATATCTAAGCCTGACATTTCAGAGGCCGAAAATTGAAATTGATTGTA
ATATCTGATTGAAAAATGCAAGAAAAAGTGCTGTGAGCTAAAAAACAACA
AACACAACACTACAACAAACCCGCTCTGGAAGGAAAATCCGTTCGTGAAT
TTTTCTCTGTTCGAAATTTTCGAAAAAAGTTTTCTCTTTCGAGTAATTTT
TTTAACCGTCTGTTGTTGCTTATCTAAAAAACTGTTTTACTTTATTTTGC
AGAACTACCGAACGAGCTGATCGAAATGATCTGTCTGCAATGTAACGCTG
GCGATCTCATCTCTATTTCACAGACCAACAGAAAATTCTACATCTTGGTC
ACACATATGGCCACCTGCTGGAAAGAGCTATGCCAAACCGATTTTGATAT
CCAACTTTCATCAATCGGGAAATTTTCATCGTATCGGGAAATCTATAAAC
TATTATATTGCTCACGAATGTTAATGGGATGTTATACATACGGTCGTTAT
TTTAATGACCAAAAACTGAAAATGCCGGATTGGTTAATCCATTGGGCTGC
TTTAAGCCGCCAAACTCCAACCATGAGATACGGTAAGCACCGTGTTAAGG
GGAAAGTTCGAGGAAAATTTCTTCACCAATTCGCTGATTTCCCTTACGGA
AGAATCAAGAAAGTTTATAAATTGAATCAAAACGACCTAGGGAATTTTCC
CATTGAGCGTGCTTTCAATAGAACTTGGTATTTTTCTTATGAATCTATCA
AAAGTGCGGGGTCTATTAAACATGGTAGCCAACAGAAATTTACTGAATTT
CTTTTGGATAAATGTCACAGATCACGTGGTTATATTATGCGAAACCATCA
AAAAATACTTCGAGTCAATC

Coding sequence (CDS) from alignment at sc0000049:122977..124146-

>TCONS_00004893 ID=TCONS_00004893|Name=TCONS_00004893|organism=Clytia hemisphaerica|type=CDS|length=1314bp|location=Sequence derived from alignment at sc0000049:122977..124146- (Clytia hemisphaerica)
AACTACCGAACGAGCTGATCGAAATGATCTGTCTGCAATGTAACGCTGGC
GATCTCATCTCTATTTCACAGACCAACAGAAAATTCTACATCTTGGTCAC
ACATATGGCCACCTGCTGGAAAGAGCTATGCCAAACCGATTTTGATATCC
AACTTTCATCAATCGGGAAATTTTCATCGTATCGGGAAATCTATAAACTA
TTATATTGCTCACGAATGTTAATGGGATGTTATACATACGGTCGTTATTT
TAATGACCAAAAACTGAAAATGCCGGATTGGTTAATCCATTGGGCTGCTT
TAAGCCGCCAAACTCCAACCATGAGATACGGTAAGCACCGTGTTAAGGGG
AAAGTTCGAGGAAAATTTCTTCACCAATTCGCTGATTTCCCTTACGGAAG
AATCAAGAAAGTTTATAAATTGAATCAAAACGACCTAGGGAATTTTCCCA
TTGAGCGTGCTTTCAATAGAACTTGGTATTTTTCTTATGAATCTATCAAA
AGTGCGGGGTCTATTAAACATGGTAGCCAACAGAAATTTACTGAATTTCT
TTTGGATAAATGTCACAGATCACGTGGTTATATTATGCGAAACCATCAAA
AAATACTTCGAGTCAATATGGCTGAGTGCTACATCATCACCTTTGCCTAC
ATTGAAAAACTACCGAACGAGCTGATCGAAATGATCTGTCTGCAATGTAA
CGCTGGCGATCTCATCTCTATTTCACAGACCAACAGAAAATTCTACATCT
TGGTCACACATATGGCCACCTGCTGGAAAGAGCTATGCCAAACCGATTTT
GATATCCAACTTTCATCAATCGGGAAATTTTCATCGTATCGGGAAATCTA
TAAACTATTATATTGCTCACGAATGTTAATGGGATGTTATACATACGGTC
GTTATTTTAATGACCAAAAACTGAAAATGCCGGATTGGTTAATCCATTGG
GCTGCTTTAAGCCGCCAAACTCCAACCATGAGATACGGTAAGCACCGTGT
TAAGGGGAAAGTTCGAGGAAAATTTCTTCACCAATTCGCTGATTTCCCTT
ACGGAAGAATCAAGAAAGTTTATAAATTGAATCAAAACGACCTAGGGAAT
TTTCCCATTGAGCGTGCTTTCAATAGAACTTGGTATTTTTCTTATGAATC
TATCAAAAGTGCGGGGTCTATTAAACATGGTAGCCAACAGAAATTTACTG
AATTTCTTTTGGATAAATGTCACAGATCACGTGGTTATATTATGCGAAAC
CATCAAAAAATACTTCGAGTCAATATGGCTGAGTGCTACATCATCACCTT
TGCCTACATTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002770XLOC_002770Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004893-proteinTCONS_00004893-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004893-exon-sc0000049-1575043694:123945..124146TCONS_00004893-exon-sc0000049-1575043694:123945..124146Clytia hemisphaericaexon
TCONS_00004893-exon-sc0000049-1575043694:122977..123594TCONS_00004893-exon-sc0000049-1575043694:122977..123594Clytia hemisphaericaexon
TCONS_00004893-exon-sc0000049-1510915933:123945..124146TCONS_00004893-exon-sc0000049-1510915933:123945..124146Clytia hemisphaericaexon
TCONS_00004893-exon-sc0000049-1510915933:122977..123594TCONS_00004893-exon-sc0000049-1510915933:122977..123594Clytia hemisphaericaexon
TCONS_00004893-exon-sc0000049-1491911889:123945..124146TCONS_00004893-exon-sc0000049-1491911889:123945..124146Clytia hemisphaericaexon
TCONS_00004893-exon-sc0000049-1491911889:122977..123594TCONS_00004893-exon-sc0000049-1491911889:122977..123594Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:122977..124146 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11613	0.169868	0.0657442	0.321602	0.39152	0.247507	0.746518	0.698881	0.587164	0.242432	0.0588277	0.889433	0.154469	0.160418	0.362684	0.212299	0	0.134033	0.308622	0.0645902	0.336843	0.657202	0.0665762	0.0605275	0.249367	0.612025	0.0796187	0.0849712	0.257791	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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